PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1c8nc_

Fold library id	Fold	Superfamily	Family
d1c8nc_	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tombusviridae-like VP

Links to external resources
Added to library: Tue Mar 16 13:52:01 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G V S R A G G F V T A P V I G A M V T R P T V P R F G M R G N S T V V S N S E L I L N L T P I A L A Y T V Q S L P L I A T Q P A W L G T I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
B
S S
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D N Y S K W R W V S L R I I Y S P K C P T T T S G T V A M C L S Y D R N D V A P G S R V Q L S Q T Y K A I N F P P Y A G Y D G A A I L N T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
T T S
S S S T T
T T
G G G T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V T P T S A I Y V D V D V T R F D K A W Y S T I G T A A F A A L T A F D Q N Q F C P C T V H I G S D G G P A V A V P P G D I F F K Y V I E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G
S S S
T S
T T T
S
S
S S
B

. . . . . . . . .

Sequence I E P I N P T M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	V	S	R	A	G	G	F	V	T	A	P	V	I	G	A	M	V	T	R	P	T	V	P	R	F	G	M	R	G	N	S	T	V	V	S	N	S	E	L	I	L	N	L	T	P	I	A	L	A	Y	T	V	Q	S	L	P	L	I	A	T	Q	P	A	W	L	G	T	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S																	T	T																B		S	S										T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	N	Y	S	K	W	R	W	V	S	L	R	I	I	Y	S	P	K	C	P	T	T	T	S	G	T	V	A	M	C	L	S	Y	D	R	N	D	V	A	P	G	S	R	V	Q	L	S	Q	T	Y	K	A	I	N	F	P	P	Y	A	G	Y	D	G	A	A	I	L	N	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																	S		T	T													T	T	S				S	S							S	T	T						T	T			G	G	G	T					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	T	P	T	S	A	I	Y	V	D	V	D	V	T	R	F	D	K	A	W	Y	S	T	I	G	T	A	A	F	A	A	L	T	A	F	D	Q	N	Q	F	C	P	C	T	V	H	I	G	S	D	G	G	P	A	V	A	V	P	P	G	D	I	F	F	K	Y	V	I	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T								G	G	G		S	S	S												T	S						T	T	T		S									S			S	S		B
	.	.	.	.	.	.	.	.	.
Sequence	I	E	P	I	N	P	T	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T