PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2hzsH_

Fold library id	PDB Header	Molecule	Title
c2hzsH_	PDB header: transcription	Chain: H: PDB Molecule: rna polymerase ii mediator complex subunit 18;	PDBTitle: structure of the mediator head submodule med8c/18/20

Links to external resources
Added to library: Tue Mar 16 12:04:18 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V Q Q L S L F G S I G D D G Y D L L I S T L T T I S G N P P L L Y N S L C T V W K P N P S Y D V E N V N S R N Q L V E P N R I K L S K E V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S S
S S S
S B
S S S
B
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F S Y L I D E T M M D K P L N F R I S C S P W S L Q I S D I P A A G N N R S V S M Q T I A E T I I L S S A G K N S S V S S L M N G L G Y V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T G G G S S T T
T T
S S
S S S
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E F Q Y L T I G V K F F M K H G L I L E L Q K I W Q I E E A G N S Q I T S G G F L L K A Y I N V S R G T D I D R I N Y T E T V L M N L K K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
B T T B
B T T T T S S S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence L Q G Y I E L S V P D R Q S M D S R V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
B
G G G G
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	Q	Q	L	S	L	F	G	S	I	G	D	D	G	Y	D	L	L	I	S	T	L	T	T	I	S	G	N	P	P	L	L	Y	N	S	L	C	T	V	W	K	P	N	P	S	Y	D	V	E	N	V	N	S	R	N	Q	L	V	E	P	N	R	I	K	L	S	K	E	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												G	G	G													S	S																S	S	S				S	B		S	S	S		B				B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	S	Y	L	I	D	E	T	M	M	D	K	P	L	N	F	R	I	S	C	S	P	W	S	L	Q	I	S	D	I	P	A	A	G	N	N	R	S	V	S	M	Q	T	I	A	E	T	I	I	L	S	S	A	G	K	N	S	S	V	S	S	L	M	N	G	L	G	Y	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G					T	G	G	G	S	S	T	T																				T	T		S	S															S	S	S		S								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	F	Q	Y	L	T	I	G	V	K	F	F	M	K	H	G	L	I	L	E	L	Q	K	I	W	Q	I	E	E	A	G	N	S	Q	I	T	S	G	G	F	L	L	K	A	Y	I	N	V	S	R	G	T	D	I	D	R	I	N	Y	T	E	T	V	L	M	N	L	K	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G												B	T	T	B			B	T	T	T	T											S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	L	Q	G	Y	I	E	L	S	V	P	D	R	Q	S	M	D	S	R	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S			B				G	G	G	G			B