PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1ng0c_

Fold library id	Fold	Superfamily	Family
d1ng0c_	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tombusviridae-like VP

Links to external resources
Added to library: Tue Mar 16 14:39:22 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V S R P L N P P A A V G S T L K A G R G R T A G V S D W F D T G M I T S Y L G G F Q R T A G T T D S Q V F I V S P A A L D R V G T I A K A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T S
S
S
S S
S G G G
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A L W R P K H W E I V Y L P R C S T Q T D G S I E M G F L L D Y A D S V P T N T R T M A S S T S F T T S N V W G G G D G S S L L H T S M K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
T T S
S T T S T T
G G G G G G T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M G N A V T S A L P C D E F S N K W F K L S W S T P E E S E N A H L T D T Y V P A R F V V R S D F P V V T A D Q P G H L W L R S R I L L K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G G T T
S
S S S
T T T
S S
S S

. . . . . . . .

Sequence S V S P S T N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	S	R	P	L	N	P	P	A	A	V	G	S	T	L	K	A	G	R	G	R	T	A	G	V	S	D	W	F	D	T	G	M	I	T	S	Y	L	G	G	F	Q	R	T	A	G	T	T	D	S	Q	V	F	I	V	S	P	A	A	L	D	R	V	G	T	I	A	K	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S										S	S			T	T			S						S												S		S	S								S	G	G	G									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	L	W	R	P	K	H	W	E	I	V	Y	L	P	R	C	S	T	Q	T	D	G	S	I	E	M	G	F	L	L	D	Y	A	D	S	V	P	T	N	T	R	T	M	A	S	S	T	S	F	T	T	S	N	V	W	G	G	G	D	G	S	S	L	L	H	T	S	M	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S		T	T											S		T	T	S					S					T	T	S								T	T			G	G	G	G	G	G	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	G	N	A	V	T	S	A	L	P	C	D	E	F	S	N	K	W	F	K	L	S	W	S	T	P	E	E	S	E	N	A	H	L	T	D	T	Y	V	P	A	R	F	V	V	R	S	D	F	P	V	V	T	A	D	Q	P	G	H	L	W	L	R	S	R	I	L	L	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								G	G	G	G	T	T								S				S	S	S						T	T	T										S	S			S	S
	.	.	.	.	.	.	.	.
Sequence	S	V	S	P	S	T	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G