Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

R

Y

D

N

V

K

P

C

P

F

C

G

C

P

S

V

T

V

K

A

I

S

G

Y

Y

R

A

K

C

N

G

C

E

S

R

T

G

Y

G

G

S

E

K

E

A

L

E

R

W

N

K

R

T

T

G

N

N

N

G

Secondary structure

SS confidence

Disorder

?

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?

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?

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?

?

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?

?

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Disorder confidence

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Sequence

G

V

H

V

Secondary structure

SS confidence

Disorder

?

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nui chain A Region: 8 - 37 Aligned: 28 Modelled: 30 Confidence: 68.9% Identity: 32% PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein Phyre2 PDB 1wii chain A Region: 1 - 36 Aligned: 36 Modelled: 36 Confidence: 54.8% Identity: 19% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Putative zinc binding domain Phyre2 PDB 2dcu chain B Region: 9 - 37 Aligned: 29 Modelled: 29 Confidence: 46.2% Identity: 31% PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp Phyre2 PDB 2drp chain A domain 2 Region: 6 - 12 Aligned: 7 Modelled: 7 Confidence: 45.7% Identity: 86% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1k81 chain A Region: 9 - 36 Aligned: 28 Modelled: 28 Confidence: 45.2% Identity: 25% Fold: Zinc-binding domain of translation initiation factor 2 beta Superfamily: Zinc-binding domain of translation initiation factor 2 beta Family: Zinc-binding domain of translation initiation factor 2 beta Phyre2 PDB 2au3 chain A Region: 8 - 52 Aligned: 39 Modelled: 45 Confidence: 44.6% Identity: 33% PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) Phyre2 PDB 1nee chain A Region: 9 - 37 Aligned: 29 Modelled: 29 Confidence: 42.4% Identity: 21% PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum Phyre2 PDB 3cw2 chain M Region: 9 - 37 Aligned: 29 Modelled: 29 Confidence: 39.9% Identity: 21% PDB header:translation Chain: M: PDB Molecule:translation initiation factor 2 subunit beta; PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus . Phyre2 PDB 1d0q chain A Region: 8 - 33 Aligned: 24 Modelled: 26 Confidence: 39.6% Identity: 42% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: DNA primase zinc finger Phyre2 PDB 4a17 chain Y Region: 8 - 30 Aligned: 23 Modelled: 23 Confidence: 36.4% Identity: 35% PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. Phyre2 PDB 1vqo chain Z domain 1 Region: 8 - 31 Aligned: 24 Modelled: 24 Confidence: 36.2% Identity: 25% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L37ae Phyre2 PDB 2fiy chain A domain 1 Region: 9 - 36 Aligned: 28 Modelled: 28 Confidence: 35.5% Identity: 29% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 1ysh chain D Region: 8 - 31 Aligned: 24 Modelled: 24 Confidence: 35.0% Identity: 33% PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e Phyre2 PDB 2yrm chain A Region: 30 - 60 Aligned: 27 Modelled: 31 Confidence: 34.5% Identity: 37% PDB header:gene regulation Chain: A: PDB Molecule:b-cell lymphoma 6 protein; PDBTitle: solution structure of the 1st zf-c2h2 domain from human b-2 cell lymphoma 6 protein Phyre2 PDB 2zkr chain Z Region: 8 - 31 Aligned: 24 Modelled: 24 Confidence: 34.4% Identity: 25% PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1jj2 chain Y Region: 8 - 30 Aligned: 23 Modelled: 23 Confidence: 33.8% Identity: 22% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L37ae Phyre2 PDB 2e9h chain A Region: 9 - 44 Aligned: 36 Modelled: 36 Confidence: 33.3% Identity: 25% PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 Phyre2 PDB 2qa4 chain Z Region: 8 - 31 Aligned: 24 Modelled: 24 Confidence: 33.1% Identity: 25% PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit Phyre2 PDB 1nnj chain A Region: 7 - 36 Aligned: 29 Modelled: 30 Confidence: 31.9% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna Phyre2 PDB 1ffk chain W Region: 8 - 31 Aligned: 24 Modelled: 24 Confidence: 31.9% Identity: 29% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein L37ae Phyre2 1 c1nuiA_ 2 d1wiia_ 3 c2dcuB_ 4 d2drpa2 5 d1k81a_ 6 c2au3A_ 7 c1neeA_ 8 c3cw2M_ 9 d1d0qa_ 10 c4a17Y_ 11 d1vqoz1 12 d2fiya1 13 c1yshD_ 14 c2yrmA_ 15 c2zkrz_ 16 d1jj2y_ 17 c2e9hA_ 18 c2qa4Z_ 19 c1nnjA_ 20 d1ffkw_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1nuiA_ 68.9 32 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 2 d1wiia_ 54.8 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 3 c2dcuB_ 46.2 31 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp 4 d2drpa2 45.7 86 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 5 d1k81a_ 45.2 25 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 6 c2au3A_ 44.6 33 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 7 c1neeA_ 42.4 21 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum 8 c3cw2M_ 39.9 21 PDB header:translation Chain: M: PDB Molecule:translation initiation factor 2 subunit beta; PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus . 9 d1d0qa_ 39.6 42 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 10 c4a17Y_ 36.4 35 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 11 d1vqoz1 36.2 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 12 d2fiya1 35.5 29 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 13 c1yshD_ 35.0 33 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 14 c2yrmA_ 34.5 37 PDB header:gene regulation Chain: A: PDB Molecule:b-cell lymphoma 6 protein; PDBTitle: solution structure of the 1st zf-c2h2 domain from human b-2 cell lymphoma 6 protein 15 c2zkrz_ 34.4 25 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 16 d1jj2y_ 33.8 22 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 17 c2e9hA_ 33.3 25 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 18 c2qa4Z_ 33.1 25 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 19 c1nnjA_ 31.9 21 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 20 d1ffkw_ 31.9 29 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 21 c3cc4Z_ not modelled 29.6 25 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 22 c1s1i9_ not modelled 28.2 29 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 23 c3jyw9_ not modelled 27.7 29 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 24 c3hi2C_ not modelled 26.2 57 PDB header:dna binding protein/toxin Chain: C: PDB Molecule:hth-type transcriptional regulator mqsa(ygit); PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022) 25 c1x31D_ not modelled 26.0 67 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 26 c3eswA_ not modelled 25.9 27 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 27 d1wd2a_ not modelled 25.2 45 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 28 c3k7aM_ not modelled 24.1 19 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 29 d1g6ma_ not modelled 23.7 100 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 30 c2kdxA_ not modelled 22.3 21 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 31 d1v6pa_ not modelled 21.7 100 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 32 d1x3za1 not modelled 21.2 27 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 33 c1k82D_ not modelled 21.2 33 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 34 d1pfta_ not modelled 20.3 22 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 35 c2gb5B_ not modelled 18.6 26 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 36 c2kvgA_ not modelled 18.5 78 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 37 d1i4pa1 not modelled 17.7 30 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 38 c3izbP_ not modelled 17.0 44 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 39 d1dx8a_ not modelled 17.0 32 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 40 c2xqyA_ not modelled 16.9 26 PDB header:immune system/viral protein Chain: A: PDB Molecule:envelope glycoprotein h; PDBTitle: crystal structure of pseudorabies core fragment of2 glycoprotein h in complex with fab d6.3 41 d2ds5a1 not modelled 16.7 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 42 c1ovxB_ not modelled 16.3 40 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 43 d1ubdc4 not modelled 16.0 71 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 44 c1hk8A_ not modelled 15.4 26 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 45 d1hk8a_ not modelled 15.4 26 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 46 c3iz6P_ not modelled 15.1 44 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 47 c2ds8A_ not modelled 15.1 40 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 48 d1qm7a_ not modelled 13.8 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 49 d2g6ta1 not modelled 13.3 41 Fold:CAC2185-like Superfamily:CAC2185-like Family:CAC2185-like 50 d1igtb3 not modelled 13.2 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 51 d2f4ma1 not modelled 12.6 22 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 52 d1vdda_ not modelled 12.5 23 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 53 d1l1ta3 not modelled 12.3 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 54 d1tfsa_ not modelled 12.1 67 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 55 c1vddC_ not modelled 12.0 23 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 56 c3ov5A_ not modelled 10.9 44 PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: atomic structure of the xanthomonas citri virb7 globular domain. 57 d1iq9a_ not modelled 10.8 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 58 d1tdza3 not modelled 10.4 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 59 d1ntxa_ not modelled 10.3 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 60 d3ebxa_ not modelled 10.2 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 61 d1lkoa2 not modelled 9.9 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 62 c2ja1A_ not modelled 9.1 44 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor. 63 c2jvnA_ not modelled 8.9 33 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 64 c3hh7A_ not modelled 8.9 45 PDB header:toxin Chain: A: PDB Molecule:muscarinic toxin-like protein 3 homolog; PDBTitle: structural and functional characterization of a novel2 homodimeric three-finger neurotoxin from the venom of3 ophiophagus hannah (king cobra) 65 d1k3xa3 not modelled 8.7 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 66 c2riqA_ not modelled 8.5 33 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 67 d1vb0a_ not modelled 8.2 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 68 c1iclA_ not modelled 8.2 89 PDB header:de novo protein Chain: A: PDB Molecule:th1ox; PDBTitle: solution structure of designed beta-sheet mini-protein th1ox 69 c3htkC_ not modelled 8.1 50 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 70 c2f5qA_ not modelled 8.1 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 71 c2elpA_ not modelled 8.0 60 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 72 d1r2za3 not modelled 7.8 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 73 c3mv2A_ not modelled 7.7 19 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 74 d1k82a3 not modelled 7.6 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 75 d1ee8a3 not modelled 7.3 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 76 c2l4wA_ not modelled 7.2 44 PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of the xanthomonas virb7 77 c2qq0B_ not modelled 7.0 48 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp 78 c2d88A_ not modelled 6.9 33 PDB header:signaling protein, protein binding Chain: A: PDB Molecule:protein mical-3; PDBTitle: solution structure of the ch domain from human mical-32 protein 79 c3cngC_ not modelled 6.4 23 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 80 c2opfA_ not modelled 6.3 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 81 d1z84a1 not modelled 6.2 67 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 82 c2qgpA_ not modelled 5.8 43 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 83 c2eoyA_ not modelled 5.8 83 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 557-2 589) of human zinc finger protein 473 84 c2k5cA_ not modelled 5.8 71 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 85 d1yuza2 not modelled 5.7 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 86 d1qxfa_ not modelled 5.6 33 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 87 c1dvbA_ not modelled 5.5 20 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 88 d2j0151 not modelled 5.5 28 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 89 d1drsa_ not modelled 5.3 35 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Dendroaspin 90 d1wwra1 not modelled 5.3 40 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 91 c3a9fA_ not modelled 5.3 43 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the c-terminal domain of cytochrome cz2 from chlorobium tepidum 92 c2hr5B_ not modelled 5.1 63 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 93 c2xznQ_ not modelled 5.1 42 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0