Email l.a.kelley@imperial.ac.uk Description P41065 Date Thu Jan 5 12:01:22 GMT 2012 Unique Job ID f9c61ee2af6d59b6

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1tjlD_ 99.8 27 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 2 c2kgoA_ 99.8 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 3 c2kq9A_ 99.6 32 PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888 4 d1tjla2 99.6 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Prokaryotic DksA/TraR C4-type zinc finger 5 c2gviA_ 76.3 30 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution 6 d1tjla1 72.4 20 Fold:Long alpha-hairpin Superfamily:DnaK suppressor protein DksA, alpha-hairpin domain Family:DnaK suppressor protein DksA, alpha-hairpin domain 7 c3mhsE_ 67.8 45 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 8 c2b0oF_ 67.0 19 PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain 9 c2owaB_ 66.5 15 PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) 10 c2p57A_ 66.3 25 PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein 11 c3jueA_ 64.5 29 PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1 12 c3d00A_ 59.6 40 PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution 13 c3lvrE_ 59.3 17 PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium 14 d1dcqa2 54.6 21 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:Pyk2-associated protein beta ARF-GAP domain 15 c1dcqA_ 48.6 21 PDB header:metal binding protein Chain: A: PDB Molecule:pyk2-associated protein beta; PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta. 16 c2iqjB_ 46.4 18 PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like 17 c3fehA_ 43.2 21 PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1 18 d1rutx1 39.3 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 19 c2d9lA_ 39.0 12 PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip 20 c3dwdB_ 38.3 18 PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 21 c3o47A_ not modelled 32.4 23 PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein 22 d1j2oa1 not modelled 31.3 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 23 d1rutx3 not modelled 27.9 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 24 d1wyha1 not modelled 27.6 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 25 d1x4ka1 not modelled 27.5 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 26 d1xpaa2 not modelled 26.4 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain 27 d2cura1 not modelled 24.9 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 28 d1x3ha1 not modelled 19.1 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 29 c2d8xA_ not modelled 17.9 21 PDB header:structural protein, cell cycle Chain: A: PDB Molecule:protein pinch; PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch) 30 d2cora1 not modelled 16.9 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 31 c2curA_ not modelled 16.4 24 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of skeletal muscle lim-protein 1 32 c2d8zA_ not modelled 16.3 21 PDB header:signaling protein, structural protein Chain: A: PDB Molecule:four and a half lim domains 2; PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2) 33 c3na7A_ not modelled 16.3 15 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 34 d2cupa3 not modelled 15.2 44 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 35 d2dloa1 not modelled 13.3 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 36 c1x4lA_ not modelled 13.1 18 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2 37 c2cuqA_ not modelled 12.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:four and a half lim domains 3; PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2 38 c3f6qB_ not modelled 12.5 28 PDB header:signaling protein/signaling protein Chain: B: PDB Molecule:lim and senescent cell antigen-like-containing PDBTitle: crystal structure of integrin-linked kinase ankyrin repeat2 domain in complex with pinch1 lim1 domain 39 d1twfj_ not modelled 12.3 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 40 d1x4la2 not modelled 12.3 56 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 41 c1wyhA_ not modelled 12.3 24 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 2; PDBTitle: solution structure of the lim domain from human skeletal2 muscle lim-protein 2 42 c1d4uA_ not modelled 12.3 20 PDB header:dna binding protein Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd); PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies 43 c3h0gL_ not modelled 12.2 36 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 44 d2dara2 not modelled 11.9 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 45 c2darA_ not modelled 11.8 21 PDB header:metal binding protein Chain: A: PDB Molecule:pdz and lim domain protein 5; PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein 46 d1ef4a_ not modelled 11.8 50 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 47 d1m3va1 not modelled 11.6 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 48 c1j2oA_ not modelled 11.4 23 PDB header:metal binding protein Chain: A: PDB Molecule:fusion of rhombotin-2 and lim domain-binding PDBTitle: structure of flin2, a complex containing the n-terminal lim2 domain of lmo2 and ldb1-lid 49 c2pmzN_ not modelled 11.3 50 PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 50 c2ja6L_ not modelled 10.4 23 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 51 c1x63A_ not modelled 10.2 21 PDB header:contractile protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1 52 c2cu8A_ not modelled 10.2 10 PDB header:metal binding protein Chain: A: PDB Molecule:cysteine-rich protein 2; PDBTitle: solution structure of the lim domain of human cysteine-rich2 protein 2 53 d1ee8a3 not modelled 9.7 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 54 c2egqA_ not modelled 9.1 18 PDB header:structural protein Chain: A: PDB Molecule:fhl1 protein; PDBTitle: solution structure of the fourth lim domain from human four2 and a half lim domains 1 55 c1x61A_ not modelled 9.0 16 PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor interacting protein 6; PDBTitle: solution structure of the first lim domain of thyroid2 receptor interacting protein 6 (trip6) 56 c1x64A_ not modelled 8.9 14 PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein 57 c2bzwB_ not modelled 8.7 67 PDB header:transcription Chain: B: PDB Molecule:bcl2-antagonist of cell death; PDBTitle: the crystal structure of bcl-xl in complex with full-length2 bad 58 c1x62A_ not modelled 8.6 25 PDB header:structural protein Chain: A: PDB Molecule:c-terminal lim domain protein 1; PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1 59 c1x4kA_ not modelled 8.6 28 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in lim-protein 3 60 c2l4zA_ not modelled 8.3 31 PDB header:hydrolase, metal binding protein Chain: A: PDB Molecule:dna endonuclease rbbp8, lim domain transcription factor PDBTitle: nmr structure of fusion of ctip (641-685) to lmo4-lim1 (18-82) 61 c3a44D_ not modelled 8.2 20 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 62 c2d8yA_ not modelled 7.9 17 PDB header:structural protein Chain: A: PDB Molecule:eplin protein; PDBTitle: solution structure of the lim domain of epithelial protein2 lost in neoplasm 63 c2o10A_ not modelled 7.7 20 PDB header:metal binding protein Chain: A: PDB Molecule:muscle lim protein; PDBTitle: solution structure of the n-terminal lim domain of mlp/crp3 64 d1u5ka2 not modelled 7.6 33 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:RecO C-terminal domain-like 65 c2iybG_ not modelled 7.4 36 PDB header:metal-binding Chain: G: PDB Molecule:testin; PDBTitle: structure of complex between the 3rd lim domain of tes and2 the evh1 domain of mena 66 c2i5oA_ not modelled 7.4 56 PDB header:transferase Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta 67 c1rutX_ not modelled 7.3 33 PDB header:protein binding Chain: X: PDB Molecule:fusion protein of lmo4 protein and lim domain- PDBTitle: complex of lmo4 lim domains 1 and 2 with the ldb1 lid domain 68 d2czra1 not modelled 7.3 27 Fold:Restriction endonuclease-like Superfamily:TBP-interacting protein-like Family:TBP-interacting protein-like 69 d1xx6a2 not modelled 7.3 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 70 c2dloA_ not modelled 7.2 29 PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor-interacting protein 6; PDBTitle: solution structure of the second lim domain of human2 thyroid receptor-interacting protein 6 71 c1ibiA_ not modelled 6.8 24 PDB header:metal binding protein Chain: A: PDB Molecule:cysteine-rich protein 2; PDBTitle: quail cysteine and glycine-rich protein, nmr, 15 minimized2 model structures 72 c3q8dB_ not modelled 6.7 25 PDB header:dna binding protein Chain: B: PDB Molecule:dna repair protein reco; PDBTitle: e. coli reco complex with ssb c-terminus 73 c1x68A_ not modelled 6.6 33 PDB header:protein binding Chain: A: PDB Molecule:fhl5 protein; PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein 74 c1x3hA_ not modelled 6.6 14 PDB header:metal binding protein Chain: A: PDB Molecule:leupaxin; PDBTitle: solution structure of the lim domain of human leupaxin 75 c2qgpA_ not modelled 6.4 33 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 76 d1v6ga1 not modelled 6.4 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 77 c2ko5A_ not modelled 6.4 40 PDB header:transcription Chain: A: PDB Molecule:ring finger protein z; PDBTitle: nmr solution structure of lfv-z 78 d2ak3a2 not modelled 6.3 20 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 79 d2cuqa1 not modelled 6.2 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 80 c2xjyA_ not modelled 6.2 25 PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2; PDBTitle: crystal structure of the lmo2:ldb1-lid complex, p21 crystal2 form 81 d2d8za2 not modelled 6.0 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 82 d1e4va2 not modelled 6.0 10 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 83 c2f9iD_ not modelled 5.9 17 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 84 d1l1ta3 not modelled 5.9 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 85 d1x63a2 not modelled 5.7 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 86 c1a7iA_ not modelled 5.7 17 PDB header:lim domain containing proteins Chain: A: PDB Molecule:qcrp2 (lim1); PDBTitle: amino-terminal lim domain from quail cysteine and glycine-2 rich protein, nmr, minimized average structure 87 d1bboa1 not modelled 5.6 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 88 d1k3xa3 not modelled 5.6 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 89 d1rzsa_ not modelled 5.6 38 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 90 c1loiA_ not modelled 5.5 50 PDB header:hydrolase Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1; PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures 91 c1m3vA_ not modelled 5.5 27 PDB header:metal binding protein Chain: A: PDB Molecule:fusion of the lim interacting domain of ldb1 and PDBTitle: flin4: fusion of the lim binding domain of ldb1 and the n-2 terminal lim domain of lmo4 92 d2d8ua1 not modelled 5.5 33 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 93 c2l3kA_ not modelled 5.4 33 PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1; PDBTitle: solution structure of lmo2(lim2)-ldb1(lid) 94 d1k82a3 not modelled 5.3 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 95 c1b8tA_ not modelled 5.3 16 PDB header:contractile Chain: A: PDB Molecule:protein (crp1); PDBTitle: solution structure of the chicken crp1 96 d1wjva2 not modelled 5.2 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:C2HC finger 97 d1zina2 not modelled 5.2 33 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 98 c2jtnA_ not modelled 5.2 19 PDB header:protein binding/transcription Chain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex 99 d1u5sb1 not modelled 5.1 56 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain