Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	D	T	H	S	I	A	Q	P	F	E	A	E	V	S	P	A	N	N	R	H	V	T	V	G	Y	A	S	R	Y	P	D	Y	S	R	I	P	A	I	T	L	K	G	Q	W	L	E	A	A	G	F	A	T	G	T	A	V	D	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?				?	?	?	?	?	?	?	?	?	?											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Sequence		K	V	M	E	G	C	I	V	L	T	A	Q	P	P	A	A	E	E	S	E	L	M	Q	S	L	R	Q	V	C	K	L	S	A	R	K	Q	K	Q	V	Q	A	F	I	G	V	I	A	G	K	Q	K	V	A
Secondary structure
SS confidence
Disorder															?	?	?	?	?											?	?	?	?																?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1mvf chain D Region: 39 - 71 Aligned: 33 Modelled: 33 Confidence: 95.1% Identity: 12% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 1ub4 chain C Region: 39 - 83 Aligned: 45 Modelled: 45 Confidence: 89.1% Identity: 16% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 2hde chain A Region: 47 - 76 Aligned: 26 Modelled: 30 Confidence: 59.1% Identity: 23% PDB header:transcription Chain: A: PDB Molecule:histone deacetylase complex subunit sap18; PDBTitle: solution structure of human sap18 Phyre2 PDB 2j0n chain A domain 1 Region: 45 - 111 Aligned: 59 Modelled: 62 Confidence: 46.2% Identity: 20% Fold: IpaD-like Superfamily: IpaD-like Family: IpaD-like Phyre2 PDB 1w44 chain A Region: 65 - 92 Aligned: 28 Modelled: 28 Confidence: 37.7% Identity: 14% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 3mhx chain B Region: 45 - 72 Aligned: 28 Modelled: 27 Confidence: 37.4% Identity: 18% PDB header:metal transport Chain: B: PDB Molecule:putative ferrous iron transport protein a; PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor Phyre2 PDB 2dky chain A domain 1 Region: 45 - 53 Aligned: 9 Modelled: 9 Confidence: 29.7% Identity: 56% Fold: SAM domain-like Superfamily: SAM/Pointed domain Family: Variant SAM domain Phyre2 PDB 2jpi chain A Region: 52 - 88 Aligned: 33 Modelled: 37 Confidence: 28.6% Identity: 9% PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa Phyre2 PDB 1hn0 chain A domain 3 Region: 39 - 71 Aligned: 30 Modelled: 33 Confidence: 27.5% Identity: 27% Fold: Hyaluronate lyase-like, C-terminal domain Superfamily: Hyaluronate lyase-like, C-terminal domain Family: Hyaluronate lyase-like, C-terminal domain Phyre2 PDB 2l66 chain B Region: 35 - 69 Aligned: 35 Modelled: 35 Confidence: 27.1% Identity: 23% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. Phyre2 PDB 2h80 chain A domain 1 Region: 45 - 52 Aligned: 8 Modelled: 8 Confidence: 26.7% Identity: 75% Fold: SAM domain-like Superfamily: SAM/Pointed domain Family: Variant SAM domain Phyre2 PDB 1rij chain A Region: 42 - 57 Aligned: 16 Modelled: 16 Confidence: 26.1% Identity: 44% PDB header:de novo protein Chain: A: PDB Molecule:e6apn1 peptide; PDBTitle: e6-bind trp-cage (e6apn1) Phyre2 PDB 1rqp chain A domain 1 Region: 22 - 67 Aligned: 42 Modelled: 46 Confidence: 25.7% Identity: 14% Fold: Bacterial fluorinating enzyme, C-terminal domain Superfamily: Bacterial fluorinating enzyme, C-terminal domain Family: Bacterial fluorinating enzyme, C-terminal domain Phyre2 PDB 1je6 chain A domain 2 Region: 3 - 49 Aligned: 47 Modelled: 47 Confidence: 24.9% Identity: 15% Fold: MHC antigen-recognition domain Superfamily: MHC antigen-recognition domain Family: MHC antigen-recognition domain Phyre2 PDB 2h3j chain A domain 1 Region: 45 - 60 Aligned: 16 Modelled: 16 Confidence: 21.8% Identity: 38% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: FeoA-like Phyre2 PDB 1y8x chain B domain 1 Region: 47 - 61 Aligned: 15 Modelled: 15 Confidence: 20.2% Identity: 27% Fold: Activating enzymes of the ubiquitin-like proteins Superfamily: Activating enzymes of the ubiquitin-like proteins Family: Ubiquitin activating enzymes (UBA) Phyre2 PDB 1o4z chain A Region: 60 - 71 Aligned: 12 Modelled: 12 Confidence: 20.0% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:beta-agarase b; PDBTitle: the three-dimensional structure of beta-agarase b from2 zobellia galactanivorans Phyre2 PDB 1o4z chain A Region: 60 - 71 Aligned: 12 Modelled: 12 Confidence: 20.0% Identity: 25% Fold: Concanavalin A-like lectins/glucanases Superfamily: Concanavalin A-like lectins/glucanases Family: Glycosyl hydrolases family 16 Phyre2 PDB 3fru chain A domain 2 Region: 2 - 49 Aligned: 48 Modelled: 48 Confidence: 19.4% Identity: 13% Fold: MHC antigen-recognition domain Superfamily: MHC antigen-recognition domain Family: MHC antigen-recognition domain Phyre2 PDB 2qdy chain A domain 1 Region: 47 - 78 Aligned: 32 Modelled: 32 Confidence: 18.7% Identity: 22% Fold: Nitrile hydratase alpha chain Superfamily: Nitrile hydratase alpha chain Family: Nitrile hydratase alpha chain Phyre2 1 d1mvfd_ 2 d1ub4c_ 3 c2hdeA_ 4 d2j0na1 5 d1w44a_ 6 c3mhxB_ 7 d2dkya1 8 c2jpiA_ 9 d1hn0a3 10 c2l66B_ 11 d2h80a1 12 c1rijA_ 13 d1rqpa1 14 d1je6a2 15 d2h3ja1 16 d1y8xb1 17 c1o4zA_ 18 d1o4za_ 19 d3frua2 20 d2qdya1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1mvfd_ 95.1 12 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 2 d1ub4c_ 89.1 16 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 3 c2hdeA_ 59.1 23 PDB header:transcription Chain: A: PDB Molecule:histone deacetylase complex subunit sap18; PDBTitle: solution structure of human sap18 4 d2j0na1 46.2 20 Fold:IpaD-like Superfamily:IpaD-like Family:IpaD-like 5 d1w44a_ 37.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 6 c3mhxB_ 37.4 18 PDB header:metal transport Chain: B: PDB Molecule:putative ferrous iron transport protein a; PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor 7 d2dkya1 29.7 56 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 8 c2jpiA_ 28.6 9 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa 9 d1hn0a3 27.5 27 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 10 c2l66B_ 27.1 23 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 11 d2h80a1 26.7 75 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 12 c1rijA_ 26.1 44 PDB header:de novo protein Chain: A: PDB Molecule:e6apn1 peptide; PDBTitle: e6-bind trp-cage (e6apn1) 13 d1rqpa1 25.7 14 Fold:Bacterial fluorinating enzyme, C-terminal domain Superfamily:Bacterial fluorinating enzyme, C-terminal domain Family:Bacterial fluorinating enzyme, C-terminal domain 14 d1je6a2 24.9 15 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 15 d2h3ja1 21.8 38 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 16 d1y8xb1 20.2 27 Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Ubiquitin activating enzymes (UBA) 17 c1o4zA_ 20.0 25 PDB header:hydrolase Chain: A: PDB Molecule:beta-agarase b; PDBTitle: the three-dimensional structure of beta-agarase b from2 zobellia galactanivorans 18 d1o4za_ 20.0 25 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 19 d3frua2 19.4 13 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 20 d2qdya1 18.7 22 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 21 c3d33B_ not modelled 17.0 17 PDB header:unknown function Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution 22 c2k5lA_ not modelled 16.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17 23 d1qvpa_ not modelled 16.5 26 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 24 c1x1aA_ not modelled 16.4 22 PDB header:transferase Chain: A: PDB Molecule:crtf-related protein; PDBTitle: crystal structure of bchu complexed with s-adenosyl-l-methionine 25 c2im5C_ not modelled 16.3 24 PDB header:transferase Chain: C: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of nicotinate phosphoribosyltransferase2 from porphyromonas gingivalis 26 d1vlfm1 not modelled 16.0 23 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 27 c3os4A_ not modelled 16.0 24 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: the crystal structure of nicotinate phosphoribosyltransferase from2 yersinia pestis 28 c2k5fA_ not modelled 15.3 18 PDB header:metal transport Chain: A: PDB Molecule:ferrous iron transport protein a; PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121 29 d1yira2 not modelled 15.3 17 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like 30 c2k4yA_ not modelled 15.1 23 PDB header:metal transport Chain: A: PDB Molecule:feoa-like protein; PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178 31 d1fp2a2 not modelled 15.0 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Plant O-methyltransferase, C-terminal domain 32 c3mczB_ not modelled 14.8 28 PDB header:transferase Chain: B: PDB Molecule:o-methyltransferase; PDBTitle: the structure of an o-methyltransferase family protein from2 burkholderia thailandensis. 33 d1h0ha1 not modelled 14.6 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 34 d1udxa3 not modelled 14.5 36 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 35 d1dmra1 not modelled 14.2 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 36 d1yfba1 not modelled 14.0 26 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 37 d1s6la2 not modelled 13.6 38 Fold:NosL/MerB-like Superfamily:NosL/MerB-like Family:MerB-like 38 c2rf4A_ not modelled 13.5 21 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 39 c3nrlB_ not modelled 13.2 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rumgna_01417; PDBTitle: crystal structure of protein rumgna_01417 from ruminococcus gnavus,2 northeast structural genomics consortium target ugr76 40 d2jioa1 not modelled 12.8 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 41 c3pcsB_ not modelled 12.6 22 PDB header:protein transport/transferase Chain: B: PDB Molecule:espg; PDBTitle: structure of espg-pak2 autoinhibitory ialpha3 helix complex 42 d1ok3a2 not modelled 12.6 27 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 43 c2klrA_ not modelled 12.5 27 PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin b chain; PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers 44 c1qw1A_ not modelled 12.1 25 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226 45 d2fzva1 not modelled 12.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 46 d2fy9a1 not modelled 11.5 21 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 47 c2e5qA_ not modelled 11.5 24 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 19; PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens] 48 c2dxbR_ not modelled 11.5 22 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 49 d1kqfa1 not modelled 11.5 22 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 50 c3lstB_ not modelled 11.3 19 PDB header:transferase Chain: B: PDB Molecule:calo1 methyltransferase; PDBTitle: crystal structure of calo1, methyltransferase in calicheamicin2 biosynthesis, sah bound form 51 c3ocjA_ not modelled 11.2 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis 52 d1g8ka1 not modelled 11.2 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 53 c3qyhG_ not modelled 11.0 22 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 54 c1fp2A_ not modelled 11.0 15 PDB header:transferase Chain: A: PDB Molecule:isoflavone o-methyltransferase; PDBTitle: crystal structure analysis of isoflavone o-methyltransferase 55 d1im8a_ not modelled 10.9 33 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein HI0319 (YecO) 56 d1v29a_ not modelled 10.7 25 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 57 d1tmoa1 not modelled 10.7 20 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 58 d2qdyb1 not modelled 10.7 33 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 59 c2dxcG_ not modelled 10.6 40 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 60 d2nn6h1 not modelled 10.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 61 d1eu1a1 not modelled 10.5 24 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 62 d1qw1a1 not modelled 10.4 24 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 63 c3pjyB_ not modelled 10.4 14 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 64 d2d9ra1 not modelled 10.4 23 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 65 d1y5ia1 not modelled 10.2 21 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 66 d2gcxa1 not modelled 10.1 29 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 67 d1kyza2 not modelled 10.1 30 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Plant O-methyltransferase, C-terminal domain 68 c2pjhB_ not modelled 9.9 16 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 69 d1o4ya_ not modelled 9.9 15 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 70 d1qzza2 not modelled 9.8 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Plant O-methyltransferase, C-terminal domain 71 d2iv2x1 not modelled 9.8 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 72 c2yqsA_ not modelled 9.4 20 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 73 d1b35b_ not modelled 9.3 22 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 74 c2wy3C_ not modelled 9.2 15 PDB header:immune system/viral protein Chain: C: PDB Molecule:mhc class i polypeptide-related sequence b; PDBTitle: structure of the hcmv ul16-micb complex elucidates select2 binding of a viral immunoevasin to diverse nkg2d ligands 75 d2pbza2 not modelled 9.2 42 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:PurP ATP-binding domain-like 76 d2ffsa1 not modelled 9.1 10 Fold:TBP-like Superfamily:Bet v1-like Family:PA1206-like 77 c2zbvC_ not modelled 9.0 11 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein from thermotoga2 maritima 78 d1vqoq1 not modelled 8.8 29 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 79 c3dh0B_ not modelled 8.4 44 PDB header:transferase Chain: B: PDB Molecule:sam dependent methyltransferase; PDBTitle: crystal structure of a sam dependent methyltransferase from2 aquifex aeolicus 80 d3bzka4 not modelled 8.3 31 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 81 c1ezaA_ not modelled 8.2 8 PDB header:phosphotransferase Chain: A: PDB Molecule:enzyme i; PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure 82 c2zkrq_ not modelled 8.2 38 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 83 c3q9qB_ not modelled 8.2 24 PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form 84 c2kieA_ not modelled 8.2 22 PDB header:hydrolase Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: a ph domain within ocrl bridges clathrin mediated membrane2 trafficking to phosphoinositide metabolis 85 c2r7mA_ not modelled 8.0 38 PDB header:ligase Chain: A: PDB Molecule:5-formaminoimidazole-4-carboxamide-1-(beta)-d- PDBTitle: crystal structure of faicar synthetase (purp) from m.2 jannaschii complexed with amp 86 c3nnqA_ not modelled 7.8 26 PDB header:viral protein Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3 87 c3p9kD_ not modelled 7.7 30 PDB header:transferase Chain: D: PDB Molecule:caffeic acid o-methyltransferase; PDBTitle: crystal structure of perennial ryegrass lpomt1 complexed with s-2 adenosyl-l-homocysteine and coniferaldehyde 88 d2jb0b1 not modelled 7.6 35 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 89 c2vkcA_ not modelled 7.6 19 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 90 d2pwwa1 not modelled 7.6 18 Fold:TBP-like Superfamily:YugN-like Family:YugN-like 91 c3ilfA_ not modelled 7.4 23 PDB header:hydrolase/carbohydrate Chain: A: PDB Molecule:porphyranase a; PDBTitle: crystal structure of porphyranase a (pora) in complex with2 neo-porphyrotetraose 92 d1zt1a2 not modelled 7.4 23 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 93 c3tixB_ not modelled 7.3 24 PDB header:gene regulation/protein binding Chain: B: PDB Molecule:chromo domain-containing protein 1; PDBTitle: crystal structure of the chp1-tas3 complex core 94 c2zxeB_ not modelled 7.3 42 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:na+,k+-atpase beta subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 95 c3k7cC_ not modelled 7.2 19 PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution 96 d1cz5a1 not modelled 7.2 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 97 c2r5xA_ not modelled 7.1 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein yugn from2 geobacillus kaustophilus hta426 98 c3u02C_ not modelled 7.0 4 PDB header:transcription Chain: C: PDB Molecule:putative transcription-associated protein tfiis; PDBTitle: crystal structure of the trna modifier tias from pyrococcus furiosus,2 northeast structural genomics consortium target pfr225 99 c2c45F_ not modelled 6.9 19 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0