Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	F	K	P	L	V	T	A	G	I	E	S	L	L	N	T	F	L	Y	R	S	P	A	L	K	T	A	R	S	R	L	L	G	K	V	L	R	V	E	V	K	G	F	S	T	S	L	I	L	V	F	S	E	R	Q	V	D	V	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	W	A	G	D	A	D	C	T	V	I	A	Y	A	S	V	L	P	K	L	R	D	R	Q	Q	L	T	A	L	I	R	S	G	E	L	E	V	Q	G	D	I	Q	V	V	Q	N	F	V	A	L	A	D	L	A	E	F	D	P	A
Secondary structure
SS confidence
Disorder																							?				?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	L	L	A	P	Y	T	G	D	I	A	A	E	G	I	S	K	A	M	R	G	G	A	K	F	L	H	H	G	I	K	R	Q	Q	R	Y	V	A	E	A	I	T	E	E	W	R	M	A	P	G	P	L	E	V	A	W	F	A	E	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Sequence		T	A	A	V	E	R	A	V	D	A	L	T	K	R	L	E	K	L	E	A	K
Secondary structure
SS confidence
Disorder																					?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ikt chain A Region: 8 - 115 Aligned: 104 Modelled: 108 Confidence: 98.8% Identity: 15% Fold: SCP-like Superfamily: SCP-like Family: Sterol carrier protein, SCP Phyre2 PDB 3bn8 chain A Region: 11 - 115 Aligned: 103 Modelled: 105 Confidence: 98.8% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:putative sterol carrier protein 2; PDBTitle: crystal structure of a putative sterol carrier protein type 2 (af1534)2 from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution Phyre2 PDB 3bdq chain B Region: 4 - 112 Aligned: 109 Modelled: 109 Confidence: 98.8% Identity: 16% PDB header:lipid transport Chain: B: PDB Molecule:sterol carrier protein 2-like 2; PDBTitle: room tempreture crystal structure of sterol carrier protein-2 2 like-2 Phyre2 PDB 1c44 chain A Region: 12 - 112 Aligned: 101 Modelled: 101 Confidence: 98.6% Identity: 16% Fold: SCP-like Superfamily: SCP-like Family: Sterol carrier protein, SCP Phyre2 PDB 1pz4 chain A Region: 34 - 116 Aligned: 83 Modelled: 83 Confidence: 98.4% Identity: 10% Fold: SCP-like Superfamily: SCP-like Family: Sterol carrier protein, SCP Phyre2 PDB 2cfu chain A domain 1 Region: 36 - 119 Aligned: 84 Modelled: 84 Confidence: 98.4% Identity: 15% Fold: SCP-like Superfamily: SCP-like Family: Alkylsulfatase C-terminal domain-like Phyre2 PDB 3bkr chain A Region: 33 - 114 Aligned: 82 Modelled: 82 Confidence: 98.2% Identity: 18% PDB header:lipid binding protein Chain: A: PDB Molecule:sterol carrier protein-2 like-3; PDBTitle: crystal structure of sterol carrier protein-2 like-3 (scp2-2 l3) from aedes aegypti Phyre2 PDB 1wfr chain A Region: 2 - 115 Aligned: 109 Modelled: 114 Confidence: 97.9% Identity: 19% Fold: SCP-like Superfamily: SCP-like Family: Sterol carrier protein, SCP Phyre2 PDB 2cfu chain A Region: 36 - 119 Aligned: 84 Modelled: 84 Confidence: 97.1% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. Phyre2 PDB 2i00 chain A domain 1 Region: 33 - 112 Aligned: 76 Modelled: 80 Confidence: 92.7% Identity: 13% Fold: SCP-like Superfamily: SCP-like Family: EF1021 C-terminal domain-like Phyre2 PDB 2hv2 chain A domain 1 Region: 36 - 112 Aligned: 73 Modelled: 77 Confidence: 91.2% Identity: 16% Fold: SCP-like Superfamily: SCP-like Family: EF1021 C-terminal domain-like Phyre2 PDB 2i00 chain D Region: 31 - 112 Aligned: 78 Modelled: 82 Confidence: 86.3% Identity: 13% PDB header:transferase Chain: D: PDB Molecule:acetyltransferase, gnat family; PDBTitle: crystal structure of acetyltransferase (gnat family) from enterococcus2 faecalis Phyre2 PDB 2wuk chain D Region: 170 - 201 Aligned: 32 Modelled: 32 Confidence: 66.9% Identity: 22% PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant Phyre2 PDB 2ozg chain A domain 1 Region: 35 - 112 Aligned: 72 Modelled: 78 Confidence: 61.2% Identity: 18% Fold: SCP-like Superfamily: SCP-like Family: EF1021 C-terminal domain-like Phyre2 PDB 1aq5 chain C Region: 179 - 201 Aligned: 23 Modelled: 23 Confidence: 58.4% Identity: 35% PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures Phyre2 PDB 1m1j chain A Region: 132 - 199 Aligned: 68 Modelled: 68 Confidence: 56.1% Identity: 15% PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands Phyre2 PDB 2hv2 chain D Region: 36 - 112 Aligned: 71 Modelled: 77 Confidence: 56.0% Identity: 17% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of conserved protein of unknown function from2 enterococcus faecalis v583 at 2.4 a resolution, probable n-3 acyltransferase Phyre2 PDB 2xdj chain F Region: 171 - 201 Aligned: 31 Modelled: 31 Confidence: 54.5% Identity: 3% PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf Phyre2 PDB 1t3j chain A Region: 174 - 200 Aligned: 27 Modelled: 27 Confidence: 51.2% Identity: 22% PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant Phyre2 PDB 1go4 chain F Region: 166 - 199 Aligned: 34 Modelled: 34 Confidence: 46.3% Identity: 15% PDB header:cell cycle Chain: F: PDB Molecule:mad1 (mitotic arrest deficient)-like 1; PDBTitle: crystal structure of mad1-mad2 reveals a conserved mad22 binding motif in mad1 and cdc20. Phyre2 1 d1ikta_ 2 c3bn8A_ 3 c3bdqB_ 4 d1c44a_ 5 d1pz4a_ 6 d2cfua1 7 c3bkrA_ 8 d1wfra_ 9 c2cfuA_ 10 d2i00a1 11 d2hv2a1 12 c2i00D_ 13 c2wukD_ 14 d2ozga1 15 c1aq5C_ 16 c1m1jA_ 17 c2hv2D_ 18 c2xdjF_ 19 c1t3jA_ 20 c1go4F_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ikta_ 98.8 15 Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP 2 c3bn8A_ 98.8 12 PDB header:transport protein Chain: A: PDB Molecule:putative sterol carrier protein 2; PDBTitle: crystal structure of a putative sterol carrier protein type 2 (af1534)2 from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution 3 c3bdqB_ 98.8 16 PDB header:lipid transport Chain: B: PDB Molecule:sterol carrier protein 2-like 2; PDBTitle: room tempreture crystal structure of sterol carrier protein-2 2 like-2 4 d1c44a_ 98.6 16 Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP 5 d1pz4a_ 98.4 10 Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP 6 d2cfua1 98.4 15 Fold:SCP-like Superfamily:SCP-like Family:Alkylsulfatase C-terminal domain-like 7 c3bkrA_ 98.2 18 PDB header:lipid binding protein Chain: A: PDB Molecule:sterol carrier protein-2 like-3; PDBTitle: crystal structure of sterol carrier protein-2 like-3 (scp2-2 l3) from aedes aegypti 8 d1wfra_ 97.9 19 Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP 9 c2cfuA_ 97.1 15 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 10 d2i00a1 92.7 13 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 11 d2hv2a1 91.2 16 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 12 c2i00D_ 86.3 13 PDB header:transferase Chain: D: PDB Molecule:acetyltransferase, gnat family; PDBTitle: crystal structure of acetyltransferase (gnat family) from enterococcus2 faecalis 13 c2wukD_ 66.9 22 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 14 d2ozga1 61.2 18 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 15 c1aq5C_ 58.4 35 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 16 c1m1jA_ 56.1 15 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 17 c2hv2D_ 56.0 17 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of conserved protein of unknown function from2 enterococcus faecalis v583 at 2.4 a resolution, probable n-3 acyltransferase 18 c2xdjF_ 54.5 3 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 19 c1t3jA_ 51.2 22 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 20 c1go4F_ 46.3 15 PDB header:cell cycle Chain: F: PDB Molecule:mad1 (mitotic arrest deficient)-like 1; PDBTitle: crystal structure of mad1-mad2 reveals a conserved mad22 binding motif in mad1 and cdc20. 21 c1dipA_ not modelled 43.4 24 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 22 c2pnvA_ not modelled 42.7 20 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 23 c2yy0D_ not modelled 38.9 27 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 24 c1m7lA_ not modelled 35.7 29 PDB header:sugar binding protein Chain: A: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d 25 c3n7zD_ not modelled 34.3 8 PDB header:transferase Chain: D: PDB Molecule:acetyltransferase, gnat family; PDBTitle: crystal structure of acetyltransferase from bacillus anthracis 26 c2akfC_ not modelled 34.0 29 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 27 c2akfA_ not modelled 34.0 29 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 28 c2akfB_ not modelled 34.0 29 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 29 c3iqtA_ not modelled 29.8 10 PDB header:transferase Chain: A: PDB Molecule:signal transduction histidine-protein kinase bara; PDBTitle: structure of the hpt domain of sensor protein bara from escherichia2 coli cft073. 30 c1coiA_ not modelled 25.3 43 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 31 c3rylB_ not modelled 25.2 13 PDB header:protein binding Chain: B: PDB Molecule:protein vpa1370; PDBTitle: dimerization domain of vibrio parahemolyticus vopl 32 c2ozgA_ not modelled 24.0 18 PDB header:transferase Chain: A: PDB Molecule:gcn5-related n-acetyltransferase; PDBTitle: crystal structure of gcn5-related n-acetyltransferase (yp_325469.1)2 from anabaena variabilis atcc 29413 at 2.00 a resolution 33 c3qh9A_ not modelled 24.0 20 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 34 d1rf8b_ not modelled 23.1 13 Fold:Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain Superfamily:Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain Family:Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain 35 c3ghgD_ not modelled 21.7 9 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 36 c1lq0A_ not modelled 19.0 10 PDB header:hydrolase Chain: A: PDB Molecule:chitotriosidase; PDBTitle: crystal structure of human chitotriosidase at 2.2 angstrom2 resolution 37 c3gw6F_ not modelled 18.2 31 PDB header:chaperone Chain: F: PDB Molecule:endo-n-acetylneuraminidase; PDBTitle: intramolecular chaperone 38 d1wb0a1 not modelled 15.0 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 39 c3r1kA_ not modelled 15.0 17 PDB header:transferase Chain: A: PDB Molecule:enhanced intracellular survival protein; PDBTitle: crystal structure of acetyltransferase eis from mycobacterium2 tuberculosis h37rv in complex with coa and an acetamide moiety 40 c1ci6B_ not modelled 14.9 13 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 41 c3ojaB_ not modelled 14.6 10 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 42 c3p8cD_ not modelled 14.5 19 PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex 43 c1hf9B_ not modelled 13.8 17 PDB header:atpase inhibitor Chain: B: PDB Molecule:atpase inhibitor (mitochondrial); PDBTitle: c-terminal coiled-coil domain from bovine if1 44 c1gk7A_ not modelled 13.6 24 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a) 45 c1kddC_ not modelled 13.3 25 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 46 c1kddF_ not modelled 13.0 25 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 47 c1kddA_ not modelled 13.0 25 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 48 c2o1mB_ not modelled 12.8 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 49 c3ctwB_ not modelled 12.7 14 PDB header:protein binding Chain: B: PDB Molecule:rcda; PDBTitle: crystal structure of rcda from caulobacter crescentus cb15 50 d1bgfa_ not modelled 12.6 7 Fold:Transcription factor STAT-4 N-domain Superfamily:Transcription factor STAT-4 N-domain Family:Transcription factor STAT-4 N-domain 51 c1u0iA_ not modelled 12.6 43 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 52 c1wb0A_ not modelled 12.5 10 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:chitotriosidase 1; PDBTitle: specificity and affinity of natural product cyclopentapeptide2 inhibitor argifin against human chitinase 53 c3he4A_ not modelled 11.6 30 PDB header:de novo protein Chain: A: PDB Molecule:synzip6; PDBTitle: heterospecific coiled-coil pair synzip5:synzip6 54 d1rp3a2 not modelled 11.2 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 55 d1sxje1 not modelled 11.1 14 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 56 c3fxyA_ not modelled 10.4 8 PDB header:hydrolase Chain: A: PDB Molecule:acidic mammalian chitinase; PDBTitle: acidic mammalian chinase, catalytic domain 57 c2dt7A_ not modelled 10.1 26 PDB header:rna binding protein Chain: A: PDB Molecule:splicing factor 3a subunit 3; PDBTitle: solution structure of the second surp domain of human2 splicing factor sf3a120 in complex with a fragment of3 human splicing factor sf3a60 58 d1vf8a1 not modelled 9.6 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 59 d1kfta_ not modelled 9.5 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 60 c1kftA_ not modelled 9.5 19 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 61 c3iynR_ not modelled 9.2 14 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 62 c1kd9C_ not modelled 8.2 25 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 63 c1kd9A_ not modelled 8.2 25 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 64 c1kd9F_ not modelled 8.2 25 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l 65 d1ivsa1 not modelled 7.9 19 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 66 d1st6a3 not modelled 7.8 16 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 67 c3myfB_ not modelled 7.7 9 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the hpt domain from the hpt sensor hybrid2 histidine kinase from shewanella to 1.80a 68 c2l5gB_ not modelled 7.1 19 PDB header:transcription regulator Chain: B: PDB Molecule:putative uncharacterized protein ncor2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 69 c3t97B_ not modelled 6.8 6 PDB header:protein transport Chain: B: PDB Molecule:nuclear pore complex protein nup54; PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup62/nup54 70 c2lgxA_ not modelled 6.5 20 PDB header:cell adhesion Chain: A: PDB Molecule:fermitin family homolog 2; PDBTitle: nmr structure for kindle-2 n-terminus 71 c1jekA_ not modelled 6.5 15 PDB header:viral protein Chain: A: PDB Molecule:env polyprotein; PDBTitle: visna tm core structure 72 c1kd8F_ not modelled 6.4 29 PDB header:de novo protein Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 73 c1kd8A_ not modelled 6.4 29 PDB header:de novo protein Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 74 c1kd8C_ not modelled 6.4 29 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12ia16v; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 75 c3a7pB_ not modelled 6.3 8 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 76 c3hugA_ not modelled 5.9 6 PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 77 c3ljmB_ not modelled 5.5 41 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 78 c2jgoC_ not modelled 5.5 41 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 79 c1cosB_ not modelled 5.4 41 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 80 c1e9lA_ not modelled 5.3 10 PDB header:macrophage secretory protein Chain: A: PDB Molecule:ym1 secretory protein; PDBTitle: the crystal structure of novel mammalian lectin ym12 suggests a saccharide binding site 81 c2jgoB_ not modelled 5.3 39 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 82 c3ljmC_ not modelled 5.3 39 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 83 c3ljmA_ not modelled 5.3 39 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 84 c2jgoA_ not modelled 5.3 39 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 85 c1u2uA_ not modelled 5.3 32 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 86 d1ii5a_ not modelled 5.2 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 87 c1cosA_ not modelled 5.2 39 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 88 c1cosC_ not modelled 5.2 39 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 89 d1u00a1 not modelled 5.2 11 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain Family:Heat shock protein 70kD (HSP70), C-terminal subdomain 90 c2xzrA_ not modelled 5.1 8 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 91 d2hvma_ not modelled 5.1 32 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0