Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	K	Y	A	L	V	G	D	V	G	G	T	N	A	R	L	A	L	C	D	I	A	S	G	E	I	S	Q	A	K	T	Y	S	G	L	D	Y	P	S	L	E	A	V	I	R	V	Y	L	E	E	H	K	V	E	V	K	D	G	C
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	I	A	C	P	I	T	G	D	W	V	A	M	T	N	H	T	W	A	F	S	I	A	E	M	K	K	N	L	G	F	S	H	L	E	I	I	N	D	F	T	A	V	S	M	A	I	P	M	L	K	K	E	H	L	I	Q	F	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	A	E	P	V	E	G	K	P	I	A	V	Y	G	A	G	T	G	L	G	V	A	H	L	V	H	V	D	K	R	W	V	S	L	P	G	E	G	G	H	V	D	F	A	P	N	S	E	E	E	A	I	I	L	E	I	L	R	A	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	G	H	V	S	A	E	R	V	L	S	G	P	G	L	V	N	L	Y	R	A	I	V	K	A	D	N	R	L	P	E	N	L	K	P	K	D	I	T	E	R	A	L	A	D	S	C	T	D	C	R	R	A	L	S	L	F	C	V	I
Secondary structure
SS confidence
Disorder																												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	G	R	F	G	G	N	L	A	L	N	L	G	T	F	G	G	V	F	I	A	G	G	I	V	P	R	F	L	E	F	F	K	A	S	G	F	R	A	A	F	E	D	K	G	R	F	K	E	Y	V	H	D	I	P	V	Y	L	I	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Sequence		H	D	N	P	G	L	L	G	S	G	A	H	L	R	Q	T	L	G	H	I	L
Secondary structure
SS confidence
Disorder																				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sz2 chain A domain 1 Region: 3 - 321 Aligned: 319 Modelled: 319 Confidence: 100.0% Identity: 98% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Glucokinase Phyre2 PDB 2q2r chain A Region: 2 - 316 Aligned: 309 Modelled: 315 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp Phyre2 PDB 3mcp chain A Region: 2 - 317 Aligned: 291 Modelled: 307 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution Phyre2 PDB 1z6r chain C Region: 3 - 319 Aligned: 297 Modelled: 305 Confidence: 100.0% Identity: 14% PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli Phyre2 PDB 1z05 chain A Region: 4 - 321 Aligned: 297 Modelled: 310 Confidence: 100.0% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Phyre2 PDB 3vgk chain B Region: 4 - 315 Aligned: 293 Modelled: 312 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus Phyre2 PDB 2ap1 chain A Region: 2 - 315 Aligned: 293 Modelled: 304 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein Phyre2 PDB 3r8e chain A Region: 4 - 315 Aligned: 288 Modelled: 291 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution Phyre2 PDB 2qm1 chain D Region: 2 - 316 Aligned: 295 Modelled: 299 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis Phyre2 PDB 2aa4 chain B Region: 1 - 315 Aligned: 280 Modelled: 305 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium Phyre2 PDB 1q18 chain A domain 2 Region: 113 - 321 Aligned: 209 Modelled: 209 Confidence: 100.0% Identity: 100% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Glucokinase Phyre2 PDB 2gup chain A Region: 5 - 317 Aligned: 278 Modelled: 300 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose Phyre2 PDB 1xc3 chain A Region: 4 - 317 Aligned: 274 Modelled: 285 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis Phyre2 PDB 2hoe chain A Region: 4 - 317 Aligned: 271 Modelled: 296 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution Phyre2 PDB 3eo3 chain B Region: 2 - 316 Aligned: 280 Modelled: 291 Confidence: 100.0% Identity: 18% PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein Phyre2 PDB 2ch5 chain D Region: 1 - 321 Aligned: 289 Modelled: 309 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine Phyre2 PDB 3htv chain A Region: 2 - 317 Aligned: 262 Modelled: 287 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution Phyre2 PDB 2e2p chain A Region: 1 - 319 Aligned: 286 Modelled: 304 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp Phyre2 PDB 3lm2 chain B Region: 2 - 316 Aligned: 215 Modelled: 234 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution Phyre2 PDB 1zc6 chain A Region: 1 - 314 Aligned: 277 Modelled: 292 Confidence: 100.0% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. Phyre2 1 d1sz2a1 2 c2q2rA_ 3 c3mcpA_ 4 c1z6rC_ 5 c1z05A_ 6 c3vgkB_ 7 c2ap1A_ 8 c3r8eA_ 9 c2qm1D_ 10 c2aa4B_ 11 d1q18a2 12 c2gupA_ 13 c1xc3A_ 14 c2hoeA_ 15 c3eo3B_ 16 c2ch5D_ 17 c3htvA_ 18 c2e2pA_ 19 c3lm2B_ 20 c1zc6A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1sz2a1 100.0 98 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 2 c2q2rA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 3 c3mcpA_ 100.0 13 PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution 4 c1z6rC_ 100.0 14 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 5 c1z05A_ 100.0 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 6 c3vgkB_ 100.0 16 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 7 c2ap1A_ 100.0 13 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 8 c3r8eA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 9 c2qm1D_ 100.0 16 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 10 c2aa4B_ 100.0 16 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 11 d1q18a2 100.0 100 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 12 c2gupA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 13 c1xc3A_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 14 c2hoeA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 15 c3eo3B_ 100.0 18 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 16 c2ch5D_ 100.0 13 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 17 c3htvA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 18 c2e2pA_ 100.0 13 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 19 c3lm2B_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution 20 c1zc6A_ 100.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 21 c1woqB_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution 22 d1z05a2 not modelled 100.0 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 23 d1z6ra3 not modelled 100.0 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 24 d2ap1a1 not modelled 99.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 25 d2aa4a2 not modelled 99.9 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 26 d1q18a1 not modelled 99.9 96 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 27 d2gupa2 not modelled 99.9 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 28 d1xc3a2 not modelled 99.9 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 29 d2hoea2 not modelled 99.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 30 c1zbsA_ not modelled 99.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 31 c1zxoB_ not modelled 99.8 10 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 32 d2aa4a1 not modelled 99.8 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 33 d1huxa_ not modelled 99.8 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 34 d2gupa1 not modelled 99.8 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 35 d1woqa2 not modelled 99.8 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 36 d2ewsa1 not modelled 99.7 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 37 d1woqa1 not modelled 99.7 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 38 d2hoea3 not modelled 99.7 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 39 d2ch5a1 not modelled 99.7 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 40 d1z6ra2 not modelled 99.7 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 41 d1z05a3 not modelled 99.7 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 42 d2ap1a2 not modelled 99.7 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 43 d2ch5a2 not modelled 99.6 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 44 d1xc3a1 not modelled 99.6 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 45 c3hm8D_ not modelled 99.5 19 PDB header:transferase Chain: D: PDB Molecule:hexokinase-3; PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3 46 d1zc6a1 not modelled 99.5 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 47 c1bdgA_ not modelled 99.5 17 PDB header:hexokinase Chain: A: PDB Molecule:hexokinase; PDBTitle: hexokinase from schistosoma mansoni complexed with glucose 48 c1v4sA_ not modelled 99.4 17 PDB header:transferase Chain: A: PDB Molecule:glucokinase isoform 2; PDBTitle: crystal structure of human glucokinase 49 c1ig8A_ not modelled 99.4 17 PDB header:transferase Chain: A: PDB Molecule:hexokinase pii; PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence 50 c1qhaA_ not modelled 99.3 17 PDB header:transferase Chain: A: PDB Molecule:protein (hexokinase); PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp 51 c3h1qB_ not modelled 98.9 19 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 52 d1zc6a2 not modelled 98.8 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 53 c3p4iA_ not modelled 98.7 14 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 54 c3gg4B_ not modelled 98.6 22 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 55 c3hz6A_ not modelled 98.5 17 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 56 c2zf5O_ not modelled 98.5 18 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 57 c3i8bA_ not modelled 98.5 11 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 58 c2iirJ_ not modelled 98.5 15 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 59 c3gbtA_ not modelled 98.4 17 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 60 c1sazA_ not modelled 98.4 16 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 61 c2d4wA_ not modelled 98.3 17 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 62 c3ifrB_ not modelled 98.3 14 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 63 c3flcX_ not modelled 98.3 19 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 64 c1x3nA_ not modelled 98.3 13 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 65 c3h6eB_ not modelled 98.3 20 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans 66 c3g25B_ not modelled 98.3 22 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 67 c2dpnB_ not modelled 98.3 23 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 68 d2p3ra1 not modelled 98.2 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 69 c1glbG_ not modelled 98.2 19 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 70 c1tuuA_ not modelled 98.2 16 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 71 c3ezwD_ not modelled 98.2 19 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 72 c3jvpA_ not modelled 98.1 20 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 73 c3khyA_ not modelled 98.1 14 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 74 c2w40C_ not modelled 98.0 17 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 75 d1bg3a1 not modelled 97.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 76 d1czan3 not modelled 97.8 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 77 d1bg3a3 not modelled 97.8 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 78 d1bdga1 not modelled 97.8 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 79 c2nlxA_ not modelled 97.8 13 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 80 c3enoB_ not modelled 97.8 14 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 81 c1xupO_ not modelled 97.7 14 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 82 d1v4sa1 not modelled 97.7 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 83 c2cgkB_ not modelled 97.7 22 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 84 d1g99a2 not modelled 97.7 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 85 d1saza2 not modelled 97.6 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 86 d1czan1 not modelled 97.6 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 87 d1zbsa1 not modelled 97.6 8 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 88 d2e1za2 not modelled 97.5 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 89 d1ig8a1 not modelled 97.4 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 90 c2i7pA_ not modelled 97.4 17 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 91 c3bf1C_ not modelled 97.3 20 PDB header:transferase Chain: C: PDB Molecule:type iii pantothenate kinase; PDBTitle: type iii pantothenate kinase from thermotoga maritima2 complexed with pantothenate and adp 92 d1r59o1 not modelled 97.3 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 93 c2v7yA_ not modelled 97.1 17 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 94 c2ychA_ not modelled 96.9 18 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 95 d3bexa1 not modelled 96.9 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 96 d1czan2 not modelled 96.9 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 97 d1zxoa2 not modelled 96.8 8 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 98 d3bzka5 not modelled 96.7 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 99 d1zbsa2 not modelled 96.1 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 100 d1nu0a_ not modelled 95.9 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 101 c3smpA_ not modelled 95.8 14 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha 102 d1bg3a4 not modelled 95.4 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 103 d1v4sa2 not modelled 95.4 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 104 d1bdga2 not modelled 95.3 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 105 d1iv0a_ not modelled 95.2 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 106 d1bg3a2 not modelled 95.2 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 107 d1czan4 not modelled 95.1 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 108 d1e4ft1 not modelled 95.1 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 109 c2ivoC_ not modelled 94.7 11 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 110 d1ig8a2 not modelled 94.7 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 111 c3djcA_ not modelled 94.5 14 PDB header:transferase Chain: A: PDB Molecule:type iii pantothenate kinase; PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila 112 c2h3gX_ not modelled 94.5 22 PDB header:biosynthetic protein Chain: X: PDB Molecule:biosynthetic protein; PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis 113 d2f9wa2 not modelled 93.9 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 114 d1vhxa_ not modelled 93.8 9 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 115 c3t69A_ not modelled 92.9 13 PDB header:transferase Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase; PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti 116 c2f9tB_ not modelled 92.3 14 PDB header:transferase Chain: B: PDB Molecule:pantothenate kinase; PDBTitle: structure of the type iii coaa from pseudomonas aeruginosa 117 c2oceA_ not modelled 91.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 118 c1e4gT_ not modelled 91.0 18 PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima 119 d2p3ra2 not modelled 89.2 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 120 c3en9B_ not modelled 87.9 11 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0