Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	T	Q	Y	N	S	S	Y	I	F	S	I	T	L	V	A	T	L	G	G	L	L	F	G	Y	D	T	A	V	I	S	G	T	V	E	S	L	N	T	V	F	V	A	P	Q	N	L	S	E	S	A	A	N	S	L	L	G	F	C
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																						?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	A	S	A	L	I	G	C	I	I	G	G	A	L	G	G	Y	C	S	N	R	F	G	R	R	D	S	L	K	I	A	A	V	L	F	F	I	S	G	V	G	S	A	W	P	E	L	G	F	T	S	I	N	P	D	N	T	V	P	V
Secondary structure
SS confidence
Disorder																																															?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	L	A	G	Y	V	P	E	F	V	I	Y	R	I	I	G	G	I	G	V	G	L	A	S	M	L	S	P	M	Y	I	A	E	L	A	P	A	H	I	R	G	K	L	V	S	F	N	Q	F	A	I	I	F	G	Q	L	L	V	Y	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	N	Y	F	I	A	R	S	G	D	A	S	W	L	N	T	D	G	W	R	Y	M	F	A	S	E	C	I	P	A	L	L	F	L	M	L	L	Y	T	V	P	E	S	P	R	W	L	M	S	R	G	K	Q	E	Q	A	E	G	I	L
Secondary structure
SS confidence
Disorder											?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	K	I	M	G	N	T	L	A	T	Q	A	V	Q	E	I	K	H	S	L	D	H	G	R	K	T	G	G	R	L	L	M	F	G	V	G	V	I	V	I	G	V	M	L	S	I	F	Q	Q	F	V	G	I	N	V	V	L	Y	Y	A
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		P	E	V	F	K	T	L	G	A	S	T	D	I	A	L	L	Q	T	I	I	V	G	V	I	N	L	T	F	T	V	L	A	I	M	T	V	D	K	F	G	R	K	P	L	Q	I	I	G	A	L	G	M	A	I	G	M	F	S	L	G
Secondary structure
SS confidence
Disorder								?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		T	A	F	Y	T	Q	A	P	G	I	V	A	L	L	S	M	L	F	Y	V	A	A	F	A	M	S	W	G	P	V	C	W	V	L	L	S	E	I	F	P	N	A	I	R	G	K	A	L	A	I	A	V	A	A	Q	W	L	A	N	Y
Secondary structure
SS confidence
Disorder																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		F	V	S	W	T	F	P	M	M	D	K	N	S	W	L	V	A	H	F	H	N	G	F	S	Y	W	I	Y	G	C	M	G	V	L	A	A	L	F	M	W	K	F	V	P	E	T	K	G	K	T	L	E	E	L	E	A	L	W	E	P
Secondary structure
SS confidence
Disorder														?	?	?	?	?																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.
Sequence		E	T	K	K	T	Q	Q	T	A	T	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pw4 chain A Region: 7 - 477 Aligned: 408 Modelled: 415 Confidence: 100.0% Identity: 12% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 3o7p chain A Region: 7 - 466 Aligned: 407 Modelled: 429 Confidence: 99.9% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Phyre2 PDB 2xut chain C Region: 8 - 459 Aligned: 444 Modelled: 452 Confidence: 99.9% Identity: 10% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Phyre2 PDB 1pv7 chain A Region: 6 - 476 Aligned: 407 Modelled: 422 Confidence: 99.9% Identity: 11% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 2gfp chain A Region: 13 - 464 Aligned: 374 Modelled: 395 Confidence: 99.9% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Phyre2 PDB 1fs1 chain B domain 1 Region: 467 - 479 Aligned: 13 Modelled: 13 Confidence: 40.9% Identity: 46% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 3ff5 chain B Region: 465 - 479 Aligned: 15 Modelled: 15 Confidence: 34.0% Identity: 33% PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p Phyre2 PDB 3nd0 chain A Region: 405 - 484 Aligned: 80 Modelled: 80 Confidence: 28.5% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Phyre2 PDB 1fs2 chain B domain 1 Region: 467 - 483 Aligned: 17 Modelled: 17 Confidence: 25.8% Identity: 35% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 2w85 chain A Region: 465 - 479 Aligned: 15 Modelled: 15 Confidence: 25.7% Identity: 33% PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 Phyre2 PDB 1nex chain A domain 1 Region: 467 - 487 Aligned: 21 Modelled: 21 Confidence: 25.5% Identity: 19% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 2ht2 chain B Region: 405 - 484 Aligned: 80 Modelled: 80 Confidence: 25.3% Identity: 13% PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex Phyre2 PDB 2ovr chain A domain 1 Region: 467 - 487 Aligned: 21 Modelled: 21 Confidence: 23.3% Identity: 33% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 3c9p chain A Region: 465 - 477 Aligned: 13 Modelled: 13 Confidence: 20.3% Identity: 31% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 Phyre2 PDB 1xpj chain A Region: 465 - 482 Aligned: 18 Modelled: 18 Confidence: 18.1% Identity: 39% Fold: HAD-like Superfamily: HAD-like Family: Hypothetical protein VC0232 Phyre2 PDB 1kpl chain A Region: 405 - 484 Aligned: 80 Modelled: 80 Confidence: 17.9% Identity: 16% Fold: Clc chloride channel Superfamily: Clc chloride channel Family: Clc chloride channel Phyre2 PDB 2xc7 chain A Region: 458 - 490 Aligned: 33 Modelled: 33 Confidence: 17.6% Identity: 12% PDB header:rna binding protein Chain: A: PDB Molecule:phosphorylated adapter rna export protein; PDBTitle: solution structure of phax-rbd in complex with ssrna Phyre2 PDB 1ofc chain X domain 1 Region: 465 - 479 Aligned: 15 Modelled: 15 Confidence: 15.0% Identity: 33% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Myb/SANT domain Phyre2 PDB 1y7o chain A domain 1 Region: 465 - 491 Aligned: 27 Modelled: 27 Confidence: 14.6% Identity: 26% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 2g9p chain A Region: 74 - 87 Aligned: 14 Modelled: 14 Confidence: 13.7% Identity: 36% PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom Phyre2 1 d1pw4a_ 2 c3o7pA_ 3 c2xutC_ 4 d1pv7a_ 5 c2gfpA_ 6 d1fs1b1 7 c3ff5B_ 8 c3nd0A_ 9 d1fs2b1 10 c2w85A_ 11 d1nexa1 12 c2ht2B_ 13 d2ovra1 14 c3c9pA_ 15 d1xpja_ 16 d1kpla_ 17 c2xc7A_ 18 d1ofcx1 19 d1y7oa1 20 c2g9pA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pw4a_ 100.0 12 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 2 c3o7pA_ 99.9 12 PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) 3 c2xutC_ 99.9 10 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 4 d1pv7a_ 99.9 11 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 5 c2gfpA_ 99.9 12 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 6 d1fs1b1 40.9 46 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 7 c3ff5B_ 34.0 33 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 8 c3nd0A_ 28.5 18 PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter 9 d1fs2b1 25.8 35 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 10 c2w85A_ 25.7 33 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 11 d1nexa1 25.5 19 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 12 c2ht2B_ 25.3 13 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 13 d2ovra1 23.3 33 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 14 c3c9pA_ 20.3 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 15 d1xpja_ 18.1 39 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 16 d1kpla_ 17.9 16 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 17 c2xc7A_ 17.6 12 PDB header:rna binding protein Chain: A: PDB Molecule:phosphorylated adapter rna export protein; PDBTitle: solution structure of phax-rbd in complex with ssrna 18 d1ofcx1 15.0 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 19 d1y7oa1 14.6 26 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 20 c2g9pA_ 13.7 36 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 21 d1otsa_ not modelled 12.7 13 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 22 d2a26a1 not modelled 11.5 40 Fold:Long alpha-hairpin Superfamily:Calcyclin-binding protein-like Family:Siah interacting protein N terminal domain-like 23 d1agxa_ not modelled 10.6 20 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 24 c3mmyF_ not modelled 10.3 46 PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 25 c1cirA_ not modelled 10.2 30 PDB header:serine protease inhibitor Chain: A: PDB Molecule:chymotrypsin inhibitor 2; PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)] 26 c2p1nD_ not modelled 9.7 33 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 27 c1egpA_ not modelled 9.4 31 PDB header:proteinase inhibitor Chain: A: PDB Molecule:eglin-c; PDBTitle: proteinase inhibitor eglin c with hydrolysed reactive center 28 d2p7vb1 not modelled 9.2 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 29 c1pzmB_ not modelled 8.7 19 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hgprt-ase from leishmania tarentolae in complex2 with gmp 30 c1ysmA_ not modelled 8.6 36 PDB header:metal binding protein Chain: A: PDB Molecule:calcyclin-binding protein; PDBTitle: nmr structure of n-terminal domain (residues 1-77) of siah-2 interacting protein. 31 d1ysma1 not modelled 8.6 36 Fold:Long alpha-hairpin Superfamily:Calcyclin-binding protein-like Family:Siah interacting protein N terminal domain-like 32 c2f9jP_ not modelled 8.6 35 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 33 c1nexC_ not modelled 8.6 19 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 34 d1hh1a_ not modelled 8.5 36 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 35 d2j85a1 not modelled 8.5 14 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 36 d1g9sa_ not modelled 8.5 23 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 37 d1fsga_ not modelled 8.4 33 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 38 d1x9na2 not modelled 8.4 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 39 d1pzma_ not modelled 8.3 19 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 40 c3nxkE_ not modelled 8.1 7 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 41 d2hkja1 not modelled 7.6 22 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Topoisomerase VI-B subunit middle domain 42 d2ipqx1 not modelled 7.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:STY4665 C-terminal domain-like 43 d1b78a_ not modelled 7.3 18 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 44 c2wltA_ not modelled 7.1 15 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 45 c3qnqD_ not modelled 7.1 13 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 46 c2jbhA_ not modelled 7.0 25 PDB header:transferase Chain: A: PDB Molecule:phosphoribosyltransferase domain-containing protein 1; PDBTitle: human phosphoribosyl transferase domain containing 1 47 d1xjsa_ not modelled 6.9 14 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 48 d1zq1a2 not modelled 6.9 19 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 49 d1wmib1 not modelled 6.9 25 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:RelB-like Family:RelB-like 50 c2inpD_ not modelled 6.9 33 PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex 51 d2csba1 not modelled 6.8 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 52 d1ee8a1 not modelled 6.8 31 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 53 d1nnsa_ not modelled 6.7 13 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 54 d1cjba_ not modelled 6.7 32 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 55 c3pvpA_ not modelled 6.7 8 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 56 c3d8lB_ not modelled 6.6 53 PDB header:viral protein Chain: B: PDB Molecule:orf12; PDBTitle: crystal structure of orf12 from the lactococcus lactis bacteriophage2 p2 57 d1wfza_ not modelled 6.5 27 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 58 d4pgaa_ not modelled 6.4 29 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 59 d1j1va_ not modelled 6.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 60 d3bzka3 not modelled 6.4 27 Fold:Tex N-terminal region-like Superfamily:Tex N-terminal region-like Family:Tex N-terminal region-like 61 c2kjyA_ not modelled 6.4 45 PDB header:signaling protein Chain: A: PDB Molecule:protein phosphatase 1 regulatory subunit 12a; PDBTitle: mypt1(658-714) 62 d1pyya2 not modelled 6.3 41 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 63 d1l8qa1 not modelled 6.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 64 d1hgxa_ not modelled 6.2 19 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 65 d1tdza1 not modelled 6.2 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 66 c3orgB_ not modelled 6.1 17 PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter 67 c2cfmA_ not modelled 6.1 24 PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from pyrococcus furiosus 68 d1v7ra_ not modelled 6.0 21 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 69 c3o7mD_ not modelled 6.0 27 PDB header:transferase Chain: D: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 1.98 angstrom resolution crystal structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-2) from bacillus anthracis str. 'ames3 ancestor' 70 c2ovqA_ not modelled 5.9 33 PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 71 d1xeqa1 not modelled 5.8 50 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:N-terminal, RNA-binding domain of nonstructural protein NS1 72 d1rp5a2 not modelled 5.8 35 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 73 c3dh4A_ not modelled 5.8 9 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 74 c3bezC_ not modelled 5.8 11 PDB header:hydrolase Chain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals 75 c3p2lD_ not modelled 5.8 11 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis 76 d1rsob_ not modelled 5.7 35 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 77 d2d6fa2 not modelled 5.7 6 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 78 c1wnfA_ not modelled 5.6 25 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 79 c1by0A_ not modelled 5.6 40 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 80 c3lk2T_ not modelled 5.6 37 PDB header:protein binding Chain: T: PDB Molecule:leucine-rich repeat-containing protein 16a; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil 81 c2zhhA_ not modelled 5.6 8 PDB header:transcription Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr; PDBTitle: crystal structure of soxr 82 d1nh2d1 not modelled 5.5 19 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 83 d2ak3a1 not modelled 5.4 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 84 c3r66A_ not modelled 5.4 50 PDB header:viral protein/antiviral protein Chain: A: PDB Molecule:non-structural protein 1; PDBTitle: crystal structure of human isg15 in complex with ns1 n-terminal region2 from influenza virus b, northeast structural genomics consortium3 target ids hx6481, hr2873, and or2 85 d2ocda1 not modelled 5.4 20 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 86 d1u14a_ not modelled 5.3 10 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 87 c2yxhB_ not modelled 5.3 44 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima 88 c2z7eB_ not modelled 5.3 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 89 d1su0b_ not modelled 5.3 23 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 90 c1y7oE_ not modelled 5.3 23 PDB header:hydrolase Chain: E: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: the structure of streptococcus pneumoniae a153p clpp 91 d1q08a_ not modelled 5.2 33 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 92 c2jmlA_ not modelled 5.2 21 PDB header:transcription Chain: A: PDB Molecule:dna binding domain/transcriptional regulator; PDBTitle: solution structure of the n-terminal domain of cara repressor 93 d1k25a2 not modelled 5.2 24 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 94 d1j7ja_ not modelled 5.1 23 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 95 d1csei_ not modelled 5.1 24 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 96 c2bbjB_ not modelled 5.1 14 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 97 c1lnlB_ not modelled 5.1 14 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemocyanin; PDBTitle: structure of deoxygenated hemocyanin from rapana thomasiana 98 c3oc5A_ not modelled 5.1 32 PDB header:cell adhesion Chain: A: PDB Molecule:toxin coregulated pilus biosynthesis protein f; PDBTitle: crystal structure of the vibrio cholerae secreted colonization factor2 tcpf 99 d1jo5a_ not modelled 5.0 20 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0