Email l.a.kelley@imperial.ac.uk Description P13959 Date Thu Jan 5 11:33:47 GMT 2012 Unique Job ID f22d3e99436105da

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kelB_ 78.8 25 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 2 c2k29A_ 71.4 20 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 3 d1rioa_ 65.0 34 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 4 c2kebA_ 62.1 24 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 5 c3op9A_ 51.6 37 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 6 d1r69a_ 45.3 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 7 c3f6wE_ 44.9 33 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 8 d1y9qa1 43.6 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain 9 d1b0na2 43.1 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 10 c2xcjB_ 42.9 8 PDB header:viral protein Chain: B: PDB Molecule:c protein; PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2 11 d1sq8a_ 39.9 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 12 c3cecA_ 39.7 24 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 13 c2hydB_ 39.6 35 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 14 c3bs3A_ 38.3 19 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 15 c2yl4A_ 37.8 35 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 16 c3b7hA_ 37.0 17 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 17 c2yyzA_ 36.9 25 PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein 18 d1lmb3_ 36.9 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 19 d1adra_ 35.9 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 20 c3fmyA_ 35.2 14 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 21 c2kpjA_ not modelled 34.7 15 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 22 c2ewtA_ not modelled 34.4 21 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd 23 d1y7ya1 not modelled 34.3 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 24 c3t76A_ not modelled 34.0 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 25 d1h1js_ not modelled 33.6 13 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 26 c3b5xB_ not modelled 33.6 35 PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae 27 d2hzab1 not modelled 33.3 16 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 28 c3b5wE_ not modelled 31.8 35 PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba 29 c2ef8A_ not modelled 30.7 27 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcription factor; PDBTitle: crystal structure of c.ecot38is 30 c3omtA_ not modelled 29.9 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 31 c2kslA_ not modelled 27.8 42 PDB header:toxin Chain: A: PDB Molecule:u1-agatoxin-ta1a; PDBTitle: structure of the insecticidal toxin taitx-1 32 c3kk4B_ not modelled 27.6 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bp1543; PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i 33 c3h8kB_ not modelled 26.1 40 PDB header:ligase Chain: B: PDB Molecule:autocrine motility factor receptor, isoform 2; PDBTitle: crystal structure of ube2g2 complxed with the g2br domain of2 gp78 at 1.8-a resolution 34 d2b5aa1 not modelled 25.7 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 35 c3lisB_ not modelled 24.5 24 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 36 d2bj7a1 not modelled 23.7 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 37 c1y9qA_ not modelled 23.6 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 38 d2hzaa1 not modelled 22.9 18 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 39 d2croa_ not modelled 21.6 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 40 c2k5jB_ not modelled 20.6 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 41 c3dnvB_ not modelled 19.9 22 PDB header:transcription/dna Chain: B: PDB Molecule:hth-type transcriptional regulator hipb; PDBTitle: mdt protein 42 d1ehia2 not modelled 19.9 25 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 43 d1x57a1 not modelled 19.7 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:EDF1-like 44 c1kcfB_ not modelled 19.6 15 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2 45 d1jj7a_ not modelled 19.3 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 46 c1q5vB_ not modelled 19.0 18 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 47 c1oxtB_ not modelled 18.1 19 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus 48 c3eusB_ not modelled 18.0 39 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding protein; PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi 49 c2fjrB_ not modelled 17.6 18 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 50 c2ca9B_ not modelled 17.5 21 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 51 c3trbA_ not modelled 17.4 29 PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii 52 c2uwjG_ not modelled 17.1 36 PDB header:chaperone Chain: G: PDB Molecule:type iii export protein pscg; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 53 c2ebyA_ not modelled 16.7 21 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli 54 c2it1B_ not modelled 15.8 23 PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii 55 d1g2912 not modelled 15.6 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 56 c2kvuA_ not modelled 15.3 13 PDB header:transcription regulator Chain: A: PDB Molecule:mkl/myocardin-like protein 1; PDBTitle: solution nmr structure of sap domain of mkl/myocardin-like2 protein 1 from h.sapiens, northeast structural genomics3 consortium target target hr4547e 57 d2a6ca1 not modelled 14.9 32 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 58 d1utxa_ not modelled 14.8 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 59 c3fvqB_ not modelled 14.7 19 PDB header:hydrolase Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc; PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp 60 c3clcC_ not modelled 14.7 18 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 61 d1e4ea2 not modelled 14.3 24 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 62 c1s16B_ not modelled 13.8 15 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of e. coli topoisomerase iv pare 43kda subunit2 complexed with adpnp 63 c3mlfC_ not modelled 13.6 23 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus. 64 c1z47B_ not modelled 13.6 25 PDB header:ligand binding protein Chain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius 65 c3bdnB_ not modelled 13.2 29 PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor 66 d1llib_ not modelled 13.0 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 67 c2d62A_ not modelled 12.6 21 PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein 68 c3ivpD_ not modelled 12.5 18 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 69 c2o38A_ not modelled 12.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 70 d2o38a1 not modelled 12.1 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 71 d2r1jl1 not modelled 11.9 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 72 c3g5uB_ not modelled 11.7 35 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 73 c1b0nA_ not modelled 11.7 22 PDB header:transcription regulator Chain: A: PDB Molecule:protein (sinr protein); PDBTitle: sinr protein/sini protein complex 74 c3f52A_ not modelled 11.4 22 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 75 c2bj3D_ not modelled 11.1 21 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 76 c3kxaD_ not modelled 10.9 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae 77 c1vciA_ not modelled 10.9 19 PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp 78 d1wgna_ not modelled 10.6 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 79 d2icta1 not modelled 9.9 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 80 c1e4eB_ not modelled 9.8 23 PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase 81 c3tqtB_ not modelled 9.5 22 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 82 c3i12A_ not modelled 9.5 26 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 83 c3adjA_ not modelled 9.3 22 PDB header:gene regulation Chain: A: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 84 c2i80B_ not modelled 9.2 26 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies 85 c3gm8A_ not modelled 8.2 18 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus 86 c2w62A_ not modelled 8.1 16 PDB header:transferase Chain: A: PDB Molecule:glycolipid-anchored surface protein 2; PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose 87 d1u5ta2 not modelled 8.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 88 c3se7A_ not modelled 8.1 16 PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana 89 c1wwuA_ not modelled 7.8 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21935; PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935 90 d1tc3c_ not modelled 7.7 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 91 d3d31a2 not modelled 7.7 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 92 d1ayea2 not modelled 7.4 10 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 93 c2krfB_ not modelled 6.9 13 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a 94 d1pcaa1 not modelled 6.9 7 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 95 d1pf4a1 not modelled 6.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 96 d1rfza_ not modelled 6.7 23 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 97 d1v43a3 not modelled 6.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 98 c2k9iB_ not modelled 6.5 28 PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus 99 c2pzfB_ not modelled 6.4 33 PDB header:hydrolase Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator; PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508