Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AF20
DateThu Jan 5 11:24:56 GMT 2012
Unique Job IDe0332f2f8b48ea3b

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1z05A_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
Confidence and coverage
Confidence:100.0% Coverage: 97%
393 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG
Secondary structure 




















SS confidence 



























































Disorder  ???????????






























???














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   .........70.........80.........90.........100.........110.........120
Sequence  LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER
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Disorder 




??????????












































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   .........130.........140.........150.........160.........170.........180
Sequence  TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE
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?





































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   .........190.........200.........210.........220.........230.........240
Sequence  ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG
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   .........250.........260.........270.........280.........290.........300
Sequence  NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI
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?????????????





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   .........310.........320.........330.........340.........350.........360
Sequence  CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN
Secondary structure 







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   .........370.........380.........390.........400......
Sequence  TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN
Secondary structure 












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Disorder 










































???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1z05 chain A

3D model

Region: 13 - 405
Aligned: 393
Modelled: 393
Confidence: 100.0%
Identity: 43%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.

Phyre2

PDB 1z6r chain C

3D model

Region: 14 - 405
Aligned: 380
Modelled: 392
Confidence: 100.0%
Identity: 41%
PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli

Phyre2

PDB 2hoe chain A

3D model

Region: 23 - 396
Aligned: 344
Modelled: 354
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution

Phyre2

PDB 3mcp chain A

3D model

Region: 81 - 403
Aligned: 303
Modelled: 323
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution

Phyre2

PDB 2qm1 chain D

3D model

Region: 82 - 393
Aligned: 312
Modelled: 309
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis

Phyre2

PDB 3vgk chain B

3D model

Region: 86 - 392
Aligned: 301
Modelled: 307
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus

Phyre2

PDB 2ap1 chain A

3D model

Region: 86 - 393
Aligned: 293
Modelled: 308
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein

Phyre2

PDB 3r8e chain A

3D model

Region: 86 - 392
Aligned: 297
Modelled: 307
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution

Phyre2

PDB 3eo3 chain B

3D model

Region: 87 - 393
Aligned: 280
Modelled: 285
Confidence: 100.0%
Identity: 22%
PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein

Phyre2

PDB 2aa4 chain B

3D model

Region: 88 - 393
Aligned: 284
Modelled: 296
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium

Phyre2

PDB 1xc3 chain A

3D model

Region: 87 - 394
Aligned: 274
Modelled: 285
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis

Phyre2

PDB 3htv chain A

3D model

Region: 83 - 395
Aligned: 273
Modelled: 292
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution

Phyre2

PDB 2gup chain A

3D model

Region: 88 - 393
Aligned: 280
Modelled: 306
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose

Phyre2

PDB 1sz2 chain A domain 1

3D model

Region: 86 - 394
Aligned: 295
Modelled: 303
Confidence: 100.0%
Identity: 14%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glucokinase

Phyre2

PDB 1woq chain B

3D model

Region: 88 - 393
Aligned: 244
Modelled: 261
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution

Phyre2

PDB 1z6r chain A domain 3

3D model

Region: 211 - 405
Aligned: 195
Modelled: 195
Confidence: 100.0%
Identity: 39%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: ROK

Phyre2

PDB 2q2r chain A

3D model

Region: 81 - 392
Aligned: 302
Modelled: 312
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp

Phyre2

PDB 1z05 chain A domain 2

3D model

Region: 211 - 405
Aligned: 195
Modelled: 195
Confidence: 100.0%
Identity: 46%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: ROK

Phyre2

PDB 2ch5 chain D

3D model

Region: 85 - 394
Aligned: 293
Modelled: 310
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine

Phyre2

PDB 2e2p chain A

3D model

Region: 87 - 404
Aligned: 288
Modelled: 303
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp

Phyre2
1

c1z05A_
2

c1z6rC_
3

c2hoeA_
4

c3mcpA_
5

c2qm1D_
6

c3vgkB_
7

c2ap1A_
8

c3r8eA_
9

c3eo3B_
10

c2aa4B_
11

c1xc3A_
12

c3htvA_
13

c2gupA_
14

d1sz2a1
15

c1woqB_
16

d1z6ra3
17

c2q2rA_
18

d1z05a2
19

c2ch5D_
20

c2e2pA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1z05A_



100.0 43 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
2c1z6rC_



100.0 41 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
3c2hoeA_



100.0 24 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
4c3mcpA_



100.0 20 PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution
5c2qm1D_



100.0 24 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
6c3vgkB_



100.0 25 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
7c2ap1A_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
8c3r8eA_



100.0 21 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
9c3eo3B_



100.0 22 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
10c2aa4B_



100.0 23 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
11c1xc3A_



100.0 21 PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
12c3htvA_



100.0 17 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
13c2gupA_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
14d1sz2a1



100.0 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
15c1woqB_



100.0 21 PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution
16d1z6ra3



100.0 39 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
17c2q2rA_



100.0 12 PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp
18d1z05a2



100.0 46 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
19c2ch5D_



100.0 15 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
20c2e2pA_



100.0 15 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
21c3lm2B_



not modelled 100.0 19 PDB header:transferase
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution
22c1zc6A_



not modelled 100.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
23d2aa4a2



not modelled 100.0 28 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
24d2ap1a1



not modelled 100.0 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
25d2gupa2



not modelled 99.9 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
26d2hoea2



not modelled 99.9 27 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
27d1q18a2



not modelled 99.9 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
28d1xc3a2



not modelled 99.9 25 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
29d2hoea3



not modelled 99.9 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
30d1z05a3



not modelled 99.9 34 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
31d1z6ra2



not modelled 99.9 35 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
32d2ap1a2



not modelled 99.8 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
33d1woqa1



not modelled 99.8 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
34d2aa4a1



not modelled 99.8 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
35d1woqa2



not modelled 99.8 26 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
36c1v4sA_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:glucokinase isoform 2;
PDBTitle: crystal structure of human glucokinase
37d2ch5a1



not modelled 99.7 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
38c1bdgA_



not modelled 99.7 17 PDB header:hexokinase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: hexokinase from schistosoma mansoni complexed with glucose
39c3hm8D_



not modelled 99.7 20 PDB header:transferase
Chain: D: PDB Molecule:hexokinase-3;
PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3
40d1xc3a1



not modelled 99.7 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
41d2ewsa1



not modelled 99.7 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
42c1ig8A_



not modelled 99.7 13 PDB header:transferase
Chain: A: PDB Molecule:hexokinase pii;
PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence
43d1huxa_



not modelled 99.7 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
44d2gupa1



not modelled 99.7 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
45c1qhaA_



not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:protein (hexokinase);
PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp
46d1z05a1



not modelled 99.6 52 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
47c1zbsA_



not modelled 99.6 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg1100;
PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18
48d1z6ra1



not modelled 99.5 53 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
49d1q18a1



not modelled 99.4 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
50c1zxoB_



not modelled 99.4 11 PDB header:unknown function
Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1;
PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25.
51d2ch5a2



not modelled 99.3 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
52d1zc6a1



not modelled 99.3 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
53c3p4iA_



not modelled 98.9 14 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
54c1sazA_



not modelled 98.9 18 PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
55c3h1qB_



not modelled 98.7 15 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
56c3enoB_



not modelled 98.7 13 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
57c2ivoC_



not modelled 98.7 15 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
58c2iirJ_



not modelled 98.7 15 PDB header:transferase
Chain: J: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase from a hypothermophile thermotoga maritima
59c1tuuA_



not modelled 98.7 16 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase crystallized with atpgs
60c3khyA_



not modelled 98.6 16 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4
61d2p3ra1



not modelled 98.6 10 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
62c3flcX_



not modelled 98.6 12 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
63d1v4sa1



not modelled 98.6 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
64c2dpnB_



not modelled 98.6 17 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
65d2p4wa1



not modelled 98.5 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF1790-like
66c3g25B_



not modelled 98.5 12 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
67c3ezwD_



not modelled 98.5 10 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
68c2d4wA_



not modelled 98.5 12 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
69c1glbG_



not modelled 98.5 10 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
70d1bdga1



not modelled 98.4 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
71d1czan3



not modelled 98.4 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
72c3gg4B_



not modelled 98.4 15 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
73d1ig8a1



not modelled 98.4 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
74c1x3nA_



not modelled 98.4 16 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
75c2zf5O_



not modelled 98.4 24 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
76c3ifrB_



not modelled 98.4 15 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
77d1saza2



not modelled 98.3 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
78d1zc6a2



not modelled 98.3 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
79d1ulya_



not modelled 98.3 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Hypothetical protein PH1932
80d1bg3a3



not modelled 98.3 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
81d1czan1



not modelled 98.2 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
82d1g99a2



not modelled 98.2 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
83c3hz6A_



not modelled 98.2 12 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
84d1ub9a_



not modelled 98.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
85d1czan2



not modelled 98.1 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
86d2e1za2



not modelled 98.1 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
87d1bg3a1



not modelled 98.0 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
88c3en9B_



not modelled 98.0 11 PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
89c3bj6B_



not modelled 98.0 12 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
90d2etha1



not modelled 97.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
91c3cuoB_



not modelled 97.9 10 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
92c1xupO_



not modelled 97.9 13 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
93d1sfxa_



not modelled 97.9 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
94d1jgsa_



not modelled 97.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
95c3gbtA_



not modelled 97.9 21 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
96c3g3zA_



not modelled 97.9 22 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
97c3nrvC_



not modelled 97.9 14 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
98d1lnwa_



not modelled 97.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
99c2nlxA_



not modelled 97.9 21 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
100c2qwwB_



not modelled 97.8 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
101d1v4sa2



not modelled 97.8 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
102d2bv6a1



not modelled 97.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
103c2nyxB_



not modelled 97.8 17 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
104d1bg3a4



not modelled 97.8 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
105c3f6vA_



not modelled 97.8 17 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
106c3r0aB_



not modelled 97.8 15 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
107d2fbha1



not modelled 97.8 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
108c2oqgA_



not modelled 97.8 19 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
109c2w40C_



not modelled 97.8 8 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
110d1bg3a2



not modelled 97.8 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
111d2d1ha1



not modelled 97.8 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
112c2qufB_



not modelled 97.8 9 PDB header:transcription
Chain: B: PDB Molecule:transcription factor pf0095;
PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus
113c3k0lA_



not modelled 97.8 20 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
114c3e6mD_



not modelled 97.8 18 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
115c3jvpA_



not modelled 97.8 21 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
116c2fxaB_



not modelled 97.7 16 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
117d2hoea1



not modelled 97.7 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
118d1ku9a_



not modelled 97.7 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
119d1s3ja_



not modelled 97.7 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
120c2fa5B_



not modelled 97.7 20 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0