PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2cvcA_

Fold library id	PDB Header	Molecule	Title
c2cvcA_	PDB header: electron transport	Chain: A: PDB Molecule: high-molecular-weight cytochrome c precursor;	PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough)

Links to external resources
Added to library: Tue Mar 16 13:33:27 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E K R A D L I E I G A M E R F G K L D L P K V A F R H D Q H T T A V T G M G K D C A A C H K S K D G K M S L K F M R L D D N S A A E L K E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G G G S
S S
T T
G G G T
T T
S S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y H A N C I G C H T D L A K A G K K T G P Q D G E C R S C H N P K P S A A S S W K E I G F D K S L H Y R H V A S K A I K P V G D P Q K N C G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
S S
S S
T
T T S
S S S S
G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A C H H V Y D E A S K K L V W G K N K E D S C R A C H G E K P V D K R P A L D T A A H T A C I S C H M D V A K T K A E T G P V N C A G C H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G T
T T T T
T T
G G G T
S S
B T T B
T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence P E A Q A K F K V V R E V P R L D R G Q P D A A L I L P V P G K D A P R E M K G T M K P V A F D H K A H E A K A N D C R T C H H V R I D T C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S
S S
S
S S S S S
S
S S
S T T T S S S
S S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence T A C H T V N G T A D S K F V Q L E K A M H Q P D S M R S C V G C H N T R V Q Q P T C A G C H G F I K P T K S D A Q C G V C H V A A P G F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T
G G G T T
T T
T T S T T S T T
T T T B
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence A K Q V E A G A L L N L K A E Q R S Q V A A S M L S A R P Q P K G T F D L N D I P E K V V I G S I A K E Y Q P S E F P H R K I V K T L I A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T
S
G G G S
S
T T
S S B

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence I G E D K L A A T F H I E K G T L C Q G C H H N S P A S L T P P K C A S C H G K P D R P G L K A A Y H Q Q C M G C H D R M K I E K P A N T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T T G G G G T S T T S
S
S S
G G G T S S
T
S S
T T

. . . . . . . . . 500

Sequence C V D C H K E R A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S
B S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	K	R	A	D	L	I	E	I	G	A	M	E	R	F	G	K	L	D	L	P	K	V	A	F	R	H	D	Q	H	T	T	A	V	T	G	M	G	K	D	C	A	A	C	H	K	S	K	D	G	K	M	S	L	K	F	M	R	L	D	D	N	S	A	A	E	L	K	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S							G	G	G	G	G	S			S	S																	T	T			G	G	G	T					T	T				S	S	S	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	H	A	N	C	I	G	C	H	T	D	L	A	K	A	G	K	K	T	G	P	Q	D	G	E	C	R	S	C	H	N	P	K	P	S	A	A	S	S	W	K	E	I	G	F	D	K	S	L	H	Y	R	H	V	A	S	K	A	I	K	P	V	G	D	P	Q	K	N	C	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T							T	T						S		S	S		S	S																			T		T	T	S				S	S	S	S			G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	C	H	H	V	Y	D	E	A	S	K	K	L	V	W	G	K	N	K	E	D	S	C	R	A	C	H	G	E	K	P	V	D	K	R	P	A	L	D	T	A	A	H	T	A	C	I	S	C	H	M	D	V	A	K	T	K	A	E	T	G	P	V	N	C	A	G	C	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	T						T	T	T	T						T	T					G	G	G	T			S	S		B	T	T	B																					T	T	S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	P	E	A	Q	A	K	F	K	V	V	R	E	V	P	R	L	D	R	G	Q	P	D	A	A	L	I	L	P	V	P	G	K	D	A	P	R	E	M	K	G	T	M	K	P	V	A	F	D	H	K	A	H	E	A	K	A	N	D	C	R	T	C	H	H	V	R	I	D	T	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S				S	S						S	S			S										S	S	S	S	S						S														S	S		S	T	T	T	S	S	S		S	S		S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	T	A	C	H	T	V	N	G	T	A	D	S	K	F	V	Q	L	E	K	A	M	H	Q	P	D	S	M	R	S	C	V	G	C	H	N	T	R	V	Q	Q	P	T	C	A	G	C	H	G	F	I	K	P	T	K	S	D	A	Q	C	G	V	C	H	V	A	A	P	G	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T			T	T			G	G	G	T	T										T	T		T	T	S									T	T	S								T	T											T	T	T	B				T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	A	K	Q	V	E	A	G	A	L	L	N	L	K	A	E	Q	R	S	Q	V	A	A	S	M	L	S	A	R	P	Q	P	K	G	T	F	D	L	N	D	I	P	E	K	V	V	I	G	S	I	A	K	E	Y	Q	P	S	E	F	P	H	R	K	I	V	K	T	L	I	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T	T	T	T																	S									G	G	G	S		S						T	T		S	S	B
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	G	E	D	K	L	A	A	T	F	H	I	E	K	G	T	L	C	Q	G	C	H	H	N	S	P	A	S	L	T	P	P	K	C	A	S	C	H	G	K	P	D	R	P	G	L	K	A	A	Y	H	Q	Q	C	M	G	C	H	D	R	M	K	I	E	K	P	A	N	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T										S	T	T	T	G	G	G	G	T	S	T	T	S		S		S	S				G	G	G	T	S	S																							T			S	S		T	T
	.	.	.	.	.	.	.	.	.	500
Sequence	C	V	D	C	H	K	E	R	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S	S		B	S