Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	T	P	L	T	A	F	A	G	V	R	L	R	W	P	A	M	M	R	L	T	C	I	G	I	L	A	Q	F	A	L	L	L	L	A	F	G	V	L	T	Y	C	F	L	I	S	D	F	S	V	I	Y	V	A	Q	H	S	Y	S
Secondary structure
SS confidence
Disorder		?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	S	W	E	L	K	L	A	A	V	W	G	G	H	E	G	S	L	L	L	W	V	L	L	L	S	A	W	S	A	L	F	A	W	H	Y	R	Q	Q	T	D	P	L	F	P	L	T	L	A	V	L	S	L	M	L	A	A	L	L
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	F	V	V	L	W	S	D	P	F	V	R	I	F	P	P	A	I	E	G	R	D	L	N	P	M	L	Q	H	P	G	L	I	F	H	P	P	L	L	Y	L	G	Y	G	G	L	M	V	A	A	S	V	A	L	A	S	L	L	R	G
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	F	D	G	A	C	A	R	I	C	W	R	W	A	L	P	G	W	S	A	L	T	A	G	I	I	L	G	S	W	W	A	Y	C	E	L	G	W	G	G	W	W	F	W	D	P	V	E	N	A	S	L	L	P	W	L	S	A	T	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	L	H	S	L	S	L	T	R	Q	R	G	I	F	C	H	W	S	L	L	L	A	I	V	T	L	M	L	S	L	L	G	T	L	I	V	R	S	G	I	L	V	S	V	H	A	F	A	L	D	N	V	R	A	V	P	L	F	S	L
Secondary structure
SS confidence
Disorder								?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	A	L	I	S	L	A	S	L	A	L	Y	G	W	R	A	R	D	G	G	P	A	V	H	F	S	G	L	S	R	E	M	L	I	L	A	T	L	L	L	F	C	A	V	L	L	I	V	L	V	G	T	L	Y	P	M	I	Y	G	L
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	G	W	G	R	L	S	V	G	A	P	Y	F	N	R	A	T	L	P	F	G	L	L	M	L	V	V	I	V	L	A	T	F	V	S	G	K	R	V	Q	L	P	A	L	V	A	H	A	G	V	L	L	F	A	A	G	V	V	V	S
Secondary structure
SS confidence
Disorder			?	?	?	?			?																											?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		S	V	S	R	Q	E	I	S	L	N	L	Q	P	G	Q	Q	V	T	L	A	G	Y	T	F	R	F	E	C	L	D	L	Q	A	K	G	N	Y	T	S	E	K	A	I	V	A	L	F	D	H	Q	Q	R	I	G	E	L	T	P	E	R
Secondary structure
SS confidence
Disorder							?	?								?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		R	F	Y	E	A	R	R	Q	Q	M	M	E	P	S	I	R	W	N	G	I	H	D	W	Y	A	V	M	G	E	K	T	G	P	D	R	Y	A	F	R	L	Y	V	Q	S	G	V	R	W	I	W	G	G	G	L	L	M	I	A	G	A
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.
Sequence		L	L	S	G	W	R	G	K	K	R	D	E
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3cfu chain A Region: 432 - 528 Aligned: 96 Modelled: 97 Confidence: 88.8% Identity: 10% PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 Phyre2 PDB 2aff chain A domain 1 Region: 424 - 448 Aligned: 25 Modelled: 25 Confidence: 51.8% Identity: 24% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 3lkx chain B Region: 447 - 514 Aligned: 48 Modelled: 54 Confidence: 47.7% Identity: 23% PDB header:chaperone Chain: B: PDB Molecule:nascent polypeptide-associated complex subunit alpha; PDBTitle: human nac dimerization domain Phyre2 PDB 1r21 chain A Region: 424 - 448 Aligned: 25 Modelled: 25 Confidence: 45.4% Identity: 24% PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain Phyre2 PDB 2lez chain A Region: 438 - 482 Aligned: 41 Modelled: 45 Confidence: 34.5% Identity: 17% PDB header:signaling protein Chain: A: PDB Molecule:secreted effector protein pipb2; PDBTitle: solution nmr structure of n-terminal domain of salmonella effector2 protein pipb2. northeast structural genomics consortium (nesg) target3 stt318a Phyre2 PDB 1udx chain A domain 3 Region: 432 - 448 Aligned: 17 Modelled: 17 Confidence: 31.4% Identity: 24% Fold: Obg GTP-binding protein C-terminal domain Superfamily: Obg GTP-binding protein C-terminal domain Family: Obg GTP-binding protein C-terminal domain Phyre2 PDB 1agq chain B Region: 214 - 228 Aligned: 12 Modelled: 15 Confidence: 27.2% Identity: 42% PDB header:growth factor Chain: B: PDB Molecule:glial cell-derived neurotrophic factor; PDBTitle: glial cell-derived neurotrophic factor from rat Phyre2 PDB 2ff4 chain A domain 3 Region: 424 - 447 Aligned: 24 Modelled: 24 Confidence: 26.0% Identity: 21% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 3gqs chain B Region: 424 - 449 Aligned: 26 Modelled: 26 Confidence: 17.3% Identity: 23% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis Phyre2 PDB 3b55 chain A domain 1 Region: 222 - 236 Aligned: 15 Modelled: 15 Confidence: 15.8% Identity: 27% Fold: EreA/ChaN-like Superfamily: EreA/ChaN-like Family: EreA-like Phyre2 PDB 2rad chain B Region: 222 - 236 Aligned: 15 Modelled: 15 Confidence: 15.4% Identity: 27% PDB header:biosynthetic protein Chain: B: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135 Phyre2 PDB 2zpm chain A Region: 431 - 475 Aligned: 43 Modelled: 45 Confidence: 13.3% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b Phyre2 PDB 2f69 chain A domain 1 Region: 420 - 483 Aligned: 56 Modelled: 56 Confidence: 13.2% Identity: 16% Fold: open-sided beta-meander Superfamily: Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Family: Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Phyre2 PDB 1fft chain B domain 2 Region: 295 - 353 Aligned: 59 Modelled: 59 Confidence: 13.1% Identity: 12% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 3uot chain B Region: 427 - 450 Aligned: 24 Modelled: 24 Confidence: 12.9% Identity: 21% PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus Phyre2 PDB 2l9u chain A Region: 534 - 549 Aligned: 16 Modelled: 16 Confidence: 12.4% Identity: 31% PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain Phyre2 PDB 1c8n chain A Region: 69 - 81 Aligned: 13 Modelled: 13 Confidence: 12.2% Identity: 23% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: Positive stranded ssRNA viruses Family: Tombusviridae-like VP Phyre2 PDB 1lcy chain A Region: 431 - 481 Aligned: 49 Modelled: 51 Confidence: 12.2% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2 Phyre2 PDB 1dlp chain A domain 1 Region: 417 - 448 Aligned: 32 Modelled: 32 Confidence: 12.2% Identity: 13% Fold: beta-Prism II Superfamily: alpha-D-mannose-specific plant lectins Family: alpha-D-mannose-specific plant lectins Phyre2 PDB 1f2n chain C Region: 69 - 81 Aligned: 13 Modelled: 13 Confidence: 11.9% Identity: 54% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: Positive stranded ssRNA viruses Family: Tombusviridae-like VP Phyre2 1 c3cfuA_ 2 d2affa1 3 c3lkxB_ 4 c1r21A_ 5 c2lezA_ 6 d1udxa3 7 c1agqB_ 8 d2ff4a3 9 c3gqsB_ 10 d3b55a1 11 c2radB_ 12 c2zpmA_ 13 d2f69a1 14 d1fftb2 15 c3uotB_ 16 c2l9uA_ 17 d1c8na_ 18 c1lcyA_ 19 d1dlpa1 20 d1f2nc_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3cfuA_ 88.8 10 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 2 d2affa1 51.8 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 3 c3lkxB_ 47.7 23 PDB header:chaperone Chain: B: PDB Molecule:nascent polypeptide-associated complex subunit alpha; PDBTitle: human nac dimerization domain 4 c1r21A_ 45.4 24 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 5 c2lezA_ 34.5 17 PDB header:signaling protein Chain: A: PDB Molecule:secreted effector protein pipb2; PDBTitle: solution nmr structure of n-terminal domain of salmonella effector2 protein pipb2. northeast structural genomics consortium (nesg) target3 stt318a 6 d1udxa3 31.4 24 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 7 c1agqB_ 27.2 42 PDB header:growth factor Chain: B: PDB Molecule:glial cell-derived neurotrophic factor; PDBTitle: glial cell-derived neurotrophic factor from rat 8 d2ff4a3 26.0 21 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 9 c3gqsB_ 17.3 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 10 d3b55a1 15.8 27 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:EreA-like 11 c2radB_ 15.4 27 PDB header:biosynthetic protein Chain: B: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135 12 c2zpmA_ 13.3 12 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 13 d2f69a1 13.2 16 Fold:open-sided beta-meander Superfamily:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Family:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 14 d1fftb2 13.1 12 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 15 c3uotB_ 12.9 21 PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus 16 c2l9uA_ 12.4 31 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 17 d1c8na_ 12.2 23 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 18 c1lcyA_ 12.2 16 PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2 19 d1dlpa1 12.2 13 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 20 d1f2nc_ 11.9 54 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 21 c2kklA_ not modelled 11.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 22 d4sbva_ not modelled 11.3 31 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 23 d2o3ga1 not modelled 11.2 18 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 24 d1smvc_ not modelled 11.2 31 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 25 c2bbjB_ not modelled 11.2 8 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 26 c3poaA_ not modelled 10.7 14 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 27 c1bhbA_ not modelled 10.6 30 PDB header:photoreceptor Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy 28 d2gmqa1 not modelled 10.4 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:PrgU-like 29 c2r76A_ not modelled 10.3 9 PDB header:lipoprotein Chain: A: PDB Molecule:rare lipoprotein b; PDBTitle: crystal structure of the rare lipoprotein b (so_1173) from shewanella2 oneidensis, northeast structural genomics consortium target sor91a 30 c3mpbA_ not modelled 10.2 17 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 31 c3ia8A_ not modelled 10.1 29 PDB header:metal binding protein Chain: A: PDB Molecule:thap domain-containing protein 4; PDBTitle: the structure of the c-terminal heme nitrobindin domain of thap2 domain-containing protein 4 from homo sapiens 32 d1ng0c_ not modelled 10.0 50 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 33 d1smva_ not modelled 9.6 31 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 34 c4a0kB_ not modelled 9.2 75 PDB header:ligase/dna-binding protein/dna Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rbx1; PDBTitle: structure of ddb1-ddb2-cul4a-rbx1 bound to a 12 bp abasic2 site containing dna-duplex 35 d1f2na_ not modelled 9.2 54 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 36 c1f2nA_ not modelled 9.2 54 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: rice yellow mottle virus 37 d2p13a1 not modelled 9.2 26 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 38 c1hgvA_ not modelled 9.2 26 PDB header:virus Chain: A: PDB Molecule:ph75 inovirus major coat protein; PDBTitle: filamentous bacteriophage ph75 39 d1hdmb2 not modelled 9.2 83 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 40 c2p0vA_ not modelled 9.1 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bt3781; PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58 41 d2p0va1 not modelled 9.1 28 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 42 c3lw52_ not modelled 9.1 18 PDB header:photosynthesis Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from photosystem i; PDB Fragment:residues 81-246; PDBTitle: improved model of plant photosystem i 43 d2vq0a1 not modelled 9.0 31 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 44 c2dfwA_ not modelled 8.8 27 PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3 45 d2nvpa1 not modelled 8.3 39 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 46 d1bwua_ not modelled 8.3 25 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 47 c1c8nC_ not modelled 7.9 23 PDB header:virus Chain: C: PDB Molecule:coat protein; PDBTitle: tobacco necrosis virus 48 d1c8nc_ not modelled 7.9 23 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 49 c3rkoN_ not modelled 7.7 20 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 50 d2qgma1 not modelled 7.7 13 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:EreA-like 51 c2qgmA_ not modelled 7.7 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of succinoglycan biosynthesis protein at2 the resolution 1.7 a. northeast structural genomics3 consortium target bcr136. 52 d2o1ra1 not modelled 7.7 11 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 53 c3o0rB_ not modelled 7.7 14 PDB header:immune system/oxidoreductase Chain: B: PDB Molecule:nitric oxide reductase subunit b; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 54 d1u60a_ not modelled 7.7 29 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Glutaminase 55 c2l7eA_ not modelled 7.6 63 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 14; PDBTitle: the structure of a domain from yeast 56 c2yyoA_ not modelled 7.5 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:spry domain-containing protein 3; PDBTitle: crystal sturcture of human spry domain 57 d2bgca2 not modelled 7.4 80 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:Listeriolysin regulatory protein PrfA, N-terminal domain 58 c1ng0A_ not modelled 7.4 50 PDB header:virus Chain: A: PDB Molecule:coat protein; PDBTitle: the three-dimensional structure of cocksfoot mottle virus2 at 2.7a resolution 59 d1ng0a_ not modelled 7.4 50 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 60 c3mezA_ not modelled 7.2 10 PDB header:sugar binding protein Chain: A: PDB Molecule:mannose-specific lectin 3 chain 1; PDBTitle: x-ray structural analysis of a mannose specific lectin from dutch2 crocus (crocus vernus) 61 c2kjpA_ not modelled 7.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ylbl; PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a 62 c2ksfA_ not modelled 7.2 13 PDB header:transferase Chain: A: PDB Molecule:sensor protein kdpd; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor kdpd, center for structures of3 membrane proteins (csmp) target 4312c 63 d3deda1 not modelled 7.2 16 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 64 c1yj5C_ not modelled 7.1 30 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 65 d1rl2a2 not modelled 7.1 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 66 c3fm8A_ not modelled 7.1 16 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 67 d1gh6b2 not modelled 7.1 7 Fold:Cyclin-like Superfamily:Cyclin-like Family:Retinoblastoma tumor suppressor domains 68 c2yvxD_ not modelled 7.1 21 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 69 c2jkdB_ not modelled 7.1 21 PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex 70 d1bwud_ not modelled 7.0 20 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 71 d2plia1 not modelled 7.0 23 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 72 d2brfa1 not modelled 7.0 28 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 73 d1kj1a_ not modelled 7.0 25 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 74 c3m4wH_ not modelled 7.0 26 PDB header:signaling protein/signaling protein Chain: H: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: structural basis for the negative regulation of bacterial stress2 response by rseb 75 c2vo9C_ not modelled 6.9 25 PDB header:hydrolase Chain: C: PDB Molecule:l-alanyl-d-glutamate peptidase; PDBTitle: crystal structure of the enzymatically active domain of the2 listeria monocytogenes bacteriophage 500 endolysin ply500 76 c3dedB_ not modelled 6.9 16 PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum 77 c3elsA_ not modelled 6.9 23 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 78 c1gh6B_ not modelled 6.9 13 PDB header:antitumor protein Chain: B: PDB Molecule:retinoblastoma-associated protein; PDBTitle: retinoblastoma pocket complexed with sv40 large t antigen 79 d1p9ka_ not modelled 6.8 23 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 80 d2plsa1 not modelled 6.7 16 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 81 d1qcsa1 not modelled 6.7 43 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 82 d2vera1 not modelled 6.7 40 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Dr-family adhesin 83 c3llbA_ not modelled 6.7 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1 84 c2qcqA_ not modelled 6.6 38 PDB header:signaling protein Chain: A: PDB Molecule:bone morphogenetic protein 3; PDBTitle: crystal structure of bone morphogenetic protein-3 (bmp-3) 85 d1uhta_ not modelled 6.6 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 86 c2p28A_ not modelled 6.6 38 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-2; PDBTitle: structure of the phe2 and phe3 fragments of the integrin beta2 subunit 87 c1fftG_ not modelled 6.6 12 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 88 d1h3ga1 not modelled 6.6 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 89 c2gyrB_ not modelled 6.6 38 PDB header:hormone/growth factor Chain: B: PDB Molecule:neurotrophic factor artemin, isoform 3; PDBTitle: crystal structure of human artemin 90 c2rf9D_ not modelled 6.5 29 PDB header:transferase Chain: D: PDB Molecule:erbb receptor feedback inhibitor 1; PDBTitle: crystal structure of the complex between the egfr kinase2 domain and a mig6 peptide 91 d2oaia1 not modelled 6.5 23 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 92 c3pv4A_ not modelled 6.5 7 PDB header:hydrolase Chain: A: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (delta-pdz2 variant) 93 d1vjja2 not modelled 6.4 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 94 c1zkzA_ not modelled 6.4 38 PDB header:hormone/growth factor Chain: A: PDB Molecule:growth/differentiation factor 2; PDBTitle: crystal structure of bmp9 95 c2hczX_ not modelled 6.4 38 PDB header:allergen Chain: X: PDB Molecule:beta-expansin 1a; PDBTitle: crystal structure of expb1 (zea m 1), a beta-expansin and group-12 pollen allergen from maize 96 d2r7ga2 not modelled 6.4 7 Fold:Cyclin-like Superfamily:Cyclin-like Family:Retinoblastoma tumor suppressor domains 97 d1jpca_ not modelled 6.4 15 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 98 c2odkD_ not modelled 6.4 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea 99 c3htxA_ not modelled 6.4 17 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0