Email l.a.kelley@imperial.ac.uk Description P77694 Date Thu Jan 5 12:31:44 GMT 2012 Unique Job ID dea2b89a0ac83a3f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1cb8A_ 75.4 19 PDB header:lyase Chain: A: PDB Molecule:protein (chondroitinase ac); PDBTitle: chondroitinase ac lyase from flavobacterium heparinum 2 c1o7dD_ 75.0 12 PDB header:hydrolase Chain: D: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 3 c2wdaA_ 30.9 12 PDB header:lyase Chain: A: PDB Molecule:putative secreted lyase; PDBTitle: the x-ray structure of the streptomyces coelicolor a32 chondroitin ac lyase in complex with chondroitin sulphate 4 c2wj9A_ 29.8 21 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:intergenic-region protein; PDBTitle: ardb 5 d2gtlm1 28.8 24 Fold:Streptavidin-like Superfamily:Extracellular hemoglobin linker subunit, receptor domain Family:Extracellular hemoglobin linker subunit, receptor domain 6 c2qqoB_ 23.4 33 PDB header:signaling protein Chain: B: PDB Molecule:neuropilin-2; PDBTitle: crystal structure of the a2b1b2 domains from human neuropilin-2 7 c1geaA_ 19.5 38 PDB header:neuropeptide Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: receptor-bound conformation of pacap21 8 d2nqda1 19.4 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like 9 d1ogmx1 18.9 20 Fold:Dextranase, N-terminal domain Superfamily:Dextranase, N-terminal domain Family:Dextranase, N-terminal domain 10 c2b9sB_ 18.5 33 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 11 d2gtln1 18.3 40 Fold:Streptavidin-like Superfamily:Extracellular hemoglobin linker subunit, receptor domain Family:Extracellular hemoglobin linker subunit, receptor domain 12 d1tpna_ 16.3 41 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 13 d1hxma1 15.1 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 14 d2c34a1 14.9 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like 15 c3pstA_ 14.6 18 PDB header:nuclear protein Chain: A: PDB Molecule:protein doa1; PDBTitle: crystal structure of pul and pfu(mutate) domain 16 c3biyA_ 14.5 47 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase p300; PDBTitle: crystal structure of p300 histone acetyltransferase domain in complex2 with a bisubstrate inhibitor, lys-coa 17 c3o7oB_ 14.1 25 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: use of synthetic symmetrization in the crystallization and structure2 determination of cela from thermotoga maritima 18 c3ts3D_ 13.5 24 PDB header:viral protein Chain: D: PDB Molecule:capsid polyprotein; PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution 19 c1dgjA_ 13.1 32 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 20 c2janD_ 12.8 24 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 21 d2icya1 not modelled 12.6 28 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 22 c2k89A_ not modelled 12.1 18 PDB header:protein binding Chain: A: PDB Molecule:phospholipase a-2-activating protein; PDBTitle: solution structure of a novel ubiquitin-binding domain from2 human plaa (pfuc, gly76-pro77 cis isomer) 23 c2kmgA_ not modelled 11.9 32 PDB header:gene regulation Chain: A: PDB Molecule:klca; PDBTitle: the structure of the klca and ardb proteins show a novel2 fold and antirestriction activity against type i dna3 restriction systems in vivo but not in vitro 24 d1wioa2 not modelled 11.9 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 25 c1hn0A_ not modelled 11.8 10 PDB header:lyase Chain: A: PDB Molecule:chondroitin abc lyase i; PDBTitle: crystal structure of chondroitin abc lyase i from proteus2 vulgaris at 1.9 angstroms resolution 26 c3csyJ_ not modelled 11.3 21 PDB header:immune system/viral protein Chain: J: PDB Molecule:envelope glycoprotein gp2; PDBTitle: crystal structure of the trimeric prefusion ebola virus glycoprotein2 in complex with a neutralizing antibody from a human survivor 27 d2guma1 not modelled 11.3 21 Fold:Viral glycoprotein ectodomain-like Superfamily:Viral glycoprotein ectodomain-like Family:Glycoprotein B-like 28 d1j8hd1 not modelled 11.1 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 29 d1sddb4 not modelled 10.9 39 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 30 c3nw8B_ not modelled 10.8 21 PDB header:viral protein Chain: B: PDB Molecule:envelope glycoprotein b; PDBTitle: glycoprotein b from herpes simplex virus type 1, y179s mutant, high-ph 31 c2ol3A_ not modelled 10.4 26 PDB header:immune system Chain: A: PDB Molecule:bm3.3 t-cell receptor alpha-chain; PDBTitle: crystal structure of bm3.3 scfv tcr in complex with pbm8-h-2kbm8 mhc2 class i molecule 32 d2gtlo1 not modelled 10.1 37 Fold:Streptavidin-like Superfamily:Extracellular hemoglobin linker subunit, receptor domain Family:Extracellular hemoglobin linker subunit, receptor domain 33 c1wygA_ not modelled 9.8 32 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 34 c2lcyA_ not modelled 9.7 19 PDB header:viral protein Chain: A: PDB Molecule:virion spike glycoprotein; PDBTitle: nmr structure of the complete internal fusion loop from ebolavirus gp22 at ph 5.5 35 d1ehxa_ not modelled 9.3 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cellulosomal scaffoldin protein CipC, module x2.1 36 d1ks5a_ not modelled 9.0 17 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 37 d1czsa_ not modelled 9.0 39 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 38 c1bhgB_ not modelled 8.9 33 PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution 39 d1ypze1 not modelled 8.9 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 40 c2e7mA_ not modelled 8.8 15 PDB header:structural protein Chain: A: PDB Molecule:protein kiaa0319; PDBTitle: solution structure of the pkd domain (329-428) from human2 kiaa0319 41 c2l3iA_ not modelled 8.8 33 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 42 d2je8a4 not modelled 8.6 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 43 d1fvca_ not modelled 8.5 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 44 c1sddB_ not modelled 8.2 39 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai 45 d2phna1 not modelled 8.2 32 Fold:CofE-like Superfamily:CofE-like Family:CofE-like 46 c2rqeA_ not modelled 7.8 21 PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition 47 d2z15a1 not modelled 7.8 45 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 48 d1wtla_ not modelled 7.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 49 c2jemB_ not modelled 7.6 31 PDB header:hydrolase Chain: B: PDB Molecule:endo-beta-1,4-glucanase; PDBTitle: native family 12 xyloglucanase from bacillus licheniformis 50 d3e9va1 not modelled 7.6 45 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 51 d1oa2a_ not modelled 7.6 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 52 d1dl0a_ not modelled 7.5 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 53 c1dl0A_ not modelled 7.5 57 PDB header:toxin Chain: A: PDB Molecule:j-atracotoxin-hv1c; PDBTitle: solution structure of the insecticidal neurotoxin j-2 atracotoxin-hv1c 54 c3cdzB_ not modelled 7.4 22 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii light chain; PDBTitle: crystal structure of human factor viii 55 d1sddb3 not modelled 7.4 17 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 56 c2qqlA_ not modelled 7.4 33 PDB header:signaling protein Chain: A: PDB Molecule:neuropilin-2; PDBTitle: neuropilin-2 a1a2b1b2 domains in complex with a semaphorin-blocking2 fab 57 d1dc1a_ not modelled 7.4 24 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease BsobI 58 d2bw8a1 not modelled 7.3 21 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 59 c1h0bA_ not modelled 7.3 21 PDB header:hydrolase Chain: A: PDB Molecule:cellulase; PDBTitle: endoglucanase cel12a from rhodothermus marinus 60 d1oa3a_ not modelled 7.3 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 61 d1y4wa1 not modelled 7.2 26 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 32 C-terminal domain 62 c3f59A_ not modelled 7.2 25 PDB header:structural protein Chain: A: PDB Molecule:ankyrin-1; PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin 63 d2qaln1 not modelled 7.0 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Ribosomal protein S14 64 d1olra_ not modelled 6.9 24 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 65 c3ie4A_ not modelled 6.8 39 PDB header:immune system Chain: A: PDB Molecule:gram-negative binding protein 3; PDBTitle: b-glucan binding domain of drosophila gnbp3 defines a novel2 family of pattern recognition receptor 66 c2orxA_ not modelled 6.7 33 PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:neuropilin-1; PDBTitle: structural basis for ligand binding and heparin mediated activation of2 neuropilin 67 c1g6iA_ not modelled 6.4 33 PDB header:hydrolase Chain: A: PDB Molecule:class i alpha-1,2-mannosidase; PDBTitle: crystal structure of the yeast alpha-1,2-mannosidase with bound 1-2 deoxymannojirimycin at 1.59 a resolution 68 c3dnlG_ not modelled 6.3 45 PDB header:viral protein Chain: G: PDB Molecule:hiv-1 envelope glycoprotein gp120; PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-2 bound state 69 d1tifa_ not modelled 6.3 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 70 c2cseB_ not modelled 6.3 10 PDB header:virus Chain: B: PDB Molecule:major outer-capsid protein mu1; PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution 71 c1jmuD_ not modelled 6.2 10 PDB header:viral protein Chain: D: PDB Molecule:protein mu-1; PDBTitle: crystal structure of the reovirus mu1/sigma3 complex 72 d1sgoa_ not modelled 6.1 20 Fold:N domain of copper amine oxidase-like Superfamily:Hypothetical protein c14orf129, hspc210 Family:Hypothetical protein c14orf129, hspc210 73 d1vl4a_ not modelled 6.1 20 Fold:Putative modulator of DNA gyrase, PmbA/TldD Superfamily:Putative modulator of DNA gyrase, PmbA/TldD Family:Putative modulator of DNA gyrase, PmbA/TldD 74 c1w3gA_ not modelled 6.0 20 PDB header:toxin/lectin Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus; PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules. 75 d2ijra1 not modelled 5.9 33 Fold:Api92-like Superfamily:Api92-like Family:Api92-like 76 d1udza_ not modelled 5.9 55 Fold:ValRS/IleRS/LeuRS editing domain Superfamily:ValRS/IleRS/LeuRS editing domain Family:ValRS/IleRS/LeuRS editing domain 77 d2ae8a2 not modelled 5.8 45 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Imidazole glycerol phosphate dehydratase 78 d2cu8a2 not modelled 5.7 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 79 c2z5cB_ not modelled 5.7 33 PDB header:chaperone/hydrolase Chain: B: PDB Molecule:uncharacterized protein ylr021w; PDBTitle: crystal structure of a novel chaperone complex for yeast2 20s proteasome assembly 80 c3nttA_ not modelled 5.6 7 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: structural insights of adeno-associated virus 5. a gene therapy vector2 for cystic fibrosis 81 c3lemA_ not modelled 5.6 19 PDB header:hydrolase Chain: A: PDB Molecule:fructosyltransferase; PDBTitle: crystal structure of fructosyltransferase (d191a) from a. japonicus in2 complex with nystose 82 c3l3fX_ not modelled 5.5 18 PDB header:protein binding Chain: X: PDB Molecule:protein doa1; PDBTitle: crystal structure of a pfu-pul domain pair of saccharomyces cerevisiae2 doa1/ufd3 83 d2qqia2 not modelled 5.5 14 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 84 c3kieF_ not modelled 5.4 14 PDB header:virus Chain: F: PDB Molecule:capsid protein vp1; PDBTitle: crystal structure of adeno-associated virus serotype 3b 85 c2qqmA_ not modelled 5.4 29 PDB header:signaling protein Chain: A: PDB Molecule:neuropilin-1; PDBTitle: crystal structure of the a2b1b2 domains from human neuropilin-1 86 d2vzsa4 not modelled 5.4 25 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 87 d1dl2a_ not modelled 5.3 33 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 88 d1rhya2 not modelled 5.3 32 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Imidazole glycerol phosphate dehydratase 89 d1vpba_ not modelled 5.3 20 Fold:Putative modulator of DNA gyrase, PmbA/TldD Superfamily:Putative modulator of DNA gyrase, PmbA/TldD Family:Putative modulator of DNA gyrase, PmbA/TldD 90 c2r7eB_ not modelled 5.2 22 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii; PDBTitle: crystal structure analysis of coagulation factor viii 91 d1x9da1 not modelled 5.2 36 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 92 c1x9dA_ not modelled 5.2 36 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1, PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue 93 d1ky9a1 not modelled 5.2 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 94 d1klra_ not modelled 5.2 56 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 95 c1klrA_ not modelled 5.2 56 PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of the zfy-6t[y10f] zinc finger 96 d1d0da_ not modelled 5.1 47 Fold:BPTI-like Superfamily:BPTI-like Family:Soft tick anticoagulant proteins 97 c3o0aB_ not modelled 5.1 27 PDB header:ligase Chain: B: PDB Molecule:leucyl-trna synthetase subunit alpha; PDBTitle: crystal structure of the wild type cp1 hydrolitic domain from aquifex2 aeolicus leucyl-trna 98 c2g8gA_ not modelled 5.0 14 PDB header:virus Chain: A: PDB Molecule:capsid; PDBTitle: structurally mapping the diverse phenotype of adeno-2 associated virus serotype 4