Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	K	N	T	L	L	A	S	A	L	L	S	A	M	A	F	S	V	N	A	A	T	E	L	T	P	E	Q	A	A	A	V	K	P	F	D	R	V	V	V	T	G	R	F	N	A	I	G	E	A	V	K	A	V	S	R	R	A
Secondary structure
SS confidence
Disorder		?	?	?	?												?	?	?	?		?		?	?								?	?	?	?								?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	K	E	G	A	A	S	F	Y	V	V	D	T	S	D	F	G	N	S	G	N	W	R	V	V	A	D	L	Y	K	A	D	A	E	K	A	E	E	T	S	N	R	V	I	N	G	V	V	E	L	P	K	D	Q	A	V	L	I	E	P
Secondary structure
SS confidence
Disorder				?	?	?										?	?	?	?	?	?	?															?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	D	T	V	T	V	Q	G	F	Y	R	S	Q	P	E	V	N	D	A	I	T	K	A	A	K	A	K	G	A	Y	S	F	Y	I	V	R	Q	I	D	A	N	Q	G	G	N	Q	R	I	T	A	F	I	Y	K	K	D	A	K	K	R
Secondary structure
SS confidence
Disorder																									?	?															?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	V	Q	S	P	D	V	I	P	A	D	S	E	A	G	R	A	A	L	A	A	G	G	E	A	A	K	K	V	E	I	P	G	V	A	T	T	A	S	P	S	S	E	V	G	R	F	F	E	T	Q	S	S	K	G	G	R	Y	T	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?	?	?					?					?	?	?	?	?	?	?						?		?	?	?	?	?	?	?	?									?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	L	P	D	G	T	K	V	E	E	L	N	K	A	T	A	A	M	M	V	P	F	D	S	I	K	F	S	G	N	Y	G	N	M	T	E	V	S	Y	Q	V	A	K	R	A	A	K	K	G	A	K	Y	Y	H	I	T	R	Q	W	Q
Secondary structure
SS confidence
Disorder									?			?					?																														?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.
Sequence		E	R	G	N	N	L	T	V	S	A	D	L	Y	K
Secondary structure
SS confidence
Disorder			?	?	?	?					?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jna chain A domain 1 Region: 1 - 95 Aligned: 91 Modelled: 95 Confidence: 99.9% Identity: 25% Fold: Dodecin subunit-like Superfamily: YdgH-like Family: YdgH-like Phyre2 PDB 2noc chain A domain 1 Region: 1 - 91 Aligned: 86 Modelled: 91 Confidence: 99.9% Identity: 22% Fold: Dodecin subunit-like Superfamily: YdgH-like Family: YdgH-like Phyre2 PDB 3kd4 chain A Region: 237 - 268 Aligned: 31 Modelled: 32 Confidence: 32.6% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution Phyre2 PDB 2k4q chain A Region: 16 - 71 Aligned: 55 Modelled: 56 Confidence: 28.8% Identity: 13% PDB header:viral protein Chain: A: PDB Molecule:major tail protein v; PDBTitle: the solution structure of gpv, the major tail protein from2 bacteriophage lambda Phyre2 PDB 2jz5 chain A Region: 122 - 183 Aligned: 60 Modelled: 62 Confidence: 28.7% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vpa0419; PDBTitle: nmr solution structure of protein vpa0419 from vibrio2 parahaemolyticus. northeast structural genomics target3 vpr68 Phyre2 PDB 2xzn chain Z Region: 116 - 148 Aligned: 33 Modelled: 33 Confidence: 26.0% Identity: 21% PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Phyre2 PDB 3k3n chain A Region: 261 - 292 Aligned: 32 Modelled: 32 Confidence: 25.7% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 Phyre2 PDB 2wkd chain A Region: 118 - 128 Aligned: 11 Modelled: 11 Confidence: 22.7% Identity: 64% PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 Phyre2 PDB 3kv4 chain A Region: 239 - 281 Aligned: 35 Modelled: 43 Confidence: 22.3% Identity: 31% PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 Phyre2 PDB 2k38 chain A Region: 277 - 292 Aligned: 16 Modelled: 16 Confidence: 20.4% Identity: 69% PDB header:antimicrobial protein Chain: A: PDB Molecule:cupiennin-1a; PDBTitle: cupiennin 1a, nmr, minimized average structure Phyre2 PDB 2qaz chain C Region: 226 - 266 Aligned: 33 Modelled: 40 Confidence: 18.7% Identity: 21% PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog Phyre2 PDB 2khd chain A Region: 122 - 183 Aligned: 62 Modelled: 62 Confidence: 18.0% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vc_a0919; PDBTitle: solution nmr structure of vc_a0919 from vibrio cholerae.2 northeast structural genomics consortium target vcr52 Phyre2 PDB 2y1b chain A Region: 23 - 72 Aligned: 47 Modelled: 50 Confidence: 17.4% Identity: 21% PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein, signal; PDBTitle: crystal structure of the e. coli outer membrane lipoprotein2 rcsf Phyre2 PDB 1ft8 chain A domain 2 Region: 238 - 268 Aligned: 31 Modelled: 31 Confidence: 17.4% Identity: 32% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Non-canonical RBD domain Phyre2 PDB 2g39 chain A domain 1 Region: 26 - 64 Aligned: 39 Modelled: 38 Confidence: 15.3% Identity: 21% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 2i9f chain A domain 1 Region: 218 - 249 Aligned: 32 Modelled: 31 Confidence: 15.1% Identity: 38% Fold: Nucleocapsid protein dimerization domain Superfamily: Nucleocapsid protein dimerization domain Family: Arterivirus nucleocapsid protein Phyre2 PDB 2bba chain A domain 1 Region: 61 - 96 Aligned: 36 Modelled: 36 Confidence: 15.0% Identity: 17% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: Ephrin receptor ligand binding domain Phyre2 PDB 3b9n chain B Region: 45 - 71 Aligned: 27 Modelled: 27 Confidence: 15.0% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) Phyre2 PDB 2zfg chain A domain 1 Region: 86 - 97 Aligned: 12 Modelled: 12 Confidence: 14.4% Identity: 33% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 2qas chain A Region: 226 - 266 Aligned: 33 Modelled: 41 Confidence: 14.4% Identity: 21% PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog Phyre2 1 d2jnaa1 2 d2noca1 3 c3kd4A_ 4 c2k4qA_ 5 c2jz5A_ 6 c2xznZ_ 7 c3k3nA_ 8 c2wkdA_ 9 c3kv4A_ 10 c2k38A_ 11 c2qazC_ 12 c2khdA_ 13 c2y1bA_ 14 d1ft8a2 15 d2g39a1 16 d2i9fa1 17 d2bbaa1 18 c3b9nB_ 19 d2zfga1 20 c2qasA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2jnaa1 99.9 25 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 2 d2noca1 99.9 22 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 3 c3kd4A_ 32.6 26 PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution 4 c2k4qA_ 28.8 13 PDB header:viral protein Chain: A: PDB Molecule:major tail protein v; PDBTitle: the solution structure of gpv, the major tail protein from2 bacteriophage lambda 5 c2jz5A_ 28.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vpa0419; PDBTitle: nmr solution structure of protein vpa0419 from vibrio2 parahaemolyticus. northeast structural genomics target3 vpr68 6 c2xznZ_ 26.0 21 PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 7 c3k3nA_ 25.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 8 c2wkdA_ 22.7 64 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 9 c3kv4A_ 22.3 31 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 10 c2k38A_ 20.4 69 PDB header:antimicrobial protein Chain: A: PDB Molecule:cupiennin-1a; PDBTitle: cupiennin 1a, nmr, minimized average structure 11 c2qazC_ 18.7 21 PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog 12 c2khdA_ 18.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vc_a0919; PDBTitle: solution nmr structure of vc_a0919 from vibrio cholerae.2 northeast structural genomics consortium target vcr52 13 c2y1bA_ 17.4 21 PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein, signal; PDBTitle: crystal structure of the e. coli outer membrane lipoprotein2 rcsf 14 d1ft8a2 17.4 32 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Non-canonical RBD domain 15 d2g39a1 15.3 21 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 16 d2i9fa1 15.1 38 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein 17 d2bbaa1 15.0 17 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Ephrin receptor ligand binding domain 18 c3b9nB_ 15.0 11 PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) 19 d2zfga1 14.4 33 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 20 c2qasA_ 14.4 21 PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog 21 d2nysa1 not modelled 14.1 21 Fold:SspB-like Superfamily:SspB-like Family:AGR C 3712p-like 22 c2nysA_ not modelled 14.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:agr_c_3712p; PDBTitle: x-ray crystal structure of protein agr_c_3712 from2 agrobacterium tumefaciens. northeast structural genomics3 consortium target atr88. 23 c2gjhA_ not modelled 13.4 36 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 24 d1gqpa_ not modelled 13.1 5 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:APC10-like 25 c3n9mC_ not modelled 12.7 34 PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone 26 c3p56F_ not modelled 12.2 27 PDB header:hydrolase/replication Chain: F: PDB Molecule:ribonuclease h2 subunit c; PDBTitle: the structure of the human rnase h2 complex defines key interaction2 interfaces relevant to enzyme function and human disease 27 c3izbT_ not modelled 12.1 29 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein rps21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 28 c2ebuA_ not modelled 11.7 15 PDB header:replication Chain: A: PDB Molecule:replication factor c subunit 1; PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1 29 c2w6rA_ not modelled 11.6 12 PDB header:lyase Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels 30 d1lucb_ not modelled 11.3 15 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 31 c2kgyA_ not modelled 11.3 62 PDB header:immune system Chain: A: PDB Molecule:possible exported protein; PDBTitle: solution structure of rv0603 protein from mycobacterium2 tuberculosis h37rv 32 c2ov7C_ not modelled 11.1 38 PDB header:ribosomal protein Chain: C: PDB Molecule:50s ribosomal protein l1; PDBTitle: the first domain of the ribosomal protein l1 from thermus2 thermophilus 33 d1x94a_ not modelled 11.0 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 34 c2w62A_ not modelled 11.0 10 PDB header:transferase Chain: A: PDB Molecule:glycolipid-anchored surface protein 2; PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose 35 d1koha2 not modelled 10.8 29 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Non-canonical RBD domain 36 c3hjaB_ not modelled 10.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi 37 c3iz6T_ not modelled 10.8 28 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 38 c3ir9A_ not modelled 10.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 39 c2xznB_ not modelled 10.6 18 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 40 d1cida1 not modelled 10.5 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 41 d1itpa_ not modelled 10.5 15 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 42 c1wwtA_ not modelled 10.4 42 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 43 c3no4A_ not modelled 10.3 18 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 44 d1a8ya2 not modelled 10.0 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Calsequestrin 45 c3i4oA_ not modelled 9.9 21 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 46 c2f9jP_ not modelled 9.8 57 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 47 d1ah9a_ not modelled 9.7 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 d1js2a_ not modelled 9.6 36 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 49 c3pu3A_ not modelled 9.5 29 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 50 c2c7hA_ not modelled 9.5 24 PDB header:ubiquitin-like protein Chain: A: PDB Molecule:retinoblastoma-binding protein 6, isoform 3; PDBTitle: solution nmr structure of the dwnn domain from human rbbp6 51 c3a9lB_ not modelled 9.5 12 PDB header:hydrolase Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase; PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase 52 d1hr0w_ not modelled 9.5 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 c3na2C_ not modelled 9.3 41 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 54 c3kvaA_ not modelled 9.2 24 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 55 d2qi2a3 not modelled 9.1 17 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 56 d1o9aa1 not modelled 9.1 39 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 57 d1b0ya_ not modelled 9.1 36 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 58 d1phoa_ not modelled 9.1 33 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 59 c2k3iA_ not modelled 9.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yiis; PDBTitle: solution nmr structure of protein yiis from shigella2 flexneri. northeast structural genomics consortium target3 sfr90 60 c2k3mA_ not modelled 9.1 63 PDB header:membrane protein Chain: A: PDB Molecule:rv1761c; PDBTitle: rv1761c 61 c2yu1A_ not modelled 9.1 29 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 62 c3nsgA_ not modelled 9.1 27 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 63 c3lubE_ not modelled 8.8 8 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 64 c2i2xD_ not modelled 8.7 14 PDB header:transferase Chain: D: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 65 d1iuaa_ not modelled 8.7 38 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 66 d1l7ba_ not modelled 8.5 19 Fold:BRCT domain Superfamily:BRCT domain Family:DNA ligase 67 c2qruA_ not modelled 8.4 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an alpha/beta hydrolase superfamily protein from2 enterococcus faecalis 68 d1tg7a4 not modelled 8.2 20 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Beta-galactosidase LacA, domain 2 69 c3rj1S_ not modelled 8.2 15 PDB header:transcription Chain: S: PDB Molecule:mediator of rna polymerase ii transcription subunit 18; PDBTitle: architecture of the mediator head module 70 c2j58G_ not modelled 8.2 16 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 71 c1fybA_ not modelled 8.2 56 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:proteinase inhibitor; PDBTitle: solution structure of c1-t1, a two-domain proteinase2 inhibitor derived from the circular precursor protein na-3 propi from nicotiana alata 72 d3elga1 not modelled 8.1 38 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 73 c3sdoB_ not modelled 7.9 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei 74 c2hzsH_ not modelled 7.8 17 PDB header:transcription Chain: H: PDB Molecule:rna polymerase ii mediator complex subunit 18; PDBTitle: structure of the mediator head submodule med8c/18/20 75 d1eaka1 not modelled 7.7 12 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 76 d1luca_ not modelled 7.6 10 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 77 c2ixsB_ not modelled 7.6 15 PDB header:hydrolase Chain: B: PDB Molecule:sdai restriction endonuclease; PDBTitle: structure of sdai restriction endonuclease 78 c3kioC_ not modelled 7.4 24 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease h2 subunit c; PDBTitle: mouse rnase h2 complex 79 d1osma_ not modelled 7.3 33 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 80 c3g7dA_ not modelled 7.2 44 PDB header:biosynthetic protein Chain: A: PDB Molecule:phpd; PDBTitle: native phpd with cadmium atoms 81 d1nyra2 not modelled 7.1 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 82 d1tiha_ not modelled 6.9 56 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 83 d1hlqa_ not modelled 6.8 46 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 84 d2nsfa2 not modelled 6.8 44 Fold:SCP-like Superfamily:SCP-like Family:Micothiol-dependent maleylpyruvate isomerase C-terminal domain-like 85 c2wgkA_ not modelled 6.7 9 PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida 86 c3ckhA_ not modelled 6.6 25 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 4; PDBTitle: crystal structure of eph a4 receptor 87 c2dqlA_ not modelled 6.6 27 PDB header:circadian clock protein Chain: A: PDB Molecule:pex protein; PDBTitle: crytal structure of the circadian clock associated protein2 pex from anabaena 88 d1wmxb_ not modelled 6.5 29 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat) 89 c2ke0A_ not modelled 6.5 23 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 90 d1v5ib1 not modelled 6.5 11 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 91 c2xhzC_ not modelled 6.4 13 PDB header:isomerase Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography 92 c1oy8A_ not modelled 6.4 10 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 93 c2fl8N_ not modelled 6.3 34 PDB header:virus/viral protein Chain: N: PDB Molecule:baseplate structural protein gp10; PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation. 94 d1fyba1 not modelled 6.2 56 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 95 c3e20C_ not modelled 6.2 14 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 96 d1bjxa_ not modelled 6.2 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 97 d2al6a3 not modelled 6.1 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 98 d1tkea1 not modelled 6.1 45 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 99 c2qbxB_ not modelled 5.9 32 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-b receptor 2; PDBTitle: ephb2/snew antagonistic peptide complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0