Email l.a.kelley@imperial.ac.uk Description P77173 Date Thu Jan 5 12:25:58 GMT 2012 Unique Job ID e842081890ccb440

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1f46a_ 100.0 99 Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain 2 c1qmiC_ 79.0 13 PDB header:rna 3'-terminal phosphate cyclase Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase; PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology 3 c2kncA_ 75.4 18 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 4 c3sokB_ 55.5 19 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 5 d2pila_ 48.9 32 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 6 c2kncB_ 45.6 35 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 7 d2axtj1 45.0 33 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 8 c1afoB_ 43.6 36 PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures 9 c2k21A_ 41.0 15 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 10 c2jwaA_ 40.6 26 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 11 d1oqwa_ 39.3 29 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 12 c3pqvD_ 38.3 17 PDB header:unknown function Chain: D: PDB Molecule:rcl1 protein; PDBTitle: cyclase homolog 13 c2l9uA_ 38.1 24 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 14 c2it3B_ 33.2 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0130 protein ph1069; PDBTitle: structure of ph1069 protein from pyrococcus horikoshii 15 c2dvkA_ 32.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0130 protein ape0816; PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix 16 d2o02a1 31.3 14 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 17 c2qg3B_ 31.0 32 PDB header:unknown function Chain: B: PDB Molecule:upf0130 protein af_2059; PDBTitle: crystal structure of a tyw3 methyltransferase-like protein (af_2059)2 from archaeoglobus fulgidus dsm 4304 at 1.95 a resolution 18 d1fftb2 30.7 20 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 19 c2jp3A_ 30.3 20 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 20 c2c1nA_ 28.5 14 PDB header:signaling protein Chain: A: PDB Molecule:14-3-3 protein zeta/delta; PDBTitle: molecular basis for the recognition of phosphorylated and2 phosphoacetylated histone h3 by 14-3-3 21 d1tlja_ not modelled 26.6 25 Fold:SSo0622-like Superfamily:SSo0622-like Family:SSo0622-like 22 c1tljA_ not modelled 26.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0130 protein sso0622; PDBTitle: crystal structure of conserved protein of unknown function2 sso0622 from sulfolobus solfataricus 23 d1q1la_ not modelled 25.0 15 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 24 d1hywa_ not modelled 24.0 21 Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW 25 c1ztbA_ not modelled 22.9 16 PDB header:ligase Chain: A: PDB Molecule:chorismate synthase; PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis 26 d1xrda1 not modelled 22.8 30 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 27 d1wfya_ not modelled 22.5 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 28 c2jo1A_ not modelled 22.1 33 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 29 c2k1aA_ not modelled 21.9 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 30 d1ijda_ not modelled 21.6 60 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 31 c2x2oA_ not modelled 21.1 15 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 32 d1o9da_ not modelled 18.4 7 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 33 d1mx3a2 not modelled 17.9 19 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 34 d1nkza_ not modelled 17.5 43 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 35 c2mltB_ not modelled 17.2 33 PDB header:toxin (hemolytic polypeptide) Chain: B: PDB Molecule:melittin; PDBTitle: melittin 36 c2npmB_ not modelled 16.9 7 PDB header:protein binding Chain: B: PDB Molecule:14-3-3 domain containing protein; PDBTitle: crystal structure of cryptosporidium parvum 14-3-3 protein2 in complex with peptide 37 c2mltA_ not modelled 16.9 33 PDB header:toxin (hemolytic polypeptide) Chain: A: PDB Molecule:melittin; PDBTitle: melittin 38 d1c99a_ not modelled 16.0 26 Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C 39 d1qw1a1 not modelled 16.0 16 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 40 d1qxoa_ not modelled 15.9 14 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 41 c1qcrD_ not modelled 15.1 25 PDB header: PDB COMPND: 42 c1fftG_ not modelled 14.2 18 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 43 c2kluA_ not modelled 14.1 32 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 44 c3u5eL_ not modelled 14.0 14 PDB header:ribosome Chain: L: PDB Molecule:60s ribosomal protein l13-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution 45 c3e6yB_ not modelled 13.5 9 PDB header:signaling protein Chain: B: PDB Molecule:14-3-3-like protein c; PDBTitle: structure of 14-3-3 in complex with the differentiation-inducing agent2 cotylenin a 46 c2kxhB_ not modelled 13.5 50 PDB header:protein binding Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1; PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide 47 d2o8pa1 not modelled 13.1 17 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 48 c4a1bO_ not modelled 12.9 22 PDB header:ribosome Chain: O: PDB Molecule:rpl28; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3. 49 c2k9yA_ not modelled 12.8 23 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 50 c2k9yB_ not modelled 12.8 23 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 51 c2hg5D_ not modelled 12.2 4 PDB header:membrane protein Chain: D: PDB Molecule:kcsa channel; PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter 52 c2zxeG_ not modelled 12.2 20 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 53 d1ydla1 not modelled 11.9 20 Fold:TFB5-like Superfamily:TFB5-like Family:TFB5-like 54 c3bwwA_ not modelled 11.8 23 PDB header:metal binding protein Chain: A: PDB Molecule:protein of unknown function duf692/cog3220; PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution 55 c3cs5B_ not modelled 11.6 27 PDB header:photosynthesis Chain: B: PDB Molecule:phycobilisome degradation protein nbla; PDBTitle: nbla protein from synechococcus elongatus pcc 7942 56 c2j7aC_ not modelled 11.2 20 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 57 d2nlya1 not modelled 10.7 12 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 58 c3dgpB_ not modelled 10.5 21 PDB header:transcription Chain: B: PDB Molecule:rna polymerase ii transcription factor b subunit 5; PDBTitle: crystal structure of the complex between tfb5 and the c-terminal2 domain of tfb2 59 d1ul7a_ not modelled 10.5 3 Fold:TBP-like Superfamily:KA1-like Family:Kinase associated domain 1, KA1 60 c2pcrA_ not modelled 10.5 14 PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5 61 d1v54i_ not modelled 9.0 13 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIc Family:Mitochondrial cytochrome c oxidase subunit VIc 62 c3mk7F_ not modelled 9.0 19 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 63 d2bkra1 not modelled 8.8 6 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 64 d1rlja_ not modelled 8.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 65 c3n23E_ not modelled 8.5 27 PDB header:hydrolase Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump 66 c2latA_ not modelled 8.2 12 PDB header:membrane protein Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein PDBTitle: solution structure of a human minimembrane protein ost4 67 d1xzpa3 not modelled 8.1 20 Fold:Folate-binding domain Superfamily:Folate-binding domain Family:TrmE formyl-THF-binding domain 68 c1xzqB_ not modelled 8.1 20 PDB header:hydrolase Chain: B: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf 69 c2q74B_ not modelled 7.8 21 PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: mycobacterium tuberculosis suhb 70 c2g2bA_ not modelled 7.7 7 PDB header:immune system Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: nmr structure of the human allograft inflammatory factor 1 71 c2i7gA_ not modelled 7.6 31 PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens 72 c3otbB_ not modelled 7.4 23 PDB header:transferase Chain: B: PDB Molecule:trna(his) guanylyltransferase; PDBTitle: crystal structure of human trnahis guanylyltransferase (thg1) - dgtp2 complex 73 c2qflA_ not modelled 7.3 21 PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli 74 c1s7fA_ not modelled 7.3 6 PDB header:transferase Chain: A: PDB Molecule:acetyl transferase; PDBTitle: riml- ribosomal l7/l12 alpha-n-protein acetyltransferase crystal form2 i (apo) 75 c2l2tA_ not modelled 7.2 14 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 76 c1qleB_ not modelled 7.2 16 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 77 c1ar1B_ not modelled 7.2 16 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 78 c3ih5A_ not modelled 7.2 18 PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron 79 d3clsd1 not modelled 6.8 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 80 c3dwcA_ not modelled 6.7 21 PDB header:hydrolase Chain: A: PDB Molecule:metallocarboxypeptidase; PDBTitle: trypanosoma cruzi metallocarboxypeptidase 1 81 d1ap4a_ not modelled 6.7 17 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 82 c2rmzA_ not modelled 6.5 35 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 83 c1bh1A_ not modelled 6.2 33 PDB header:toxin Chain: A: PDB Molecule:melittin; PDBTitle: structural studies of d-pro melittin, nmr, 20 structures 84 c2l16A_ not modelled 6.0 38 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 85 d1ueka2 not modelled 6.0 31 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE 86 c3tcvB_ not modelled 5.9 29 PDB header:transferase Chain: B: PDB Molecule:gcn5-related n-acetyltransferase; PDBTitle: crystal structure of a gcn5-related n-acetyltransferase from brucella2 melitensis 87 d1fi5a_ not modelled 5.8 15 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 88 c1fi5A_ not modelled 5.8 15 PDB header:contractile protein Chain: A: PDB Molecule:protein (troponin c); PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i. 89 d1a0pa1 not modelled 5.7 11 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 90 d1lf6a2 not modelled 5.6 14 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 91 d3ehbb2 not modelled 5.5 16 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 92 d1yoba1 not modelled 5.4 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 93 d2fcka1 not modelled 5.4 16 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 94 c2b19A_ not modelled 5.4 22 PDB header:neuropeptide Chain: A: PDB Molecule:neuropeptide k; PDBTitle: solution structure of mammalian tachykinin peptide,2 neuropeptide k 95 d3dtub2 not modelled 5.3 19 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 96 c3kdpH_ not modelled 5.3 27 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 97 c3kdpG_ not modelled 5.3 27 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 98 c3owcA_ not modelled 5.3 16 PDB header:transferase Chain: A: PDB Molecule:probable acetyltransferase; PDBTitle: crystal structure of gnat superfamily protein pa2578 from pseudomonas2 aeruginosa 99 c3fj2A_ not modelled 5.2 14 PDB header:unknown function Chain: A: PDB Molecule:monooxygenase-like protein; PDBTitle: crystal structure of a monooxygenase-like protein (lin2316) from2 listeria innocua at 1.85 a resolution