Phyre 2 Results for P52005

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P52005
Date | Thu Jan 5 12:04:53 GMT 2012
Unique Job ID | f6cb57de6d012571

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1fgja_
Top template information
Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
Confidence and coverage
Confidence: | 99.9% | Coverage: | 74%
271 residues ( 74% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | G | K | K | R | I | G | L | L | F | L | L | I | A | V | V | V | G | G | G | G | L | L | L | A | Q | K | V | L | H | K | T | S | D | T | A | F | C | L | S | C | H | S | M | S | K | P | F | E | E | Y | Q | G | T | V | H | F | S | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Q | K | G | I | R | A | E | C | A | D | C | H | I | P | K | S | G | M | D | Y | L | F | A | K | L | K | A | S | K | D | I | Y | H | E | F | V | S | G | K | I | D | S | D | D | K | F | E | A | H | R | Q | E | M | A | E | T | V | W | K | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | K | A | T | D | S | A | T | C | R | S | C | H | S | F | D | A | M | D | I | A | S | Q | S | E | S | A | Q | K | M | H | N | K | A | Q | K | D | S | E | T | C | I | D | C | H | K | G | I | A | H | F | P | P | E | I | K | M | D | D | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  | ? | ? |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | A | H | E | L | E | S | Q | A | A | T | S | V | T | N | G | A | H | I | Y | P | F | K | T | S | H | I | G | E | L | A | T | V | N | P | G | T | D | L | T | V | V | D | A | S | G | K | Q | P | I | V | L | L | Q | G | Y | Q | M | Q | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | S | E | N | T | L | Y | L | A | A | G | Q | R | L | A | L | A | T | L | S | E | E | G | I | K | A | L | T | V | N | G | E | W | Q | A | D | E | Y | G | N | Q | W | R | Q | A | S | L | Q | G | A | L | T | D | P | A | L | A | D | R | K | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | L | W | Q | Y | A | E | K | L | D | D | T | Y | C | A | G | C | H | A | P | I | A | A | D | H | Y | T | V | N | A | W | P | S | I | A | K | G | M | G | A | R | T | S | M | S | E | N | E | L | D | I | L | T | R | Y | F | Q | Y | N | A | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | .
Sequence |  | D | I | T | E | K | Q
Secondary structure |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1fgja_ |

### PDB 1fgj chain A

Region: 35 - 357
Aligned: 271
Modelled: 290
Confidence: 99.9%
Identity: 17%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
2 |
| c1fgjA_ |

### PDB 1fgj chain A

Region: 35 - 357
Aligned: 271
Modelled: 290
Confidence: 99.9%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxylamine oxidoreductase;
PDBTitle: x-ray structure of hydroxylamine oxidoreductase

Phyre2
3 |
| c2j7aC_ |

### PDB 2j7a chain C

Region: 11 - 177
Aligned: 136
Modelled: 156
Confidence: 99.9%
Identity: 27%
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris

Phyre2
4 |
| d2rdza1 |

### PDB 2rdz chain A domain 1

Region: 34 - 206
Aligned: 154
Modelled: 154
Confidence: 98.6%
Identity: 21%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
5 |
| c2bpbB_ |

### PDB 2bpb chain B

Region: 305 - 358
Aligned: 54
Modelled: 54
Confidence: 98.6%
Identity: 17%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella

Phyre2
6 |
| d1sp3a_ |

### PDB 1sp3 chain A

Region: 36 - 223
Aligned: 166
Modelled: 175
Confidence: 98.5%
Identity: 18%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
7 |
| d1fs7a_ |

### PDB 1fs7 chain A

Region: 34 - 206
Aligned: 148
Modelled: 155
Confidence: 98.4%
Identity: 17%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
8 |
| c1fs9A_ |

### PDB 1fs9 chain A

Region: 34 - 206
Aligned: 148
Modelled: 155
Confidence: 98.4%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex

Phyre2
9 |
| c1oahA_ |

### PDB 1oah chain A

Region: 34 - 206
Aligned: 141
Modelled: 154
Confidence: 98.4%
Identity: 16%
PDB header:reductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).

Phyre2
10 |
| d1oaha_ |

### PDB 1oah chain A

Region: 34 - 206
Aligned: 141
Modelled: 154
Confidence: 98.4%
Identity: 16%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
11 |
| c2p0bA_ |

### PDB 2p0b chain A

Region: 34 - 165
Aligned: 123
Modelled: 132
Confidence: 98.2%
Identity: 19%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-type protein nrfb;
PDBTitle: crystal structure of chemically-reduced e.coli nrfb

Phyre2
12 |
| d1pbya1 |

### PDB 1pby chain A domain 1

Region: 305 - 358
Aligned: 54
Modelled: 54
Confidence: 98.0%
Identity: 20%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2

Phyre2
13 |
| d1jmxa1 |

### PDB 1jmx chain A domain 1

Region: 305 - 358
Aligned: 54
Modelled: 54
Confidence: 97.9%
Identity: 20%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2

Phyre2
14 |
| c3f29A_ |

### PDB 3f29 chain A

Region: 35 - 165
Aligned: 117
Modelled: 131
Confidence: 97.8%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:eight-heme nitrite reductase;
PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite

Phyre2
15 |
| c2vr0A_ |

### PDB 2vr0 chain A

Region: 35 - 134
Aligned: 68
Modelled: 72
Confidence: 97.7%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor

Phyre2
16 |
| c2fwtA_ |

### PDB 2fwt chain A

Region: 306 - 364
Aligned: 59
Modelled: 59
Confidence: 97.7%
Identity: 24%
PDB header:electron transport
Chain: A: PDB Molecule:dhc, diheme cytochrome c;
PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides

Phyre2
17 |
| c2j7aE_ |

### PDB 2j7a chain E

Region: 31 - 134
Aligned: 69
Modelled: 76
Confidence: 97.6%
Identity: 29%
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris

Phyre2
18 |
| d1qdba_ |

### PDB 1qdb chain A

Region: 26 - 134
Aligned: 76
Modelled: 80
Confidence: 97.6%
Identity: 24%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
19 |
| c3pmqA_ |

### PDB 3pmq chain A

Region: 35 - 165
Aligned: 112
Modelled: 131
Confidence: 97.5%
Identity: 20%
PDB header:electron transport
Chain: A: PDB Molecule:decaheme cytochrome c mtrf;
PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf

Phyre2
20 |
| d1ft5a_ |

### PDB 1ft5 chain A

Region: 35 - 214
Aligned: 159
Modelled: 180
Confidence: 97.5%
Identity: 18%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1fgja_ |
|  | 99.9 | 17 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
2 | c1fgjA_ |
|  | 99.9 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase
3 | c2j7aC_ |
|  | 99.9 | 27 | PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
4 | d2rdza1 |
|  | 98.6 | 21 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
5 | c2bpbB_ |
|  | 98.6 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella
6 | d1sp3a_ |
|  | 98.5 | 18 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
7 | d1fs7a_ |
|  | 98.4 | 17 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
8 | c1fs9A_ |
|  | 98.4 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex
9 | c1oahA_ |
|  | 98.4 | 16 | PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).
10 | d1oaha_ |
|  | 98.4 | 16 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
11 | c2p0bA_ |
|  | 98.2 | 19 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb
12 | d1pbya1 |
|  | 98.0 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
13 | d1jmxa1 |
|  | 97.9 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
14 | c3f29A_ |
|  | 97.8 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite
15 | c2vr0A_ |
|  | 97.7 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor
16 | c2fwtA_ |
|  | 97.7 | 24 | PDB header:electron transport Chain: A: PDB Molecule:dhc, diheme cytochrome c; PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides
17 | c2j7aE_ |
|  | 97.6 | 29 | PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
18 | d1qdba_ |
|  | 97.6 | 24 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
19 | c3pmqA_ |
|  | 97.5 | 20 | PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf
20 | d1ft5a_ |
|  | 97.5 | 18 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
21 | c3oueA_ |
| not modelled | 97.0 | 18 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996
22 | d1mz4a_ |
| not modelled | 96.8 | 15 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
23 | c2a3mA_ |
| not modelled | 96.7 | 35 | PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form)
24 | c1pbyA_ |
| not modelled | 96.6 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
25 | c1w5cT_ |
| not modelled | 96.5 | 15 | PDB header:photosynthesis Chain: T: PDB Molecule:cytochrome c-550; PDBTitle: photosystem ii from thermosynechococcus elongatus
26 | c3ouqA_ |
| not modelled | 96.5 | 21 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996
27 | d1f1ca_ |
| not modelled | 96.4 | 14 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
28 | c1kb0A_ |
| not modelled | 96.3 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni
29 | d1h9xa1 |
| not modelled | 96.2 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
30 | c1jrxA_ |
| not modelled | 96.2 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
31 | c3cp5A_ |
| not modelled | 96.2 | 25 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: cytochrome c from rhodothermus marinus
32 | d1e29a_ |
| not modelled | 96.2 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
33 | c2zonG_ |
| not modelled | 96.2 | 34 | PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
34 | d1nira1 |
| not modelled | 96.1 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
35 | c2e84A_ |
| not modelled | 96.0 | 18 | PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion
36 | d1e2rb1 |
| not modelled | 96.0 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
37 | d1i77a_ |
| not modelled | 95.9 | 36 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
38 | d1d4ca1 |
| not modelled | 95.9 | 24 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
39 | c1jmxA_ |
| not modelled | 95.8 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
40 | d1wada_ |
| not modelled | 95.8 | 26 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
41 | c1qo8A_ |
| not modelled | 95.8 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
42 | d1qo8a1 |
| not modelled | 95.7 | 20 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
43 | c1kv9A_ |
| not modelled | 95.7 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
44 | c2xtsD_ |
| not modelled | 95.7 | 25 | PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
45 | d1j0pa_ |
| not modelled | 95.6 | 34 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
46 | c3a9fA_ |
| not modelled | 95.5 | 22 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the c-terminal domain of cytochrome cz2 from chlorobium tepidum
47 | d1hzua1 |
| not modelled | 95.4 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
48 | d1kv9a1 |
| not modelled | 95.4 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
49 | d1ls9a_ |
| not modelled | 95.4 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
50 | d2i5nc1 |
| not modelled | 95.4 | 14 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit)
51 | c2jblC_ |
| not modelled | 95.4 | 14 | PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis
52 | c3dmiA_ |
| not modelled | 95.3 | 30 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c6; PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
53 | d2ctha_ |
| not modelled | 95.2 | 35 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
54 | d1wvec1 |
| not modelled | 95.2 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
55 | d1kb0a1 |
| not modelled | 95.1 | 14 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
56 | d1qksa1 |
| not modelled | 95.1 | 26 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
57 | d1ytca_ |
| not modelled | 95.0 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
58 | c2zooA_ |
| not modelled | 94.9 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
59 | d1ccra_ |
| not modelled | 94.9 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
60 | c2l4dA_ |
| not modelled | 94.9 | 18 | PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
61 | d1yeba_ |
| not modelled | 94.8 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
62 | d1fcdc1 |
| not modelled | 94.8 | 27 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
63 | d1ycca_ |
| not modelled | 94.8 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
64 | c1nnoA_ |
| not modelled | 94.8 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa
65 | d1up9a_ |
| not modelled | 94.7 | 31 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
66 | d2gc4d1 |
| not modelled | 94.7 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
67 | d1ofwa_ |
| not modelled | 94.7 | 27 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
68 | d1c75a_ |
| not modelled | 94.7 | 17 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
69 | d1cyja_ |
| not modelled | 94.7 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
70 | d1hj3a1 |
| not modelled | 94.7 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
71 | d1lfma_ |
| not modelled | 94.7 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
72 | c2d0wA_ |
| not modelled | 94.6 | 18 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome cl; PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans
73 | d1dy7b1 |
| not modelled | 94.6 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
74 | d1wejf_ |
| not modelled | 94.6 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
75 | c3dr0B_ |
| not modelled | 94.5 | 22 | PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002
76 | d2cvca1 |
| not modelled | 94.5 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
77 | d1duwa_ |
| not modelled | 94.5 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
78 | c2w9kA_ |
| not modelled | 94.5 | 27 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c
79 | d1ctja_ |
| not modelled | 94.4 | 29 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
80 | c2cvcA_ |
| not modelled | 94.4 | 23 | PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough)
81 | d1c52a_ |
| not modelled | 94.4 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
82 | d2cy3a_ |
| not modelled | 94.4 | 21 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
83 | d1f1fa_ |
| not modelled | 94.4 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
84 | d1gyoa_ |
| not modelled | 94.1 | 32 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
85 | d1hroa_ |
| not modelled | 94.1 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
86 | d1y0pa1 |
| not modelled | 94.1 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
87 | c1w2lA_ |
| not modelled | 94.1 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
88 | d1cc5a_ |
| not modelled | 94.1 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
89 | d1fcdc2 |
| not modelled | 94.0 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
90 | d1j3sa_ |
| not modelled | 94.0 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
91 | c2v07A_ |
| not modelled | 94.0 | 22 | PDB header:photosynthesis Chain: A: PDB Molecule:cytochrome c6; PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant
92 | c2zxyA_ |
| not modelled | 94.0 | 17 | PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
93 | d2c8sa1 |
| not modelled | 93.9 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
94 | d1co6a_ |
| not modelled | 93.9 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
95 | d1aqea_ |
| not modelled | 93.9 | 18 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
96 | c3o0rC_ |
| not modelled | 93.8 | 24 | PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
97 | c2zzsW_ |
| not modelled | 93.8 | 26 | PDB header:electron transport Chain: W: PDB Molecule: PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
98 | d1cnoa_ |
| not modelled | 93.8 | 28 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
99 | d1kx7a_ |
| not modelled | 93.7 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
100 | c3cu4A_ |
| not modelled | 93.7 | 28 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens
101 | d1m1qa_ |
| not modelled | 93.6 | 34 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
102 | d1gdva_ |
| not modelled | 93.6 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
103 | d1h1oa2 |
| not modelled | 93.5 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
104 | d1m70a1 |
| not modelled | 93.3 | 26 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
105 | d1c6ra_ |
| not modelled | 93.3 | 17 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
106 | d1c53a_ |
| not modelled | 93.1 | 29 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
107 | c1eysC_ |
| not modelled | 92.9 | 22 | PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
108 | d1eysc_ |
| not modelled | 92.9 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit)
109 | d19hca_ |
| not modelled | 92.5 | 27 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
110 | c1z1nX_ |
| not modelled | 92.3 | 17 | PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas
111 | d1c6sa_ |
| not modelled | 92.0 | 17 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
112 | d1m70a2 |
| not modelled | 92.0 | 28 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
113 | d1dvha_ |
| not modelled | 91.8 | 29 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
114 | c1gq1B_ |
| not modelled | 91.8 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form
115 | d1gksa_ |
| not modelled | 91.8 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
116 | c1yiqA_ |
| not modelled | 91.2 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism.
117 | c1fcdD_ |
| not modelled | 91.0 | 21 | PDB header:electron transport(flavocytochrome) Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
118 | d1qn2a_ |
| not modelled | 90.9 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
119 | c2d0sA_ |
| not modelled | 90.6 | 31 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
120 | c3m97X_ |
| not modelled | 90.4 | 17 | PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0