PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3u02C_

Fold library id	PDB Header	Molecule	Title
c3u02C_	PDB header: transcription	Chain: C: PDB Molecule: putative transcription-associated protein tfiis;	PDBTitle: crystal structure of the trna modifier tias from pyrococcus furiosus,2 northeast structural genomics consortium target pfr225

Links to external resources
Added to library: Sat Nov 5 19:11:32 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X L I H I G I D D X C T Y I G A I L Y R E I S K I A E P L D F P R L I R L N N G A V A X S F K I D E E K I K E V K T L V I R Y V R E L A D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S S S
G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N P G I V F L I G E V P K E L E E F S L R A L R E H V T I E E A E H V A R K V N A E V Y G R G I I G G L A A I G Y P L E K F T Y E L L A Y R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K R E Y W G T P R R V I K E S V F Y A D K W S Y P F T Y D N V D P Y K R T V L I T P H G K D P V L V G I R G I D V G K I L Q V F E X I K I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T S
G G G T T S
T T
S
S
T T
S S
S

. . . . . . . . . 220 . . . . .

Sequence E P I E F F Q V Y K T N Q N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	L	I	H	I	G	I	D	D	X	C	T	Y	I	G	A	I	L	Y	R	E	I	S	K	I	A	E	P	L	D	F	P	R	L	I	R	L	N	N	G	A	V	A	X	S	F	K	I	D	E	E	K	I	K	E	V	K	T	L	V	I	R	Y	V	R	E	L	A	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T	T	T	S			S	S	S																			G	G	G															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	P	G	I	V	F	L	I	G	E	V	P	K	E	L	E	E	F	S	L	R	A	L	R	E	H	V	T	I	E	E	A	E	H	V	A	R	K	V	N	A	E	V	Y	G	R	G	I	I	G	G	L	A	A	I	G	Y	P	L	E	K	F	T	Y	E	L	L	A	Y	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S															S														T	T						T														S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	R	E	Y	W	G	T	P	R	R	V	I	K	E	S	V	F	Y	A	D	K	W	S	Y	P	F	T	Y	D	N	V	D	P	Y	K	R	T	V	L	I	T	P	H	G	K	D	P	V	L	V	G	I	R	G	I	D	V	G	K	I	L	Q	V	F	E	X	I	K	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	T	T	S														G	G	G	T	T	S		T	T				S				S							T	T		S								S												S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	E	P	I	E	F	F	Q	V	Y	K	T	N	Q	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S											S