Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	T	I	V	D	S	N	L	P	V	A	R	P	S	W	D	H	S	R	L	E	S	R	I	V	H	L	G	C	G	A	F	H	R	A	H	Q	A	L	Y	T	H	H	L	L	E	S	T	D	S	D	W	G	I	C	E	V	N	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	P	G	N	D	R	V	L	I	E	N	L	K	K	Q	Q	L	L	Y	T	V	A	E	K	G	A	E	S	T	E	L	K	I	I	G	S	M	K	E	A	L	H	P	E	I	D	G	C	E	G	I	L	N	A	M	A	R	P	Q	T
Secondary structure
SS confidence
Disorder				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	I	V	S	L	T	V	T	E	K	G	Y	C	A	D	A	A	S	G	Q	L	D	L	N	N	P	L	I	K	H	D	L	E	N	P	T	A	P	K	S	A	I	G	Y	I	V	E	A	L	R	L	R	R	E	K	G	L	K	A	F
Secondary structure
SS confidence
Disorder																																				?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	V	M	S	C	D	N	V	R	E	N	G	H	V	A	K	V	A	V	L	G	L	A	Q	A	R	D	P	Q	L	A	A	W	I	E	E	N	V	T	F	P	C	T	M	V	D	R	I	V	P	A	A	T	P	E	T	L	Q	E	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	D	Q	L	G	V	Y	D	P	C	A	I	A	C	E	P	F	R	Q	W	V	I	E	D	N	F	V	N	G	R	P	D	W	D	K	V	G	A	Q	F	V	A	D	V	V	P	F	E	M	M	K	L	R	M	L	N	G	S	H	S
Secondary structure
SS confidence
Disorder																												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	L	A	Y	L	G	Y	L	G	G	Y	E	T	I	A	D	T	V	T	N	P	A	Y	R	K	A	A	F	A	L	M	M	Q	E	Q	A	P	T	L	S	M	P	E	G	T	D	L	N	A	Y	A	T	L	L	I	E	R	F	S	N
Secondary structure
SS confidence
Disorder																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		P	S	L	R	H	R	T	W	Q	I	A	M	D	G	S	Q	K	L	P	Q	R	L	L	D	P	V	R	L	H	L	Q	N	G	G	S	W	R	H	L	A	L	G	V	A	G	W	M	R	Y	T	Q	G	V	D	E	Q	G	N	A	I
Secondary structure
SS confidence
Disorder											?		?	?					?	?																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		D	V	V	D	P	M	L	A	E	F	Q	K	I	N	A	Q	Y	Q	G	A	D	R	V	K	A	L	L	G	L	S	G	I	F	A	D	D	L	P	Q	N	A	D	F	V	G	A	V	T	A	A	Y	Q	Q	L	C	E	R	G	A	R
Secondary structure
SS confidence
Disorder																			?
Disorder confidence
		.	.	.	.	.	.
Sequence		E	C	V	A	A	L
Secondary structure
SS confidence
Disorder						?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1m2w chain A Region: 1 - 486 Aligned: 482 Modelled: 486 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol dehydrogenase; PDBTitle: pseudomonas fluorescens mannitol 2-dehydrogenase ternary complex with2 nad and d-mannitol Phyre2 PDB 3h2z chain A Region: 23 - 475 Aligned: 371 Modelled: 390 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase; PDBTitle: the crystal structure of mannitol-1-phosphate dehydrogenase from2 shigella flexneri Phyre2 PDB 1lj8 chain A domain 4 Region: 2 - 282 Aligned: 279 Modelled: 281 Confidence: 100.0% Identity: 41% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: 6-phosphogluconate dehydrogenase-like, N-terminal domain Phyre2 PDB 1lj8 chain A domain 3 Region: 283 - 486 Aligned: 202 Modelled: 204 Confidence: 100.0% Identity: 32% Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like Family: Mannitol 2-dehydrogenase Phyre2 PDB 2ph5 chain A Region: 21 - 207 Aligned: 150 Modelled: 161 Confidence: 50.5% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 Phyre2 PDB 3fgg chain A Region: 304 - 358 Aligned: 55 Modelled: 55 Confidence: 45.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bce2196; PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus Phyre2 PDB 2axq chain A Region: 24 - 185 Aligned: 132 Modelled: 139 Confidence: 41.2% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae Phyre2 PDB 1k4i chain A Region: 167 - 217 Aligned: 50 Modelled: 51 Confidence: 35.0% Identity: 16% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 3euw chain B Region: 21 - 199 Aligned: 135 Modelled: 156 Confidence: 27.8% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:myo-inositol dehydrogenase; PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032 Phyre2 PDB 1snn chain A Region: 167 - 213 Aligned: 46 Modelled: 47 Confidence: 27.5% Identity: 15% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 3ego chain B Region: 278 - 405 Aligned: 121 Modelled: 128 Confidence: 25.4% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:probable 2-dehydropantoate 2-reductase; PDBTitle: crystal structure of probable 2-dehydropantoate 2-reductase2 pane from bacillus subtilis Phyre2 PDB 2o8r chain A domain 3 Region: 23 - 34 Aligned: 12 Modelled: 12 Confidence: 24.5% Identity: 33% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 3mtj chain A Region: 22 - 126 Aligned: 98 Modelled: 105 Confidence: 23.5% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a Phyre2 PDB 1ceu chain A Region: 255 - 263 Aligned: 9 Modelled: 9 Confidence: 22.6% Identity: 44% PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein Phyre2 PDB 3mio chain A Region: 167 - 217 Aligned: 50 Modelled: 51 Confidence: 22.1% Identity: 24% PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 Phyre2 PDB 2o8r chain A Region: 24 - 34 Aligned: 11 Modelled: 11 Confidence: 21.5% Identity: 36% PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis Phyre2 PDB 1r0k chain A domain 2 Region: 22 - 134 Aligned: 104 Modelled: 113 Confidence: 20.2% Identity: 10% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 3nt5 chain B Region: 21 - 201 Aligned: 140 Modelled: 160 Confidence: 19.8% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase; PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose Phyre2 PDB 3h8g chain C Region: 130 - 191 Aligned: 60 Modelled: 62 Confidence: 19.7% Identity: 12% PDB header:hydrolase Chain: C: PDB Molecule:cytosol aminopeptidase; PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida Phyre2 PDB 1e5l chain A Region: 24 - 126 Aligned: 90 Modelled: 103 Confidence: 18.2% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea Phyre2 1 c1m2wA_ 2 c3h2zA_ 3 d1lj8a4 4 d1lj8a3 5 c2ph5A_ 6 c3fggA_ 7 c2axqA_ 8 d1k4ia_ 9 c3euwB_ 10 d1snna_ 11 c3egoB_ 12 d2o8ra3 13 c3mtjA_ 14 c1ceuA_ 15 c3mioA_ 16 c2o8rA_ 17 d1r0ka2 18 c3nt5B_ 19 c3h8gC_ 20 c1e5lA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1m2wA_ 100.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol dehydrogenase; PDBTitle: pseudomonas fluorescens mannitol 2-dehydrogenase ternary complex with2 nad and d-mannitol 2 c3h2zA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase; PDBTitle: the crystal structure of mannitol-1-phosphate dehydrogenase from2 shigella flexneri 3 d1lj8a4 100.0 41 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 4 d1lj8a3 100.0 32 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Mannitol 2-dehydrogenase 5 c2ph5A_ 50.5 14 PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 6 c3fggA_ 45.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bce2196; PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus 7 c2axqA_ 41.2 10 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae 8 d1k4ia_ 35.0 16 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 9 c3euwB_ 27.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:myo-inositol dehydrogenase; PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032 10 d1snna_ 27.5 15 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 11 c3egoB_ 25.4 13 PDB header:oxidoreductase Chain: B: PDB Molecule:probable 2-dehydropantoate 2-reductase; PDBTitle: crystal structure of probable 2-dehydropantoate 2-reductase2 pane from bacillus subtilis 12 d2o8ra3 24.5 33 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 13 c3mtjA_ 23.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 14 c1ceuA_ 22.6 44 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 15 c3mioA_ 22.1 24 PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 16 c2o8rA_ 21.5 36 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 17 d1r0ka2 20.2 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 18 c3nt5B_ 19.8 19 PDB header:oxidoreductase Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase; PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose 19 c3h8gC_ 19.7 12 PDB header:hydrolase Chain: C: PDB Molecule:cytosol aminopeptidase; PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida 20 c1e5lA_ 18.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea 21 d2oc5a1 not modelled 18.0 31 Fold:Ferritin-like Superfamily:Ferritin-like Family:PMT1231-like 22 d1v8fa_ not modelled 17.1 31 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 23 c3ceaA_ not modelled 17.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase; PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution 24 c1z9bA_ not modelled 15.6 17 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-2; PDBTitle: solution structure of the c1-subdomain of bacillus2 stearothermophilus translation initiation factor if2 25 c1lanA_ not modelled 15.4 13 PDB header:hydrolase (alpha-aminoacylpeptide) Chain: A: PDB Molecule:leucine aminopeptidase; PDBTitle: leucine aminopeptidase complex with l-leucinal 26 d1gyta2 not modelled 15.1 13 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 27 d1uj8a1 not modelled 15.1 18 Fold:Another 3-helical bundle Superfamily:IscX-like Family:IscX-like 28 c3docD_ not modelled 14.8 19 PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate2 dehydrogenase from brucella melitensis 29 c2c9lZ_ not modelled 14.5 33 PDB header:viral protein Chain: Z: PDB Molecule:bzlf1 trans-activator protein; PDBTitle: structure of the epstein-barr virus zebra protein 30 c3guzB_ not modelled 14.5 17 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's 31 c1dvpA_ not modelled 14.0 13 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 32 c3ketA_ not modelled 13.9 25 PDB header:transcription/dna Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator 33 c1gytG_ not modelled 13.4 13 PDB header:hydrolase Chain: G: PDB Molecule:cytosol aminopeptidase; PDBTitle: e. coli aminopeptidase a (pepa) 34 c3kzwD_ not modelled 13.1 15 PDB header:hydrolase Chain: D: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col 35 d2py6a1 not modelled 13.0 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:FkbM-like 36 c3omdB_ not modelled 12.1 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 37 d2v0fa1 not modelled 11.9 46 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 38 d1k8kg_ not modelled 11.8 15 Fold:alpha-alpha superhelix Superfamily:Arp2/3 complex 16 kDa subunit ARPC5 Family:Arp2/3 complex 16 kDa subunit ARPC5 39 d1qusa_ not modelled 11.6 14 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 40 c3n8hA_ not modelled 11.4 27 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine ligase from francisella2 tularensis 41 d2cu2a2 not modelled 11.2 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:mannose-1-phosphate guanylyl transferase 42 d1lama1 not modelled 11.2 14 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 43 c3q2kB_ not modelled 10.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca 44 d1dvpa1 not modelled 10.7 14 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 45 d2dt5a2 not modelled 10.7 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Transcriptional repressor Rex, C-terminal domain 46 d1xdpa3 not modelled 10.6 50 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 47 d1gzsb_ not modelled 10.3 18 Fold:SopE-like GEF domain Superfamily:SopE-like GEF domain Family:SopE-like GEF domain 48 d1q7ra_ not modelled 10.2 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 49 c1fi0A_ not modelled 9.8 44 PDB header:viral protein Chain: A: PDB Molecule:vpr protein; PDBTitle: solution structure of hiv-1 vpr (13-33) peptide in micells 50 c3bjrA_ not modelled 9.8 8 PDB header:hydrolase Chain: A: PDB Molecule:putative carboxylesterase; PDBTitle: crystal structure of a putative carboxylesterase (lp_1002) from2 lactobacillus plantarum wcfs1 at 2.09 a resolution 51 d1au7a2 not modelled 9.7 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain 52 c2ejcA_ not modelled 9.4 19 PDB header:ligase Chain: A: PDB Molecule:pantoate--beta-alanine ligase; PDBTitle: crystal structure of pantoate--beta-alanine ligase (panc)2 from thermotoga maritima 53 c3innB_ not modelled 9.3 19 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine-ligase in complex2 with atp at low occupancy at 2.1 a resolution 54 d1o7fa1 not modelled 9.3 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DEP domain 55 c2cu2A_ not modelled 9.1 11 PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8 56 c2hc9A_ not modelled 9.1 13 PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase 1; PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1) 57 c1x5bA_ not modelled 8.9 12 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 58 c3moiA_ not modelled 8.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:probable dehydrogenase; PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50 59 d2hiqa1 not modelled 8.5 16 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Hypothetical protein YdhR 60 c2qytA_ not modelled 8.5 19 PDB header:oxidoreductase Chain: A: PDB Molecule:2-dehydropantoate 2-reductase; PDBTitle: crystal structure of 2-dehydropantoate 2-reductase from porphyromonas2 gingivalis w83 61 c3t38B_ not modelled 8.4 7 PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1' 62 c3dapB_ not modelled 8.2 17 PDB header:oxidoreductase Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase; PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline 63 d1gtra2 not modelled 8.0 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 64 d1f06a1 not modelled 7.9 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 65 c1lw7A_ not modelled 7.6 13 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae 66 c3ag5A_ not modelled 7.6 31 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantothenate synthetase from staphylococcus2 aureus 67 c2hz7A_ not modelled 7.5 15 PDB header:ligase Chain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of the glutaminyl-trna synthetase from2 deinococcus radiodurans 68 c2k2iB_ not modelled 7.4 55 PDB header:cell cycle Chain: B: PDB Molecule:sfi1 peptide; PDBTitle: nmr solution structure of the c-terminal domain (t94-y172)2 of the human centrin 2 in complex with a repeat sequence of3 human sfi1 (r641-t660) 69 d1hcia1 not modelled 7.3 21 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 70 d1zh8a1 not modelled 7.3 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 71 c1iq5B_ not modelled 7.3 67 PDB header:metal binding protein/protein binding Chain: B: PDB Molecule:ca2+/calmodulin dependent kinase kinase; PDBTitle: calmodulin/nematode ca2+/calmodulin dependent kinase kinase2 fragment 72 d1f0xa1 not modelled 7.2 50 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:D-lactate dehydrogenase 73 c3b20R_ not modelled 7.1 15 PDB header:oxidoreductase Chain: R: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase (nadp+); PDBTitle: crystal structure analysis of dehydrogenase complexed with nad 74 c1u2jC_ not modelled 6.9 29 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxidase/catalase hpi; PDBTitle: crystal structure of the c-terminal domain from the2 catalase-peroxidase katg of escherichia coli (p21 21 21) 75 c3jruB_ not modelled 6.7 13 PDB header:hydrolase Chain: B: PDB Molecule:probable cytosol aminopeptidase; PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331 76 d1u2ka_ not modelled 6.7 29 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 77 c3r24A_ not modelled 6.6 37 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 78 c3dwlG_ not modelled 6.6 10 PDB header:structural protein Chain: G: PDB Molecule:actin-related protein 2/3 complex subunit 5; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 79 c2rkhA_ not modelled 6.6 24 PDB header:transcription Chain: A: PDB Molecule:putative apha-like transcription factor; PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution 80 c3euhB_ not modelled 6.6 15 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex 81 c3tsuA_ not modelled 6.5 29 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 82 d1m9fd_ not modelled 6.5 25 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 83 c3hn2A_ not modelled 6.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:2-dehydropantoate 2-reductase; PDBTitle: crystal structure of 2-dehydropantoate 2-reductase from geobacter2 metallireducens gs-15 84 c3ghyA_ not modelled 6.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2 85 d1ebfa1 not modelled 6.4 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 86 d2a84a1 not modelled 6.3 27 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 87 c3ij3A_ not modelled 6.3 18 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii 88 c1s6cB_ not modelled 6.2 38 PDB header:transport protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily d member 2; PDBTitle: crystal structure of the complex between kchip1 and kv4.2 n1-30 89 c2gzdC_ not modelled 6.2 33 PDB header:protein transport Chain: C: PDB Molecule:rab11 family-interacting protein 2; PDBTitle: crystal structure of rab11 in complex with rab11-fip2 90 d1ekxa2 not modelled 6.2 16 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 91 d2pxrc1 not modelled 6.2 25 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 92 d1mbsa_ not modelled 6.1 11 Fold:Globin-like Superfamily:Globin-like Family:Globins 93 d1mrza2 not modelled 6.0 28 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 94 c2h8oA_ not modelled 6.0 19 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: the 1.6a crystal structure of the geranyltransferase from2 agrobacterium tumefaciens 95 c2q4eB_ not modelled 6.0 11 PDB header:oxidoreductase Chain: B: PDB Molecule:probable oxidoreductase at4g09670; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670 96 c1r0lD_ not modelled 6.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph 97 c2x5sB_ not modelled 6.0 8 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 98 d1ccda_ not modelled 6.0 25 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 99 d1r6ea_ not modelled 5.9 21 Fold:SopE-like GEF domain Superfamily:SopE-like GEF domain Family:SopE-like GEF domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0