Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	G	K	K	R	I	G	L	L	F	L	L	I	A	V	V	V	G	G	G	G	L	L	L	A	Q	K	V	L	H	K	T	S	D	T	A	F	C	L	S	C	H	S	M	S	K	P	F	E	E	Y	Q	G	T	V	H	F	S	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																			?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	K	G	I	R	A	E	C	A	D	C	H	I	P	K	S	G	M	D	Y	L	F	A	K	L	K	A	S	K	D	I	Y	H	E	F	V	S	G	K	I	D	S	D	D	K	F	E	A	H	R	Q	E	M	A	E	T	V	W	K	E
Secondary structure
SS confidence
Disorder		?				?																																																	?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	K	A	T	D	S	A	T	C	R	S	C	H	S	F	D	A	M	D	I	A	S	Q	S	E	S	A	Q	K	M	H	N	K	A	Q	K	D	S	E	T	C	I	D	C	H	K	G	I	A	H	F	P	P	E	I	K	M	D	D	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?											?	?		?	?	?	?	?	?					?	?					?	?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	A	H	E	L	E	S	Q	A	A	T	S	V	T	N	G	A	H	I	Y	P	F	K	T	S	H	I	G	E	L	A	T	V	N	P	G	T	D	L	T	V	V	D	A	S	G	K	Q	P	I	V	L	L	Q	G	Y	Q	M	Q	G
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?	?	?	?	?	?	?	?	?									?												?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	E	N	T	L	Y	L	A	A	G	Q	R	L	A	L	A	T	L	S	E	E	G	I	K	A	L	T	V	N	G	E	W	Q	A	D	E	Y	G	N	Q	W	R	Q	A	S	L	Q	G	A	L	T	D	P	A	L	A	D	R	K	P
Secondary structure
SS confidence
Disorder																								?	?					?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	W	Q	Y	A	E	K	L	D	D	T	Y	C	A	G	C	H	A	P	I	A	A	D	H	Y	T	V	N	A	W	P	S	I	A	K	G	M	G	A	R	T	S	M	S	E	N	E	L	D	I	L	T	R	Y	F	Q	Y	N	A	K
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?												?	?		?	?	?	?																?
Disorder confidence
		.	.	.	.	.	.
Sequence		D	I	T	E	K	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fgj chain A Region: 35 - 357 Aligned: 271 Modelled: 290 Confidence: 99.9% Identity: 17% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fgj chain A Region: 35 - 357 Aligned: 271 Modelled: 290 Confidence: 99.9% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase Phyre2 PDB 2j7a chain C Region: 11 - 177 Aligned: 136 Modelled: 156 Confidence: 99.9% Identity: 27% PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 2rdz chain A domain 1 Region: 34 - 206 Aligned: 154 Modelled: 154 Confidence: 98.6% Identity: 21% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2bpb chain B Region: 305 - 358 Aligned: 54 Modelled: 54 Confidence: 98.6% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella Phyre2 PDB 1sp3 chain A Region: 36 - 223 Aligned: 166 Modelled: 175 Confidence: 98.5% Identity: 18% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs7 chain A Region: 34 - 206 Aligned: 148 Modelled: 155 Confidence: 98.4% Identity: 17% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs9 chain A Region: 34 - 206 Aligned: 148 Modelled: 155 Confidence: 98.4% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex Phyre2 PDB 1oah chain A Region: 34 - 206 Aligned: 141 Modelled: 154 Confidence: 98.4% Identity: 16% PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). Phyre2 PDB 1oah chain A Region: 34 - 206 Aligned: 141 Modelled: 154 Confidence: 98.4% Identity: 16% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2p0b chain A Region: 34 - 165 Aligned: 123 Modelled: 132 Confidence: 98.2% Identity: 19% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb Phyre2 PDB 1pby chain A domain 1 Region: 305 - 358 Aligned: 54 Modelled: 54 Confidence: 98.0% Identity: 20% Fold: Cytochrome c Superfamily: Cytochrome c Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Phyre2 PDB 1jmx chain A domain 1 Region: 305 - 358 Aligned: 54 Modelled: 54 Confidence: 97.9% Identity: 20% Fold: Cytochrome c Superfamily: Cytochrome c Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Phyre2 PDB 3f29 chain A Region: 35 - 165 Aligned: 117 Modelled: 131 Confidence: 97.8% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Phyre2 PDB 2vr0 chain A Region: 35 - 134 Aligned: 68 Modelled: 72 Confidence: 97.7% Identity: 28% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor Phyre2 PDB 2fwt chain A Region: 306 - 364 Aligned: 59 Modelled: 59 Confidence: 97.7% Identity: 24% PDB header:electron transport Chain: A: PDB Molecule:dhc, diheme cytochrome c; PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides Phyre2 PDB 2j7a chain E Region: 31 - 134 Aligned: 69 Modelled: 76 Confidence: 97.6% Identity: 29% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 1qdb chain A Region: 26 - 134 Aligned: 76 Modelled: 80 Confidence: 97.6% Identity: 24% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 3pmq chain A Region: 35 - 165 Aligned: 112 Modelled: 131 Confidence: 97.5% Identity: 20% PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf Phyre2 PDB 1ft5 chain A Region: 35 - 214 Aligned: 159 Modelled: 180 Confidence: 97.5% Identity: 18% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 1 d1fgja_ 2 c1fgjA_ 3 c2j7aC_ 4 d2rdza1 5 c2bpbB_ 6 d1sp3a_ 7 d1fs7a_ 8 c1fs9A_ 9 c1oahA_ 10 d1oaha_ 11 c2p0bA_ 12 d1pbya1 13 d1jmxa1 14 c3f29A_ 15 c2vr0A_ 16 c2fwtA_ 17 c2j7aE_ 18 d1qdba_ 19 c3pmqA_ 20 d1ft5a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1fgja_ 99.9 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 2 c1fgjA_ 99.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase 3 c2j7aC_ 99.9 27 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 4 d2rdza1 98.6 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 5 c2bpbB_ 98.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 6 d1sp3a_ 98.5 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 7 d1fs7a_ 98.4 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 8 c1fs9A_ 98.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 9 c1oahA_ 98.4 16 PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). 10 d1oaha_ 98.4 16 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 11 c2p0bA_ 98.2 19 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb 12 d1pbya1 98.0 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 13 d1jmxa1 97.9 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 14 c3f29A_ 97.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite 15 c2vr0A_ 97.7 28 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 16 c2fwtA_ 97.7 24 PDB header:electron transport Chain: A: PDB Molecule:dhc, diheme cytochrome c; PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides 17 c2j7aE_ 97.6 29 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 18 d1qdba_ 97.6 24 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 19 c3pmqA_ 97.5 20 PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf 20 d1ft5a_ 97.5 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 21 c3oueA_ not modelled 97.0 18 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 22 d1mz4a_ not modelled 96.8 15 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 23 c2a3mA_ not modelled 96.7 35 PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form) 24 c1pbyA_ not modelled 96.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution 25 c1w5cT_ not modelled 96.5 15 PDB header:photosynthesis Chain: T: PDB Molecule:cytochrome c-550; PDBTitle: photosystem ii from thermosynechococcus elongatus 26 c3ouqA_ not modelled 96.5 21 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996 27 d1f1ca_ not modelled 96.4 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 28 c1kb0A_ not modelled 96.3 25 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni 29 d1h9xa1 not modelled 96.2 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 30 c1jrxA_ not modelled 96.2 29 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 31 c3cp5A_ not modelled 96.2 25 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: cytochrome c from rhodothermus marinus 32 d1e29a_ not modelled 96.2 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 33 c2zonG_ not modelled 96.2 34 PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c 34 d1nira1 not modelled 96.1 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 35 c2e84A_ not modelled 96.0 18 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion 36 d1e2rb1 not modelled 96.0 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 37 d1i77a_ not modelled 95.9 36 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 38 d1d4ca1 not modelled 95.9 24 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 39 c1jmxA_ not modelled 95.8 27 PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida 40 d1wada_ not modelled 95.8 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 41 c1qo8A_ not modelled 95.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 42 d1qo8a1 not modelled 95.7 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 43 c1kv9A_ not modelled 95.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5 44 c2xtsD_ not modelled 95.7 25 PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus 45 d1j0pa_ not modelled 95.6 34 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 46 c3a9fA_ not modelled 95.5 22 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the c-terminal domain of cytochrome cz2 from chlorobium tepidum 47 d1hzua1 not modelled 95.4 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 48 d1kv9a1 not modelled 95.4 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain 49 d1ls9a_ not modelled 95.4 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 50 d2i5nc1 not modelled 95.4 14 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 51 c2jblC_ not modelled 95.4 14 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 52 c3dmiA_ not modelled 95.3 30 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c6; PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution 53 d2ctha_ not modelled 95.2 35 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 54 d1wvec1 not modelled 95.2 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 55 d1kb0a1 not modelled 95.1 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain 56 d1qksa1 not modelled 95.1 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 57 d1ytca_ not modelled 95.0 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 58 c2zooA_ not modelled 94.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 59 d1ccra_ not modelled 94.9 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 60 c2l4dA_ not modelled 94.9 18 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 61 d1yeba_ not modelled 94.8 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 62 d1fcdc1 not modelled 94.8 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 63 d1ycca_ not modelled 94.8 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 64 c1nnoA_ not modelled 94.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 65 d1up9a_ not modelled 94.7 31 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 66 d2gc4d1 not modelled 94.7 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 67 d1ofwa_ not modelled 94.7 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 68 d1c75a_ not modelled 94.7 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 69 d1cyja_ not modelled 94.7 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 70 d1hj3a1 not modelled 94.7 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 71 d1lfma_ not modelled 94.7 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 72 c2d0wA_ not modelled 94.6 18 PDB header:electron transport Chain: A: PDB Molecule:cytochrome cl; PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans 73 d1dy7b1 not modelled 94.6 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 74 d1wejf_ not modelled 94.6 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 75 c3dr0B_ not modelled 94.5 22 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002 76 d2cvca1 not modelled 94.5 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 77 d1duwa_ not modelled 94.5 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 78 c2w9kA_ not modelled 94.5 27 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 79 d1ctja_ not modelled 94.4 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 80 c2cvcA_ not modelled 94.4 23 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough) 81 d1c52a_ not modelled 94.4 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 82 d2cy3a_ not modelled 94.4 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 83 d1f1fa_ not modelled 94.4 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 84 d1gyoa_ not modelled 94.1 32 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 85 d1hroa_ not modelled 94.1 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 86 d1y0pa1 not modelled 94.1 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 87 c1w2lA_ not modelled 94.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 88 d1cc5a_ not modelled 94.1 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 89 d1fcdc2 not modelled 94.0 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 90 d1j3sa_ not modelled 94.0 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 91 c2v07A_ not modelled 94.0 22 PDB header:photosynthesis Chain: A: PDB Molecule:cytochrome c6; PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant 92 c2zxyA_ not modelled 94.0 17 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 93 d2c8sa1 not modelled 93.9 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 94 d1co6a_ not modelled 93.9 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 95 d1aqea_ not modelled 93.9 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 96 c3o0rC_ not modelled 93.8 24 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 97 c2zzsW_ not modelled 93.8 26 PDB header:electron transport Chain: W: PDB Molecule: PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633 98 d1cnoa_ not modelled 93.8 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 99 d1kx7a_ not modelled 93.7 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 100 c3cu4A_ not modelled 93.7 28 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 101 d1m1qa_ not modelled 93.6 34 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 102 d1gdva_ not modelled 93.6 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 103 d1h1oa2 not modelled 93.5 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 104 d1m70a1 not modelled 93.3 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 105 d1c6ra_ not modelled 93.3 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 106 d1c53a_ not modelled 93.1 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 107 c1eysC_ not modelled 92.9 22 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 108 d1eysc_ not modelled 92.9 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 109 d19hca_ not modelled 92.5 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 110 c1z1nX_ not modelled 92.3 17 PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas 111 d1c6sa_ not modelled 92.0 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 112 d1m70a2 not modelled 92.0 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 113 d1dvha_ not modelled 91.8 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 114 c1gq1B_ not modelled 91.8 22 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 115 d1gksa_ not modelled 91.8 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 116 c1yiqA_ not modelled 91.2 22 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism. 117 c1fcdD_ not modelled 91.0 21 PDB header:electron transport(flavocytochrome) Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution 118 d1qn2a_ not modelled 90.9 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 119 c2d0sA_ not modelled 90.6 31 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 120 c3m97X_ not modelled 90.4 17 PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0