Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		N	G	H	S	K	P	K	A	K	K	S	G	G	K	R	V	V	V	L	D	P	G	H	G	G	I	D	T	G	A	I	G	R	N	G	S	K	E	K	H	V	V	L	A	I	A	K	N	V	R	S	I	L	R	N	H	G	I	D	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?																		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Sequence		R	L	T	R	S	G	D	T	F	I	P	L	Y	D	R	V	E	I	A	H	K	H	G	A	D	L	F	M	S	I	H	A	D
Secondary structure
SS confidence
Disorder																																	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ne8 chain A Region: 13 - 93 Aligned: 81 Modelled: 81 Confidence: 99.9% Identity: 51% PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1 Phyre2 PDB 1jwq chain A Region: 15 - 93 Aligned: 79 Modelled: 79 Confidence: 99.9% Identity: 47% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 3czx chain A Region: 13 - 93 Aligned: 78 Modelled: 80 Confidence: 99.9% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis Phyre2 PDB 3qay chain C Region: 14 - 93 Aligned: 80 Modelled: 80 Confidence: 99.8% Identity: 15% PDB header:lyase Chain: C: PDB Molecule:endolysin; PDBTitle: catalytic domain of cd27l endolysin targeting clostridia difficile Phyre2 PDB 1xov chain A Region: 13 - 93 Aligned: 79 Modelled: 81 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:ply protein; PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa Phyre2 PDB 1xov chain A domain 2 Region: 15 - 93 Aligned: 77 Modelled: 79 Confidence: 99.8% Identity: 18% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1nyr chain A domain 1 Region: 39 - 90 Aligned: 49 Modelled: 52 Confidence: 85.2% Identity: 10% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 2g4c chain A domain 1 Region: 44 - 90 Aligned: 47 Modelled: 47 Confidence: 82.5% Identity: 9% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1g5h chain A domain 1 Region: 39 - 90 Aligned: 52 Modelled: 52 Confidence: 81.5% Identity: 10% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1nj1 chain A domain 1 Region: 37 - 90 Aligned: 51 Modelled: 54 Confidence: 77.6% Identity: 24% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1wu7 chain A domain 1 Region: 43 - 90 Aligned: 45 Modelled: 47 Confidence: 77.1% Identity: 20% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1qf6 chain A domain 1 Region: 40 - 90 Aligned: 48 Modelled: 51 Confidence: 75.7% Identity: 8% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1y80 chain A Region: 46 - 90 Aligned: 42 Modelled: 45 Confidence: 70.9% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica Phyre2 PDB 1qe0 chain A domain 1 Region: 43 - 90 Aligned: 45 Modelled: 48 Confidence: 70.0% Identity: 22% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1ccw chain A Region: 46 - 90 Aligned: 42 Modelled: 45 Confidence: 69.2% Identity: 19% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 3bul chain A domain 2 Region: 46 - 90 Aligned: 42 Modelled: 45 Confidence: 69.1% Identity: 17% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 1nj2 chain A Region: 37 - 90 Aligned: 51 Modelled: 54 Confidence: 67.0% Identity: 24% PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus Phyre2 PDB 1u83 chain A Region: 3 - 88 Aligned: 82 Modelled: 86 Confidence: 64.2% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis Phyre2 PDB 1u83 chain A Region: 3 - 88 Aligned: 82 Modelled: 86 Confidence: 64.2% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: (2r)-phospho-3-sulfolactate synthase ComA Family: (2r)-phospho-3-sulfolactate synthase ComA Phyre2 PDB 1fyf chain B Region: 40 - 90 Aligned: 48 Modelled: 51 Confidence: 62.9% Identity: 8% PDB header:ligase Chain: B: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of a truncated form of threonyl-trna2 synthetase complexed with a seryl adenylate analog Phyre2 1 c3ne8A_ 2 d1jwqa_ 3 c3czxA_ 4 c3qayC_ 5 c1xovA_ 6 d1xova2 7 d1nyra1 8 d2g4ca1 9 d1g5ha1 10 d1nj1a1 11 d1wu7a1 12 d1qf6a1 13 c1y80A_ 14 d1qe0a1 15 d1ccwa_ 16 d3bula2 17 c1nj2A_ 18 c1u83A_ 19 d1u83a_ 20 c1fyfB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ne8A_ 99.9 51 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1 2 d1jwqa_ 99.9 47 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 3 c3czxA_ 99.9 28 PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis 4 c3qayC_ 99.8 15 PDB header:lyase Chain: C: PDB Molecule:endolysin; PDBTitle: catalytic domain of cd27l endolysin targeting clostridia difficile 5 c1xovA_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:ply protein; PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa 6 d1xova2 99.8 18 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 7 d1nyra1 85.2 10 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 8 d2g4ca1 82.5 9 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 9 d1g5ha1 81.5 10 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 10 d1nj1a1 77.6 24 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 11 d1wu7a1 77.1 20 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 12 d1qf6a1 75.7 8 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 13 c1y80A_ 70.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 14 d1qe0a1 70.0 22 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 15 d1ccwa_ 69.2 19 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 16 d3bula2 69.1 17 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 17 c1nj2A_ 67.0 24 PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus 18 c1u83A_ 64.2 16 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 19 d1u83a_ 64.2 16 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 20 c1fyfB_ 62.9 8 PDB header:ligase Chain: B: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of a truncated form of threonyl-trna2 synthetase complexed with a seryl adenylate analog 21 c1g5hA_ not modelled 62.2 10 PDB header:dna binding protein Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit; PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma 22 c2yxbA_ not modelled 59.0 26 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 23 c3netB_ not modelled 58.5 19 PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from nostoc sp. pcc 7120 24 d1nj8a1 not modelled 58.3 16 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 25 d1fmfa_ not modelled 57.0 18 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 26 c2vefB_ not modelled 55.9 35 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 27 c2i4lC_ not modelled 54.6 17 PDB header:ligase Chain: C: PDB Molecule:proline-trna ligase; PDBTitle: rhodopseudomonas palustris prolyl-trna synthetase 28 c2qvpC_ not modelled 53.4 20 PDB header:hydrolase Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative metallopeptidase (sama_0725) from2 shewanella amazonensis sb2b at 2.00 a resolution 29 c1vmeB_ not modelled 53.0 17 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 30 c2hqbA_ not modelled 51.3 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 31 c2j3mA_ not modelled 50.3 10 PDB header:ligase Chain: A: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from enterococcus faecalis complexed2 with atp, manganese and prolinol 32 c3rfqC_ not modelled 50.2 18 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 33 c3hriF_ not modelled 49.1 18 PDB header:ligase Chain: F: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase (apo) from trypanosoma brucei 34 c3i3wB_ not modelled 48.0 30 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis 35 c2an1D_ not modelled 47.8 16 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 36 c1bmtB_ not modelled 46.1 17 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 37 c3b2yB_ not modelled 45.1 19 PDB header:hydrolase Chain: B: PDB Molecule:metallopeptidase containing co-catalytic metalloactive PDBTitle: crystal structure of a putative metallopeptidase (sden_2526) from2 shewanella denitrificans os217 at 1.74 a resolution 38 c1ggmB_ not modelled 44.9 13 PDB header:ligase Chain: B: PDB Molecule:protein (glycyl-trna synthetase); PDBTitle: glycyl-trna synthetase from thermus thermophilus complexed with2 glycyl-adenylate 39 d2naca2 not modelled 43.7 24 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 40 c1wu7A_ not modelled 43.6 20 PDB header:ligase Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from2 thermoplasma acidophilum 41 c2fuvB_ not modelled 42.4 25 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. 42 c3ezxA_ not modelled 39.0 19 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 43 c1atiA_ not modelled 38.7 13 PDB header:protein biosynthesis Chain: A: PDB Molecule:glycyl-trna synthetase; PDBTitle: crystal structure of glycyl-trna synthetase from thermus thermophilus 44 c2gx8B_ not modelled 36.6 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 45 c3ikmC_ not modelled 36.2 7 PDB header:transferase Chain: C: PDB Molecule:dna polymerase subunit gamma-2; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 46 d1hc7a1 not modelled 36.1 15 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 47 c2is8A_ not modelled 36.0 13 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 48 c1c4gB_ not modelled 35.0 23 PDB header:transferase Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex 49 c1qf6A_ not modelled 34.7 8 PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna 50 c4a26B_ not modelled 33.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic; PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase 51 d1atia1 not modelled 33.0 14 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 52 c2pjkA_ not modelled 31.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 53 c3hlyA_ not modelled 30.8 9 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 54 d2a5la1 not modelled 30.5 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 55 d1vmea1 not modelled 28.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 56 c3a32A_ not modelled 28.3 15 PDB header:ligase Chain: A: PDB Molecule:probable threonyl-trna synthetase 1; PDBTitle: crystal structure of putative threonyl-trna synthetase2 thrrs-1 from aeropyrum pernix 57 d2g2ca1 not modelled 28.0 9 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 58 c2pmfA_ not modelled 27.4 18 PDB header:ligase Chain: A: PDB Molecule:glycyl-trna synthetase; PDBTitle: the crystal structure of a human glycyl-trna synthetase mutant 59 c1nyqA_ not modelled 27.4 11 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate 60 d1a9xa3 not modelled 27.0 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 61 d2gx8a1 not modelled 26.4 21 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 62 d1kmma1 not modelled 26.4 18 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 63 c1qe0B_ not modelled 26.3 22 PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of apo s. aureus histidyl-trna synthetase 64 d1kjna_ not modelled 26.3 15 Fold:Hypothetical protein MTH777 (MT0777) Superfamily:Hypothetical protein MTH777 (MT0777) Family:Hypothetical protein MTH777 (MT0777) 65 d1h4vb1 not modelled 25.9 21 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 66 c1nj8C_ not modelled 25.7 16 PDB header:ligase Chain: C: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii 67 d1vkha_ not modelled 25.6 12 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Putative serine hydrolase Ydr428c 68 c2g4rB_ not modelled 25.4 16 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 69 d7reqa2 not modelled 24.9 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 70 c2i2xD_ not modelled 24.6 15 PDB header:transferase Chain: D: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 71 d1mkza_ not modelled 24.4 7 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 72 c3fniA_ not modelled 24.3 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 73 d1xi8a3 not modelled 24.2 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 74 d1xhfa1 not modelled 24.1 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 75 d2f7wa1 not modelled 24.0 9 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 76 d1p5dx2 not modelled 23.7 21 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 77 d1kfia2 not modelled 23.3 29 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 78 d2fywa1 not modelled 23.0 29 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 79 c2jlaD_ not modelled 22.9 16 PDB header:transferase Chain: D: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl-2 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet3 protein 80 c3c3mA_ not modelled 22.6 17 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 81 c3maxB_ not modelled 22.5 23 PDB header:hydrolase Chain: B: PDB Molecule:histone deacetylase 2; PDBTitle: crystal structure of human hdac2 complexed with an n-(2-aminophenyl)2 benzamide 82 d1qnaa1 not modelled 21.6 19 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 83 d1b74a1 not modelled 21.6 27 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 84 d1iowa1 not modelled 21.3 35 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 85 d2pl1a1 not modelled 21.2 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 86 d1xrsb1 not modelled 20.9 24 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 87 c2vavL_ not modelled 20.5 13 PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak) 88 c2nydB_ not modelled 20.4 12 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 89 d1y5ea1 not modelled 20.0 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 90 d1uz5a3 not modelled 19.9 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 91 d1qwga_ not modelled 19.4 26 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 92 d1o2da_ not modelled 19.2 13 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 93 c1e5dA_ not modelled 19.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 94 c1cg2D_ not modelled 19.1 18 PDB header:metallocarboxypeptidase Chain: D: PDB Molecule:carboxypeptidase g2; PDBTitle: carboxypeptidase g2 95 d2grea2 not modelled 18.6 9 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 96 c3f6sI_ not modelled 17.6 17 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 97 c3k5pA_ not modelled 17.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 98 d1cg2a1 not modelled 17.4 18 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 99 d1fmta2 not modelled 17.3 13 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0