Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	N	N	L	Q	R	D	A	I	A	A	A	I	D	V	L	N	E	E	R	V	I	A	Y	P	T	E	A	V	F	G	V	G	C	D	P	D	S	E	T	A	V	M	R	L	L	E	L	K	Q	R	P	V	D	K	G	L	I	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	A	N	Y	E	Q	L	K	P	Y	I	D	D	T	M	L	T	D	V	Q	R	E	T	I	F	S	R	W	P	G	P	V	T	F	V	F	P	A	P	A	T	T	P	R	W	L	T	G	R	F	D	S	L	A	V	R	V	T	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	P	L	V	V	A	L	C	Q	A	Y	G	K	P	L	V	S	T	S	A	N	L	S	G	L	P	P	C	R	T	V	D	E	V	R	A	Q	F	G	A	A	F	P	V	V	P	G	E	T	G	G	R	L	N	P	S	E	I	R	D
Secondary structure
SS confidence
Disorder																																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190
Sequence		A	L	T	G	E	L	F	R	Q	G
Secondary structure
SS confidence
Disorder					?			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2eqa chain A Region: 3 - 190 Aligned: 186 Modelled: 188 Confidence: 100.0% Identity: 31% PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii Phyre2 PDB 1hru chain A Region: 3 - 188 Aligned: 186 Modelled: 186 Confidence: 100.0% Identity: 99% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 1k7j chain A Region: 2 - 190 Aligned: 186 Modelled: 189 Confidence: 100.0% Identity: 24% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 1jcu chain A Region: 3 - 190 Aligned: 183 Modelled: 188 Confidence: 100.0% Identity: 26% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 3l7v chain A Region: 4 - 169 Aligned: 156 Modelled: 166 Confidence: 100.0% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1377c; PDBTitle: crystal structure of a hypothetical protein smu.1377c from2 streptococcus mutans ua159 Phyre2 PDB 3tsu chain A Region: 7 - 190 Aligned: 172 Modelled: 174 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate Phyre2 PDB 1hq0 chain A Region: 108 - 144 Aligned: 31 Modelled: 37 Confidence: 60.1% Identity: 35% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: Type 1 cytotoxic necrotizing factor, catalytic domain Phyre2 PDB 2qs0 chain A Region: 10 - 98 Aligned: 81 Modelled: 89 Confidence: 58.6% Identity: 20% PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus Phyre2 PDB 3p3d chain A Region: 12 - 46 Aligned: 31 Modelled: 35 Confidence: 56.7% Identity: 35% PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii Phyre2 PDB 2frx chain D Region: 4 - 48 Aligned: 41 Modelled: 45 Confidence: 42.6% Identity: 24% PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli Phyre2 PDB 3mio chain A Region: 8 - 48 Aligned: 41 Modelled: 41 Confidence: 38.9% Identity: 10% PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 Phyre2 PDB 1t5l chain A domain 1 Region: 6 - 104 Aligned: 80 Modelled: 99 Confidence: 35.2% Identity: 20% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 3m4x chain A Region: 6 - 48 Aligned: 39 Modelled: 43 Confidence: 34.9% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase Phyre2 PDB 3m6w chain A Region: 6 - 48 Aligned: 39 Modelled: 43 Confidence: 31.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine Phyre2 PDB 1snn chain A Region: 8 - 48 Aligned: 41 Modelled: 41 Confidence: 28.7% Identity: 20% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 1sol chain A Region: 39 - 52 Aligned: 14 Modelled: 14 Confidence: 27.3% Identity: 43% PDB header:actin-binding protein Chain: A: PDB Molecule:gelsolin (150-169); PDBTitle: a pip2 and f-actin-binding site of gelsolin, residue 150-2 169 (nmr, averaged structure) Phyre2 PDB 1ixk chain A Region: 6 - 48 Aligned: 39 Modelled: 41 Confidence: 23.7% Identity: 18% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: NOL1/NOP2/sun Phyre2 PDB 2oem chain A Region: 124 - 175 Aligned: 51 Modelled: 52 Confidence: 17.4% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate enolase; PDBTitle: crystal structure of a rubisco-like protein from geobacillus2 kaustophilus liganded with mg2+ and 2,3-diketohexane 1-phosphate Phyre2 PDB 2qj8 chain B Region: 123 - 167 Aligned: 45 Modelled: 45 Confidence: 17.3% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution Phyre2 PDB 1k4i chain A Region: 8 - 48 Aligned: 41 Modelled: 41 Confidence: 17.2% Identity: 17% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 1 c2eqaA_ 2 d1hrua_ 3 d1k7ja_ 4 d1jcua_ 5 c3l7vA_ 6 c3tsuA_ 7 d1hq0a_ 8 c2qs0A_ 9 c3p3dA_ 10 c2frxD_ 11 c3mioA_ 12 d1t5la1 13 c3m4xA_ 14 c3m6wA_ 15 d1snna_ 16 c1solA_ 17 d1ixka_ 18 c2oemA_ 19 c2qj8B_ 20 d1k4ia_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2eqaA_ 100.0 31 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii 2 d1hrua_ 100.0 99 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 3 d1k7ja_ 100.0 24 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 4 d1jcua_ 100.0 26 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 5 c3l7vA_ 100.0 15 PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1377c; PDBTitle: crystal structure of a hypothetical protein smu.1377c from2 streptococcus mutans ua159 6 c3tsuA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 7 d1hq0a_ 60.1 35 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:Type 1 cytotoxic necrotizing factor, catalytic domain 8 c2qs0A_ 58.6 20 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 9 c3p3dA_ 56.7 35 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii 10 c2frxD_ 42.6 24 PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli 11 c3mioA_ 38.9 10 PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 12 d1t5la1 35.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 13 c3m4xA_ 34.9 23 PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase 14 c3m6wA_ 31.0 26 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 15 d1snna_ 28.7 20 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 16 c1solA_ 27.3 43 PDB header:actin-binding protein Chain: A: PDB Molecule:gelsolin (150-169); PDBTitle: a pip2 and f-actin-binding site of gelsolin, residue 150-2 169 (nmr, averaged structure) 17 d1ixka_ 23.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 18 c2oemA_ 17.4 12 PDB header:isomerase Chain: A: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate enolase; PDBTitle: crystal structure of a rubisco-like protein from geobacillus2 kaustophilus liganded with mg2+ and 2,3-diketohexane 1-phosphate 19 c2qj8B_ 17.3 16 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 20 d1k4ia_ 17.2 17 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 21 d1pg5a1 not modelled 17.1 8 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 22 d1sqga2 not modelled 16.9 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 23 d1gk8a1 not modelled 16.2 15 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 24 c2yxlA_ not modelled 16.1 22 PDB header:transferase Chain: A: PDB Molecule:450aa long hypothetical fmu protein; PDBTitle: crystal structure of ph0851 25 c2y75F_ not modelled 15.2 11 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 26 c1sqgA_ not modelled 15.0 18 PDB header:transferase Chain: A: PDB Molecule:sun protein; PDBTitle: the crystal structure of the e. coli fmu apoenzyme at 1.652 a resolution 27 c1pt9B_ not modelled 14.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 28 d8ruca1 not modelled 14.0 17 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 29 d1bhea_ not modelled 13.8 8 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 30 c3a4tA_ not modelled 13.7 27 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase mj0026; PDBTitle: crystal structure of atrm4 from m.jannaschii with sinefungin 31 c2vduE_ not modelled 13.3 19 PDB header:transferase Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex 32 d1d4oa_ not modelled 13.3 11 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 33 c2bruC_ not modelled 12.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 34 d1pnoa_ not modelled 11.7 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 35 d1q32a2 not modelled 11.5 67 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 36 c3ckkA_ not modelled 10.9 14 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: crystal structure of human methyltransferase-like protein 1 37 d1ylfa1 not modelled 10.6 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 38 c3nwrA_ not modelled 10.2 20 PDB header:lyase Chain: A: PDB Molecule:a rubisco-like protein; PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum 39 d1jy1a2 not modelled 10.1 67 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 40 d1tksa_ not modelled 9.9 15 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 41 d1g57a_ not modelled 9.7 12 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 42 d1bwva1 not modelled 9.4 18 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 43 c3cgxA_ not modelled 9.0 11 PDB header:transferase Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase; PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution 44 d1yzha1 not modelled 8.9 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TrmB-like 45 d1ekxa1 not modelled 8.8 11 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 46 c2eq8C_ not modelled 8.6 26 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 47 c3sq3C_ not modelled 8.4 67 PDB header:hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant 48 d1wzua1 not modelled 8.3 25 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 49 d1wdda1 not modelled 8.3 16 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 50 c3fk4A_ not modelled 8.3 17 PDB header:isomerase Chain: A: PDB Molecule:rubisco-like protein; PDBTitle: crystal structure of rubisco-like protein from bacillus2 cereus atcc 14579 51 d1vlva1 not modelled 8.2 20 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 52 d1m0sa1 not modelled 7.9 26 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 53 c1nopB_ not modelled 7.8 67 PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide 54 d2ahua2 not modelled 7.8 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 55 c1q32C_ not modelled 7.5 67 PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase 56 d1rmga_ not modelled 7.3 15 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 57 c3p04A_ not modelled 7.1 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 58 d1rbla1 not modelled 6.9 15 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 59 d1lk5a1 not modelled 6.9 24 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 60 c2zviB_ not modelled 6.9 12 PDB header:isomerase Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis 61 c2ouiB_ not modelled 6.8 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: d275p mutant of alcohol dehydrogenase from protozoa entamoeba2 histolytica 62 c2z99A_ not modelled 6.8 16 PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis 63 d1ej7l1 not modelled 6.8 15 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 64 c3caaB_ not modelled 6.7 38 PDB header:serpin Chain: B: PDB Molecule:antichymotrypsin; PDBTitle: cleaved antichymotrypsin a347r 65 c3p04B_ not modelled 6.5 0 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 66 d2d69a1 not modelled 6.5 10 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 67 d2i09a2 not modelled 6.4 40 Fold:DeoB insert domain-like Superfamily:DeoB insert domain-like Family:DeoB insert domain-like 68 d2hi6a1 not modelled 6.4 22 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:AF0055-like 69 d1ykwa1 not modelled 6.3 12 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 70 c3r3hA_ not modelled 6.3 18 PDB header:transferase Chain: A: PDB Molecule:o-methyltransferase, sam-dependent; PDBTitle: crystal structure of o-methyltransferase from legionella pneumophila 71 c1zwvA_ not modelled 6.2 12 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 72 d2f06a1 not modelled 6.1 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 73 d1bxna1 not modelled 6.1 13 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 74 c3qfwB_ not modelled 6.0 13 PDB header:lyase Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase large PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris 75 d1ml4a1 not modelled 6.0 11 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 76 c3tfwB_ not modelled 6.0 10 PDB header:transferase Chain: B: PDB Molecule:putative o-methyltransferase; PDBTitle: crystal structure of a putative o-methyltransferase from klebsiella2 pneumoniae 77 c1bwvA_ not modelled 6.0 17 PDB header:lyase Chain: A: PDB Molecule:protein (ribulose bisphosphate carboxylase); PDBTitle: activated ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco)2 complexed with the reaction intermediate analogue 2-carboxyarabinitol3 1,5-bisphosphate 78 c3shoA_ not modelled 5.9 27 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 79 c2h8bB_ not modelled 5.6 43 PDB header:hormone/growth factor Chain: B: PDB Molecule:insulin-like 3; PDBTitle: solution structure of insl3 80 d1nria_ not modelled 5.6 9 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 81 c1nriA_ not modelled 5.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 82 d2fcaa1 not modelled 5.6 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TrmB-like 83 c2dvzA_ not modelled 5.5 23 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter 84 d1otha1 not modelled 5.5 20 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 85 d2hc5a1 not modelled 5.3 23 Fold:FlaG-like Superfamily:FlaG-like Family:FlaG-like 86 d2c42a3 not modelled 5.2 11 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Pyruvate-ferredoxin oxidoreductase, PFOR, domain II 87 c3sftA_ not modelled 5.2 6 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of thermotoga maritima cheb methylesterase catalytic2 domain 88 c3fs2A_ not modelled 5.1 5 PDB header:transferase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate2 aldolase from bruciella melitensis at 1.85a resolution 89 c3dxyA_ not modelled 5.1 17 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: crystal structure of ectrmb in complex with sam

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0