17/01/2012 19:43:13 : INFO  : Run start: Tue Jan 17 19:43:12 GMT 2012
17/01/2012 19:43:18 : INFO  : Initialised job
17/01/2012 19:43:19 : INFO  : Renaming log file 'phyre2_20120117_194311.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f6cb57de6d012571/phyre_20120117_194311.log'
17/01/2012 19:43:20 : INFO  : Initialised job:
Sequence
>batch____
MRGKKRIGLLFLLIAVVVGGGGLLLAQKVLHKTSDTAFCLSCHSMSKPFEEYQGTVHFSN
QKGIRAECADCHIPKSGMDYLFAKLKASKDIYHEFVSGKIDSDDKFEAHRQEMAETVWKE
LKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKDSETCIDCHKGIAHFPPEIKMDDN
AAHELESQAATSVTNGAHIYPFKTSHIGELATVNPGTDLTVVDASGKQPIVLLQGYQMQG
SENTLYLAAGQRLALATLSEEGIKALTVNGEWQADEYGNQWRQASLQGALTDPALADRKP
LWQYAEKLDDTYCAGCHAPIAADHYTVNAWPSIAKGMGARTSMSENELDILTRYFQYNAK
DITEKQ

17/01/2012 19:43:21 : INFO  : Checked sequence
17/01/2012 19:43:23 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 19:43:23 : INFO  : PSI-BLAST 3 iterations
17/01/2012 19:45:08 : INFO  : PSI-BLAST 5 iterations
17/01/2012 19:47:10 : INFO  : Finished PSI-BLAST
17/01/2012 19:47:13 : INFO  : Running Buildali to generate a3m file
17/01/2012 19:53:40 : INFO  : Converting to HMM
17/01/2012 19:53:42 : INFO  : Calibrating HMM
17/01/2012 19:53:58 : INFO  : Searching HMM database
17/01/2012 20:02:28 : INFO  : Finished buildali
17/01/2012 20:02:29 : INFO  : Predicting secondary structure
17/01/2012 20:02:37 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 20:02:38 : INFO  : Predicting Disordered regions
17/01/2012 20:02:42 : INFO  : Predicted Disorder (Disopred)
17/01/2012 20:02:44 : INFO  : Running memsat_svm check
17/01/2012 20:06:06 : INFO  : Running memsat_svm full
17/01/2012 20:12:06 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f6cb57de6d012571'
17/01/2012 20:12:08 : INFO  : Initialising fold library search
17/01/2012 20:12:10 : INFO  : Initialised search input
17/01/2012 20:12:12 : INFO  : Building Ensemble models
17/01/2012 20:12:16 : INFO  : Building hh.d1fgja_.model.1.pdb
17/01/2012 20:12:28 : INFO  : Building hh.c1fgjA_.model.2.pdb
17/01/2012 20:12:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f6cb57de6d012571/hh.c1fgjA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f6cb57de6d012571/c1fgjA_.2.pdb
17/01/2012 20:12:41 : INFO  : Building hh.c2j7aC_.model.3.pdb
17/01/2012 20:12:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f6cb57de6d012571/hh.c2j7aC_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f6cb57de6d012571/c2j7aC_.3.pdb
17/01/2012 20:12:55 : INFO  : Building d1fgja_.1.pdb
17/01/2012 20:13:08 : INFO  : Building c1fgjA_.2.pdb
17/01/2012 20:13:18 : INFO  : Building c2j7aC_.3.pdb
17/01/2012 20:13:31 : INFO  : Building d2rdza1.4.pdb
17/01/2012 20:13:41 : INFO  : Building c2bpbB_.5.pdb
17/01/2012 20:13:52 : INFO  : Building d1sp3a_.6.pdb
17/01/2012 20:14:03 : INFO  : Building d1fs7a_.7.pdb
17/01/2012 20:14:14 : INFO  : Building c1fs9A_.8.pdb
17/01/2012 20:14:28 : INFO  : Building c1oahA_.9.pdb
17/01/2012 20:14:40 : INFO  : Building d1oaha_.10.pdb
17/01/2012 20:14:51 : INFO  : Building c2p0bA_.11.pdb
17/01/2012 20:15:02 : INFO  : Building d1pbya1.12.pdb
17/01/2012 20:15:15 : INFO  : Building d1jmxa1.13.pdb
17/01/2012 20:15:26 : INFO  : Building c3f29A_.14.pdb
17/01/2012 20:15:37 : INFO  : Building c2vr0A_.15.pdb
17/01/2012 20:15:49 : INFO  : Building c2fwtA_.16.pdb
17/01/2012 20:16:01 : INFO  : Building c2j7aE_.17.pdb
17/01/2012 20:16:13 : INFO  : Building d1qdba_.18.pdb
17/01/2012 20:16:24 : INFO  : Building c3pmqA_.19.pdb
17/01/2012 20:16:34 : INFO  : Building d1ft5a_.20.pdb
17/01/2012 20:17:26 : INFO  : Finished HH model building
17/01/2012 20:17:28 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 20:18:20 : INFO  : html domain output complete ID 'f6cb57de6d012571'
17/01/2012 21:08:23 : INFO  : Run end  : Tue Jan 17 21:08:22 GMT 2012
