PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1ii5a_

Fold library id	Fold	Superfamily	Family
d1ii5a_	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like

Links to external resources
Added to library: Tue Mar 16 13:15:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S A M A L K V G V V G N P P F V F Y G A F T G I S L D V W R A V A E S Q K W N S E Y V R Q N S I S A G I T A V A E G E L D I L I G P I S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
S T
S
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T P E R A A I E G I T F T Q P Y F S S G I G L L I P G T A T P L F R S V G D L K N K E V A V V R D T T A V D W A N F Y Q A D V R E T N N L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T
G G G T T T
S S G G G G T T
T T S T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A I T L L Q K K Q V E A V M F D R P A L I Y Y T R Q N P N L N L E V T E I R V S L E P Y G F V L K E N S P L Q K T I N V E M L N L L Y S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
G G G
S
S T T
T T T T

. . . . . . . . . 220 . .

Sequence V I A E F T E R W L G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	A	M	A	L	K	V	G	V	V	G	N	P	P	F	V	F	Y	G	A	F	T	G	I	S	L	D	V	W	R	A	V	A	E	S	Q	K	W	N	S	E	Y	V	R	Q	N	S	I	S	A	G	I	T	A	V	A	E	G	E	L	D	I	L	I	G	P	I	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S											T	T	T								S														T									S											T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	P	E	R	A	A	I	E	G	I	T	F	T	Q	P	Y	F	S	S	G	I	G	L	L	I	P	G	T	A	T	P	L	F	R	S	V	G	D	L	K	N	K	E	V	A	V	V	R	D	T	T	A	V	D	W	A	N	F	Y	Q	A	D	V	R	E	T	N	N	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	S	T	T																		G	G	G	T	T	T		S	S	G	G	G	G	T	T							T	T	S									T	T							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	I	T	L	L	Q	K	K	Q	V	E	A	V	M	F	D	R	P	A	L	I	Y	Y	T	R	Q	N	P	N	L	N	L	E	V	T	E	I	R	V	S	L	E	P	Y	G	F	V	L	K	E	N	S	P	L	Q	K	T	I	N	V	E	M	L	N	L	L	Y	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S		S																	G	G	G						S			S											T	T		T	T														T	T
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	V	I	A	E	F	T	E	R	W	L	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)