Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9T4
DateThu Jan 5 11:11:18 GMT 2012
Unique Job IDf69ce9be839645e7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1lqaa_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
Confidence and coverage
Confidence:100.0% Coverage:100%
346 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE
Secondary structure 
SS confidence 
Disorder  ????
??
????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR
Secondary structure 
SS confidence 
Disorder  ?
??????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN
Secondary structure 
SS confidence 
Disorder 
???????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQP
Secondary structure 
SS confidence 
Disorder 
???????????
Disorder confidence 
 
   .........310.........320.........330.........340......
Sequence  FVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVYTYPAP
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1lqa chain A

3D model

Region: 1 - 346
Aligned: 346
Modelled: 346
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3erp chain A

3D model

Region: 1 - 339
Aligned: 294
Modelled: 300
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium

Phyre2

PDB 3eau chain A domain 1

3D model

Region: 3 - 343
Aligned: 312
Modelled: 324
Confidence: 100.0%
Identity: 32%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3lut chain A

3D model

Region: 3 - 343
Aligned: 312
Modelled: 317
Confidence: 100.0%
Identity: 32%
PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2;
PDBTitle: a structural model for the full-length shaker potassium channel kv1.2

Phyre2

PDB 1pyf chain A

3D model

Region: 2 - 340
Aligned: 304
Modelled: 315
Confidence: 100.0%
Identity: 29%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3n2t chain A

3D model

Region: 1 - 344
Aligned: 311
Modelled: 314
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans

Phyre2

PDB 1pz1 chain A

3D model

Region: 1 - 344
Aligned: 310
Modelled: 313
Confidence: 100.0%
Identity: 30%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1gve chain A

3D model

Region: 14 - 346
Aligned: 300
Modelled: 307
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3n6q chain F

3D model

Region: 1 - 342
Aligned: 295
Modelled: 305
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: F: PDB Molecule:yghz aldo-keto reductase;
PDBTitle: crystal structure of yghz from e. coli

Phyre2

PDB 1ur3 chain M

3D model

Region: 1 - 342
Aligned: 292
Modelled: 295
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 2bp1 chain C

3D model

Region: 12 - 346
Aligned: 299
Modelled: 309
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2;
PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph

Phyre2

PDB 1q5m chain A

3D model

Region: 1 - 343
Aligned: 294
Modelled: 312
Confidence: 100.0%
Identity: 25%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1j96 chain A

3D model

Region: 1 - 346
Aligned: 298
Modelled: 305
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1ynp chain A

3D model

Region: 1 - 339
Aligned: 272
Modelled: 281
Confidence: 100.0%
Identity: 33%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form)

Phyre2

PDB 3h7u chain A

3D model

Region: 1 - 344
Aligned: 283
Modelled: 311
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c9

Phyre2

PDB 1afs chain A

3D model

Region: 1 - 346
Aligned: 298
Modelled: 317
Confidence: 100.0%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1us0 chain A

3D model

Region: 1 - 342
Aligned: 290
Modelled: 310
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1mi3 chain A

3D model

Region: 1 - 346
Aligned: 295
Modelled: 318
Confidence: 100.0%
Identity: 26%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1frb chain A

3D model

Region: 3 - 345
Aligned: 290
Modelled: 301
Confidence: 100.0%
Identity: 24%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1s1p chain A

3D model

Region: 2 - 346
Aligned: 296
Modelled: 313
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2
1
d1lqaa_
2
c3erpA_
3
d3eaua1
4
c3lutA_
5
d1pyfa_
6
c3n2tA_
7
d1pz1a_
8
d1gvea_
9
c3n6qF_
10
d1ur3m_
11
c2bp1C_
12
d1q5ma_
13
d1j96a_
14
c1ynpA_
15
c3h7uA_
16
d1afsa_
17
d1us0a_
18
d1mi3a_
19
d1frba_
20
d1s1pa_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1lqaa_
100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
2c3erpA_
100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium
3d3eaua1
100.0 32 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
4c3lutA_
100.0 32 PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2;
PDBTitle: a structural model for the full-length shaker potassium channel kv1.2
5d1pyfa_
100.0 29 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
6c3n2tA_
100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans
7d1pz1a_
100.0 30 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
8d1gvea_
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
9c3n6qF_
100.0 31 PDB header:oxidoreductase
Chain: F: PDB Molecule:yghz aldo-keto reductase;
PDBTitle: crystal structure of yghz from e. coli
10d1ur3m_
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
11c2bp1C_
100.0 25 PDB header:oxidoreductase
Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2;
PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph
12d1q5ma_
100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
13d1j96a_
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
14c1ynpA_
100.0 33 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form)
15c3h7uA_
100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c9
16d1afsa_
100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
17d1us0a_
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
18d1mi3a_
100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
19d1frba_
100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
20d1s1pa_
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
21d1qwka_
not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
22d1hqta_
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
23c3buvB_
not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase;
PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a.
24c3f7jB_
not modelled 100.0 32 PDB header:oxidoreductase
Chain: B: PDB Molecule:yvgn protein;
PDBTitle: b.subtilis yvgn
25c3up8B_
not modelled 100.0 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b;
PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b
26c3h7rA_
not modelled 100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c8
27c1zgdB_
not modelled 100.0 24 PDB header:plant protein
Chain: B: PDB Molecule:chalcone reductase;
PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution
28d1ah4a_
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
29d1c9wa_
not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
30d2alra_
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
31c2wztA_
not modelled 100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form
32d1mzra_
not modelled 100.0 29 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
33c2bgsA_
not modelled 100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldose reductase;
PDBTitle: holo aldose reductase from barley
34d1vp5a_
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
35c3o0kB_
not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:aldo/keto reductase;
PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis
36d1hw6a_
not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
37c3b3dA_
not modelled 100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative morphine dehydrogenase;
PDBTitle: b.subtilis ytbe
38c1vbjB_
not modelled 100.0 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:prostaglandin f synthase;
PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei
39c3krbB_
not modelled 100.0 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:aldose reductase;
PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution
40c3ln3A_
not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodiol dehydrogenase;
PDBTitle: crystal structure of putative reductase (np_038806.2) from2 mus musculus at 1.18 a resolution
41d1olta_
not modelled 64.4 17 Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Oxygen-independent coproporphyrinogen III oxidase HemN
42d2aeba1
not modelled 55.7 10 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
43d1rioa_
not modelled 46.4 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
44c3l23A_
not modelled 45.3 10 PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution
45c3oqbF_
not modelled 45.0 10 PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
46c2ph5A_
not modelled 43.5 21 PDB header:transferase
Chain: A: PDB Molecule:homospermidine synthase;
PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54
47c2v5jB_
not modelled 41.0 6 PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
48c2vwtA_
not modelled 41.0 10 PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
49c3f6wE_
not modelled 40.7 16 PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
50c3bdkB_
not modelled 40.5 17 PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
51d1lmb3_
not modelled 40.0 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
52c3lmyA_
not modelled 38.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase subunit beta;
PDBTitle: the crystal structure of beta-hexosaminidase b in complex with2 pyrimethamine
53c3n2oA_
not modelled 38.2 17 PDB header:lyase
Chain: A: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus
54d1nowa1
not modelled 36.1 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
55c3eusB_
not modelled 34.5 16 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
56c3g8rA_
not modelled 34.3 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
57d1llib_
not modelled 33.5 19 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
58c1ydoC_
not modelled 33.3 13 PDB header:lyase
Chain: C: PDB Molecule:hmg-coa lyase;
PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
59d1r0ma1
not modelled 31.7 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
60c2hk1D_
not modelled 31.6 9 PDB header:isomerase
Chain: D: PDB Molecule:d-psicose 3-epimerase;
PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose
61d1rvka1
not modelled 31.6 15 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
62d1jpma1
not modelled 31.2 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
63c2l8nA_
not modelled 30.6 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
64c3bolB_
not modelled 30.4 9 PDB header:transferase
Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine
PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
65d1pq3a_
not modelled 30.3 7 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
66d1x87a_
not modelled 29.8 21 Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
67c3ik4A_
not modelled 29.7 15 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus
68c1nouA_
not modelled 29.1 21 PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase beta chain;
PDBTitle: native human lysosomal beta-hexosaminidase isoform b
69d1jfla1
not modelled 27.3 15 Fold:ATC-like
Superfamily:Aspartate/glutamate racemase
Family:Aspartate/glutamate racemase
70d2ceva_
not modelled 27.2 8 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
71c1xuzA_
not modelled 27.0 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
72c2nqlB_
not modelled 26.9 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens
73c3dx5A_
not modelled 26.6 13 PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
74d1d3va_
not modelled 26.3 10 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
75c2lcvA_
not modelled 26.3 14 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
76d1uwka_
not modelled 25.5 26 Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
77c3pg8B_
not modelled 25.4 15 PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
78c3b7hA_
not modelled 24.7 12 PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
79c3mmrA_
not modelled 24.2 4 PDB header:hydrolase
Chain: A: PDB Molecule:arginase;
PDBTitle: structure of plasmodium falciparum arginase in complex with abh
80c2pr7A_
not modelled 24.0 10 PDB header:hydrolase
Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family;
PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution
81c1sjaA_
not modelled 23.7 16 PDB header:lyase, isomerase
Chain: A: PDB Molecule:n-acylamino acid racemase;
PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine
82d1wuea1
not modelled 23.6 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
83c3dnfB_
not modelled 23.4 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
84c3m1rF_
not modelled 22.6 11 PDB header:hydrolase
Chain: F: PDB Molecule:formimidoylglutamase;
PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168
85d1nu5a1
not modelled 22.6 14 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
86d2hsga1
not modelled 20.4 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
87c1qbaA_
not modelled 20.3 23 PDB header:glycosyl hydrolase
Chain: A: PDB Molecule:chitobiase;
PDBTitle: bacterial chitobiase, glycosyl hydrolase family 20
88c3t76A_
not modelled 20.2 9 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
89d1y9qa1
not modelled 20.2 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
90c2fknC_
not modelled 20.2 27 PDB header:lyase
Chain: C: PDB Molecule:urocanate hydratase;
PDBTitle: crystal structure of urocanase from bacillus subtilis
91d2a6ca1
not modelled 19.9 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
92d1izca_
not modelled 19.9 13 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
93c1izcA_
not modelled 19.9 13 PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase
94c3smaD_
not modelled 19.0 20 PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf
95c2ovlA_
not modelled 19.0 18 PDB header:isomerase
Chain: A: PDB Molecule:putative racemase;
PDBTitle: crystal structure of a racemase from streptomyces2 coelicolor a3(2)
96c3nsnA_
not modelled 19.0 10 PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylglucosaminidase;
PDBTitle: crystal structure of insect beta-n-acetyl-d-hexosaminidase ofhex12 complexed with tmg-chitotriomycin
97d2chra1
not modelled 18.8 15 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
98c3nzqB_
not modelled 17.9 17 PDB header:lyase
Chain: B: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600
99d1f6ya_
not modelled 17.7 15 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Methyltetrahydrofolate-utiluzing methyltransferases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0