Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	I	S	D	L	N	Y	S	Q	H	I	T	L	A	D	N	F	K	Q	K	S	E	V	L	N	T	W	R	V	G	M	N	D	F	A	R	I	A	G	G	Q	D	N	R	R	N	I	L	S	P	G	A	F	L	E	F	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	I	F	T	L	G	Y	V	D	F	S	K	R	S	N	E	A	G	R	N	M	M	A	H	I	K	S	S	S	Y	S	K	D	T	N	G	N	E	K	M	K	F	Y	M	N	N	P	V	G	E	R	A	D	S	P	K	V	I	I	E
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?									?	?		?	?	?	?	?													?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	S	L	S	T	I	T	T	M	G	T	R	Q	G	H	T	A	I	I	F	P	Q	P	D	G	S	T	N	R	Y	E	G	K	S	F	E	R	K	D	E	S	S	L	H	L	I	T	N	K	V	L	A	C	Y	Q	S	E	A	N	K
Secondary structure
SS confidence
Disorder				?	?		?	?	?	?	?														?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	I	A	R	L	L	N	N	N	Q	E	L	N	N	L	Q	K	L	N	N	L	Q	K	L	N	N	L	L	K	L	N	N	I	Q	G	L	N	N	P	Q	E	L	N	N	P	Q	N	L	N	D	S	Q	E	L	N	N	S	Q	E	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	S	P	Q	E	L	N	D	P	Q	E	L	N	N	S	Q	D	L	N	N	S	K	V	S	C	T	V	S	V	D	S	T	I	T	G	L	L	K	E	P	L	N	N	A	L	L	A	I	R	N	E	H	L	L	L	M	P	H	V	C
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?														?		?												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	E	S	I	S	Y	L	L	G	E	K	G	I	L	E	E	I	D	K	L	Y	A	L	N	D	H	G	I	D	N	D	K	V	G	N	N	E	I	N	D	I	K	V	N	L	S	H	I	L	I	D	S	L	D	D	A	K	V	N	L
Secondary structure
SS confidence
Disorder																										?	?	?						?		?							?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		T	P	V	I	D	S	I	L	E	T	F	S	K	S	P	Y	I	N	D	V	R	I	L	D	W	C	F	N	K	S	M	Q	Y	F	D	D	T	K	K	I	K	H	A	C	S	V	I	N	H	I	N	L	R	S	D	Q	S	K	I	A
Secondary structure
SS confidence
Disorder																																			?																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		E	T	L	F	F	N	L	D	K	E	P	Y	K	N	S	P	E	L	Q	G	L	I	W	N	K	L	V	V	Y	V	N	E	F	N	L	S	N	R	E	K	T	N	L	I	Q	R	L	F	D	N	V	E	S	I	F	N	E	V	P	V
Secondary structure
SS confidence
Disorder										?	?		?	?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		S	I	L	V	N	D	I	F	M	N	D	F	F	M	K	N	P	E	M	I	N	W	Y	F	P	Q	L	L	K	S	Y	E	G	E	K	I	Y	F	D	N	L	K	Y	D	L	N	D	N	D	K	E	S	N	K	E	I	L	K	N	Q
Secondary structure
SS confidence
Disorder																																																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		P	D	N	V	I	K	E	K	L	N	N	E	Y	K	L	R	F	R	M	M	Q	T	I	L	Q	S	R	V	N	V	L	P	Y	I	N	E	Q	R	L	N	K	L	N	P	P	E	N	L	R	I	A	I	E	H	F	G	W	K	N	R
Secondary structure
SS confidence
Disorder						?																																			?	?	?		?														?	?	?
Disorder confidence
		.	.	.	.
Sequence		P	I	T	A
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qza chain A Region: 310 - 396 Aligned: 73 Modelled: 73 Confidence: 95.3% Identity: 27% PDB header:ligase Chain: A: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of salmonella effector protein sopa Phyre2 PDB 3nb2 chain B Region: 311 - 396 Aligned: 72 Modelled: 72 Confidence: 94.6% Identity: 31% PDB header:ligase Chain: B: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel Phyre2 PDB 1qcs chain A domain 2 Region: 98 - 154 Aligned: 52 Modelled: 57 Confidence: 24.9% Identity: 21% Fold: Cdc48 domain 2-like Superfamily: Cdc48 domain 2-like Family: Cdc48 domain 2-like Phyre2 PDB 1vmj chain A Region: 55 - 88 Aligned: 34 Modelled: 34 Confidence: 19.3% Identity: 24% Fold: YjbQ-like Superfamily: YjbQ-like Family: YjbQ-like Phyre2 PDB 1ve0 chain A Region: 55 - 88 Aligned: 31 Modelled: 34 Confidence: 18.3% Identity: 29% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein (st2072); PDBTitle: crystal structure of uncharacterized protein st2072 from sulfolobus2 tokodaii Phyre2 PDB 1vph chain A Region: 51 - 88 Aligned: 38 Modelled: 38 Confidence: 18.0% Identity: 24% Fold: YjbQ-like Superfamily: YjbQ-like Family: YjbQ-like Phyre2 PDB 2w8d chain B Region: 318 - 369 Aligned: 52 Modelled: 52 Confidence: 17.4% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis Phyre2 PDB 3ik5 chain A Region: 296 - 328 Aligned: 33 Modelled: 33 Confidence: 16.9% Identity: 33% PDB header:viral protein/signaling protein Chain: A: PDB Molecule:protein nef; PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide2 (a63-r80) Phyre2 PDB 1s4k chain A Region: 388 - 429 Aligned: 42 Modelled: 42 Confidence: 16.6% Identity: 24% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: YdiL-like Phyre2 PDB 2p6c chain B Region: 55 - 88 Aligned: 32 Modelled: 34 Confidence: 15.9% Identity: 28% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5. Phyre2 PDB 2py5 chain A domain 1 Region: 498 - 524 Aligned: 21 Modelled: 27 Confidence: 14.9% Identity: 33% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: DnaQ-like 3'-5' exonuclease Phyre2 PDB 2jyn chain A Region: 349 - 373 Aligned: 25 Modelled: 25 Confidence: 14.2% Identity: 36% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0368 protein ypl225w; PDBTitle: a novel solution nmr structure of protein yst0336 from2 saccharomyces cerevisiae. northeast structural genomics3 consortium target yt51/ontario centre for structural4 proteomics target yst0336 Phyre2 PDB 2xi1 chain A Region: 296 - 328 Aligned: 33 Modelled: 33 Confidence: 14.2% Identity: 39% PDB header:viral protein Chain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample Phyre2 PDB 1efn chain B Region: 296 - 328 Aligned: 33 Modelled: 33 Confidence: 13.4% Identity: 33% Fold: Regulatory factor Nef Superfamily: Regulatory factor Nef Family: Regulatory factor Nef Phyre2 PDB 3rbb chain A Region: 296 - 328 Aligned: 33 Modelled: 33 Confidence: 12.4% Identity: 39% PDB header:viral protein, protein binding Chain: A: PDB Molecule:protein nef; PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain Phyre2 PDB 2nef chain A Region: 296 - 328 Aligned: 33 Modelled: 33 Confidence: 12.1% Identity: 33% Fold: Regulatory factor Nef Superfamily: Regulatory factor Nef Family: Regulatory factor Nef Phyre2 PDB 3ebc chain A Region: 488 - 500 Aligned: 13 Modelled: 13 Confidence: 11.9% Identity: 62% PDB header:hydrolase/dna Chain: A: PDB Molecule:type-2 restriction enzyme hincii; PDBTitle: structure of n141a hincii with cognate dna Phyre2 PDB 1bf4 chain A Region: 29 - 61 Aligned: 33 Modelled: 33 Confidence: 11.8% Identity: 42% Fold: SH3-like barrel Superfamily: Chromo domain-like Family: "Histone-like" proteins from archaea Phyre2 PDB 1p82 chain A Region: 356 - 368 Aligned: 13 Modelled: 13 Confidence: 11.6% Identity: 62% PDB header:chaperone Chain: A: PDB Molecule:10 kda chaperonin; PDBTitle: nmr structure of 1-25 fragment of mycobacterium2 tuberculosis cpn10 Phyre2 PDB 2pgc chain A domain 1 Region: 62 - 93 Aligned: 25 Modelled: 32 Confidence: 11.5% Identity: 56% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Marine metagenome family DABB3 Phyre2 1 c2qzaA_ 2 c3nb2B_ 3 d1qcsa2 4 d1vmja_ 5 c1ve0A_ 6 d1vpha_ 7 c2w8dB_ 8 c3ik5A_ 9 d1s4ka_ 10 c2p6cB_ 11 d2py5a1 12 c2jynA_ 13 c2xi1A_ 14 d1efnb_ 15 c3rbbA_ 16 d2nefa_ 17 c3ebcA_ 18 d1bf4a_ 19 c1p82A_ 20 d2pgca1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qzaA_ 95.3 27 PDB header:ligase Chain: A: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of salmonella effector protein sopa 2 c3nb2B_ 94.6 31 PDB header:ligase Chain: B: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel 3 d1qcsa2 24.9 21 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 4 d1vmja_ 19.3 24 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 5 c1ve0A_ 18.3 29 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein (st2072); PDBTitle: crystal structure of uncharacterized protein st2072 from sulfolobus2 tokodaii 6 d1vpha_ 18.0 24 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 7 c2w8dB_ 17.4 17 PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis 8 c3ik5A_ 16.9 33 PDB header:viral protein/signaling protein Chain: A: PDB Molecule:protein nef; PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide2 (a63-r80) 9 d1s4ka_ 16.6 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:YdiL-like 10 c2p6cB_ 15.9 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5. 11 d2py5a1 14.9 33 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 12 c2jynA_ 14.2 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0368 protein ypl225w; PDBTitle: a novel solution nmr structure of protein yst0336 from2 saccharomyces cerevisiae. northeast structural genomics3 consortium target yt51/ontario centre for structural4 proteomics target yst0336 13 c2xi1A_ 14.2 39 PDB header:viral protein Chain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample 14 d1efnb_ 13.4 33 Fold:Regulatory factor Nef Superfamily:Regulatory factor Nef Family:Regulatory factor Nef 15 c3rbbA_ 12.4 39 PDB header:viral protein, protein binding Chain: A: PDB Molecule:protein nef; PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain 16 d2nefa_ 12.1 33 Fold:Regulatory factor Nef Superfamily:Regulatory factor Nef Family:Regulatory factor Nef 17 c3ebcA_ 11.9 62 PDB header:hydrolase/dna Chain: A: PDB Molecule:type-2 restriction enzyme hincii; PDBTitle: structure of n141a hincii with cognate dna 18 d1bf4a_ 11.8 42 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 19 c1p82A_ 11.6 62 PDB header:chaperone Chain: A: PDB Molecule:10 kda chaperonin; PDBTitle: nmr structure of 1-25 fragment of mycobacterium2 tuberculosis cpn10 20 d2pgca1 11.5 56 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Marine metagenome family DABB3 21 d1tx3a1 not modelled 11.3 62 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease HincII 22 d1vj0a1 not modelled 10.9 20 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 23 c2xrhA_ not modelled 10.8 32 PDB header:unknown function Chain: A: PDB Molecule:protein hp0721; PDBTitle: crystal structure of the truncated form of hp0721 24 c2elpA_ not modelled 9.0 55 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 25 d1alqa_ not modelled 8.9 22 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 26 d1ug7a_ not modelled 8.6 20 Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein 27 c2qyxB_ not modelled 8.3 31 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein mj0159; PDBTitle: crystal structure of uncharacterized protein mj0159 from2 methanocaldococcus jannaschii 28 c2jvfA_ not modelled 8.1 32 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 29 c1qysA_ not modelled 7.9 29 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 30 c2ejsA_ not modelled 7.9 17 PDB header:ligase Chain: A: PDB Molecule:autocrine motility factor receptor, isoform 2; PDBTitle: solution structure of ruh-076, a human cue domain 31 d1y14a_ not modelled 7.8 12 Fold:SAM domain-like Superfamily:HRDC-like Family:RNA polymerase II subunit RBP4 (RpoF) 32 c2r8rB_ not modelled 7.7 26 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 33 c3lgeG_ not modelled 7.3 47 PDB header:lyase/protein binding Chain: G: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex 34 c3lgeF_ not modelled 7.3 47 PDB header:lyase/protein binding Chain: F: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex 35 c3h0gP_ not modelled 6.9 21 PDB header:transcription Chain: P: PDB Molecule:dna-directed rna polymerase ii subunit rpb4; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 36 c3l76B_ not modelled 6.7 42 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 37 c1qdnA_ not modelled 6.6 21 PDB header:fusion protein Chain: A: PDB Molecule:protein (n-ethylmaleimide sensitive fusion PDBTitle: amino terminal domain of the n-ethylmaleimide sensitive2 fusion protein (nsf) 38 c2klqA_ not modelled 6.5 29 PDB header:replication Chain: A: PDB Molecule:dna replication licensing factor mcm6; PDBTitle: the solution structure of cbd of human mcm6 39 d1vmfa_ not modelled 6.1 23 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 40 d2qrdb1 not modelled 6.0 44 Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like 41 d1p2fa1 not modelled 5.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 42 c3fo8D_ not modelled 5.9 43 PDB header:viral protein Chain: D: PDB Molecule:tail sheath protein gp18; PDBTitle: crystal structure of the bacteriophage t4 tail sheath2 protein, protease resistant fragment gp18pr 43 c2ex3I_ not modelled 5.9 33 PDB header:transferase/replication Chain: I: PDB Molecule:dna polymerase; PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein 44 c2wzpR_ not modelled 5.8 28 PDB header:viral protein Chain: R: PDB Molecule:lactococcal phage p2 orf16; PDBTitle: structures of lactococcal phage p2 baseplate shed light on2 a novel mechanism of host attachment and activation in3 siphoviridae 45 c3gpkA_ not modelled 5.8 12 PDB header:isomerase Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution. 46 c2k0mA_ not modelled 5.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43 47 d1gado1 not modelled 5.6 58 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 48 d1ggaa1 not modelled 5.6 58 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 49 d2qlvb2 not modelled 5.5 44 Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like 50 d2nn4a1 not modelled 5.4 37 Fold:YqgQ-like Superfamily:YqgQ-like Family:YqgQ-like 51 c3jszA_ not modelled 5.4 35 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: legionella pneumophila glucosyltransferase lgt1 n293a with udp-glc 52 d2v8qb1 not modelled 5.3 44 Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like 53 c2qdjA_ not modelled 5.2 11 PDB header:antitumor protein Chain: A: PDB Molecule:retinoblastoma-associated protein; PDBTitle: crystal structure of the retinoblastoma protein n-domain2 provides insight into tumor suppression, ligand3 interaction and holoprotein architecture 54 c2cp8A_ not modelled 5.2 31 PDB header:protein binding Chain: A: PDB Molecule:next to brca1 gene 1 protein; PDBTitle: solution structure of the rsgi ruh-046, a uba domain from2 human next to brca1 gene 1 protein (kiaa0049 protein)3 r923h variant 55 c2cu5C_ not modelled 5.2 27 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved hypothetical protein tt1486; PDBTitle: crystal structure of the conserved hypothetical protein tt1486 from2 thermus thermophilus hb8 56 c1zk6A_ not modelled 5.1 38 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: nmr solution structure of b. subtilis prsa ppiase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0