Phyre 2 alignment of P52005 with c1p84D_

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Job Description | P52005
Confidence | 88.96% | Date | Thu Jan 5 12:04:53 GMT 2012
Rank | 127 | Aligned Residues | 30
% Identity | 17% | Template | c1p84D_
PDB info | PDB header:oxidoreductase | Chain: D: PDB Molecule:cytochrome c1, heme protein; | PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
Resolution | 2.50 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 289 | 290 | . | . | . | . | . | . |  |  | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | L | T | D | P | A | L | A | . | . | D | R | K | P | L | W | Q | Y | A | E | K | L | D | D | T | Y | C | A | G | C | H | A | P
Query Conservation |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | W | S | H | N | G | P | F | E | T | F | D | H | A | S | I | . | R | R | G | Y | Q | V | Y | R | E | V | C | A | A | C | H | S | L
Template Known Secondary structure |  |  | T | T |  | S | T | T |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | T | G | G | G | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |  | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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