Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	I	G	F	D	Y	G	T	A	N	C	S	V	A	V	M	R	D	G	K	P	H	L	L	K	M	E	N	D	S	T	L	L	P	S	M	L	C	A	P	T	R	E	A	V	S	E	W	L	Y	R	H	H	D	V	P	A	D	D
Secondary structure
SS confidence
Disorder		?																																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	E	T	Q	A	L	L	R	R	A	I	R	Y	N	R	E	E	D	I	D	V	T	A	K	S	V	Q	F	G	L	S	S	L	A	Q	Y	I	D	D	P	E	E	V	W	F	V	K	S	P	K	S	F	L	G	A	S	G	L	K	P
Secondary structure
SS confidence
Disorder																					?																															?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	Q	V	A	L	F	E	D	L	V	C	A	M	M	L	H	I	R	Q	Q	A	Q	A	Q	L	P	E	A	I	T	Q	A	V	I	G	R	P	I	N	F	Q	G	L	G	G	D	E	A	N	T	Q	A	Q	G	I	L	E	R	A	A
Secondary structure
SS confidence
Disorder																																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	R	A	G	F	R	D	V	V	F	Q	Y	E	P	V	A	A	G	L	D	Y	E	A	T	L	Q	E	E	K	R	V	L	V	V	D	I	G	G	G	T	T	D	C	S	L	L	L	M	G	P	Q	W	R	S	R	L	D	R	E	A
Secondary structure
SS confidence
Disorder																																																			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	L	L	G	H	S	G	C	R	I	G	G	N	D	L	D	I	A	L	A	F	K	N	L	M	P	L	L	G	M	G	G	E	T	E	K	G	I	A	L	P	I	L	P	W	W	N	A	V	A	I	N	D	V	P	A	Q	S	D	F
Secondary structure
SS confidence
Disorder																															?		?	?	?	?	?	?		?	?	?	?		?	?										?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Y	S	S	A	N	G	R	L	L	N	D	L	V	R	D	A	R	E	P	E	K	V	A	L	L	Q	K	V	W	R	Q	R	L	S	Y	R	L	V	R	S	A	E	E	C	K	I	A	L	S	S	V	A	E	T	R	A	S	L	P	F
Secondary structure
SS confidence
Disorder		?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	S	N	E	L	A	T	L	I	S	Q	R	G	L	E	S	A	L	S	Q	P	L	T	R	I	L	E	Q	V	Q	L	A	L	D	N	A	Q	E	K	P	D	V	I	Y	L	T	G	G	S	A	R	S	P	L	I	K	K	A	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Sequence		E	Q	L	P	G	I	P	I	A	G	G	D	D	F	G	S	V	T	A	G	L	A	R	W	A	E	V	V	F	R
Secondary structure
SS confidence
Disorder																										?			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3d2f chain C Region: 1 - 448 Aligned: 369 Modelled: 383 Confidence: 100.0% Identity: 20% PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 Phyre2 PDB 2v7y chain A Region: 1 - 448 Aligned: 338 Modelled: 345 Confidence: 100.0% Identity: 26% PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state Phyre2 PDB 2kho chain A Region: 3 - 448 Aligned: 367 Modelled: 383 Confidence: 100.0% Identity: 25% PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate Phyre2 PDB 1dkg chain D Region: 3 - 448 Aligned: 363 Modelled: 377 Confidence: 100.0% Identity: 25% PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak Phyre2 PDB 1hpm chain A Region: 3 - 448 Aligned: 366 Modelled: 374 Confidence: 100.0% Identity: 21% PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site Phyre2 PDB 3iuc chain C Region: 3 - 448 Aligned: 366 Modelled: 381 Confidence: 100.0% Identity: 23% PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp Phyre2 PDB 2v7z chain A Region: 3 - 448 Aligned: 366 Modelled: 374 Confidence: 100.0% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state Phyre2 PDB 1jcg chain A Region: 1 - 448 Aligned: 317 Modelled: 328 Confidence: 100.0% Identity: 22% PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp Phyre2 PDB 1e4g chain T Region: 1 - 445 Aligned: 333 Modelled: 346 Confidence: 100.0% Identity: 15% PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima Phyre2 PDB 3h1q chain B Region: 2 - 445 Aligned: 243 Modelled: 280 Confidence: 100.0% Identity: 24% PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans Phyre2 PDB 1dkg chain D domain 2 Region: 208 - 448 Aligned: 183 Modelled: 189 Confidence: 100.0% Identity: 30% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1bup chain A domain 2 Region: 205 - 448 Aligned: 186 Modelled: 192 Confidence: 100.0% Identity: 26% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1o1f chain 4 Region: 3 - 446 Aligned: 319 Modelled: 353 Confidence: 100.0% Identity: 18% PDB header:contractile protein Chain: 4: PDB Molecule:skeletal muscle actin; PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle Phyre2 PDB 2e8a chain A domain 1 Region: 3 - 205 Aligned: 181 Modelled: 189 Confidence: 100.0% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 2e8a chain A domain 2 Region: 206 - 448 Aligned: 185 Modelled: 191 Confidence: 100.0% Identity: 28% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1bup chain A domain 1 Region: 3 - 206 Aligned: 182 Modelled: 190 Confidence: 100.0% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 2d0o chain A Region: 172 - 449 Aligned: 202 Modelled: 213 Confidence: 100.0% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:diol dehydratase-reactivating factor large PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+ Phyre2 PDB 1mwm chain A Region: 1 - 445 Aligned: 300 Modelled: 320 Confidence: 99.9% Identity: 16% PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Phyre2 PDB 1dkg chain D domain 1 Region: 3 - 205 Aligned: 178 Modelled: 186 Confidence: 99.9% Identity: 20% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1jce chain A domain 2 Region: 203 - 448 Aligned: 180 Modelled: 191 Confidence: 99.9% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 1 c3d2fC_ 2 c2v7yA_ 3 c2khoA_ 4 c1dkgD_ 5 c1hpmA_ 6 c3iucC_ 7 c2v7zA_ 8 c1jcgA_ 9 c1e4gT_ 10 c3h1qB_ 11 d1dkgd2 12 d1bupa2 13 c1o1f4_ 14 d2e8aa1 15 d2e8aa2 16 d1bupa1 17 c2d0oA_ 18 c1mwmA_ 19 d1dkgd1 20 d1jcea2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3d2fC_ 100.0 20 PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 2 c2v7yA_ 100.0 26 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 3 c2khoA_ 100.0 25 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate 4 c1dkgD_ 100.0 25 PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 5 c1hpmA_ 100.0 21 PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site 6 c3iucC_ 100.0 23 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp 7 c2v7zA_ 100.0 21 PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state 8 c1jcgA_ 100.0 22 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 9 c1e4gT_ 100.0 15 PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima 10 c3h1qB_ 100.0 24 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 11 d1dkgd2 100.0 30 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 12 d1bupa2 100.0 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 13 c1o1f4_ 100.0 18 PDB header:contractile protein Chain: 4: PDB Molecule:skeletal muscle actin; PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle 14 d2e8aa1 100.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 15 d2e8aa2 100.0 28 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 16 d1bupa1 100.0 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 17 c2d0oA_ 100.0 18 PDB header:chaperone Chain: A: PDB Molecule:diol dehydratase-reactivating factor large PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+ 18 c1mwmA_ 99.9 16 PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form 19 d1dkgd1 99.9 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 20 d1jcea2 99.9 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 21 c2fsnB_ not modelled 99.9 20 PDB header:structural protein Chain: B: PDB Molecule:hypothetical protein ta0583; PDBTitle: crystal structure of ta0583, an archaeal actin homolog, complex with2 adp 22 c3dwlB_ not modelled 99.9 17 PDB header:structural protein Chain: B: PDB Molecule:actin-related protein 3; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 23 c2p9lA_ not modelled 99.9 16 PDB header:structural protein Chain: A: PDB Molecule:actin-like protein 3; PDBTitle: crystal structure of bovine arp2/3 complex 24 d1jcea1 not modelled 99.9 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 25 c2ychA_ not modelled 99.9 25 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 26 c3js6A_ not modelled 99.8 16 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein 27 d1e4ft2 not modelled 99.8 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 28 c3qb0C_ not modelled 99.7 14 PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp 29 d2zgya2 not modelled 99.7 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 30 d1huxa_ not modelled 99.7 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 31 d2fsja1 not modelled 99.6 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ta0583-like 32 d1nm1a2 not modelled 99.3 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 33 d2hf3a2 not modelled 99.2 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 34 d2fxua2 not modelled 99.1 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 35 d1yaga2 not modelled 98.8 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 36 d1k8ka2 not modelled 98.8 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 37 c3gg4B_ not modelled 98.7 12 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 38 d1k8kb1 not modelled 98.6 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 39 c2e2pA_ not modelled 98.6 16 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 40 c2p9kB_ not modelled 98.5 19 PDB header:structural protein Chain: B: PDB Molecule:actin-like protein 2; PDBTitle: crystal structure of bovine arp2/3 complex co-crystallized2 with atp and crosslinked with glutaraldehyde 41 c3i8bA_ not modelled 98.4 21 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 42 d2p3ra2 not modelled 98.3 9 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 43 c2nlxA_ not modelled 98.3 22 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 44 d1r59o2 not modelled 98.3 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 45 c2cgkB_ not modelled 98.3 12 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 46 c2d4wA_ not modelled 98.3 17 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 47 c2dpnB_ not modelled 98.3 24 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 48 c3flcX_ not modelled 98.3 14 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 49 c3ifrB_ not modelled 98.3 19 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 50 c1glbG_ not modelled 98.3 9 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 51 c3jvpA_ not modelled 98.3 17 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 52 c3gbtA_ not modelled 98.2 21 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 53 c3g25B_ not modelled 98.2 11 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 54 c3hz6A_ not modelled 98.2 23 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 55 c1xupO_ not modelled 98.2 15 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 56 c1nbwA_ not modelled 98.2 19 PDB header:hydrolase Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit; PDBTitle: glycerol dehydratase reactivase 57 c3ezwD_ not modelled 98.1 10 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 58 c2zf5O_ not modelled 98.1 13 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 59 d2ewsa1 not modelled 97.9 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 60 c2w40C_ not modelled 97.9 14 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 61 c1t6dB_ not modelled 97.6 20 PDB header:hydrolase Chain: B: PDB Molecule:exopolyphosphatase; PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant 62 d2d0oa3 not modelled 97.5 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ATPase domain of dehydratase reactivase alpha subunit 63 c2ap1A_ not modelled 97.4 19 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 64 d1nbwa3 not modelled 97.4 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ATPase domain of dehydratase reactivase alpha subunit 65 c2qm1D_ not modelled 97.3 16 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 66 c3h6eB_ not modelled 97.2 16 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans 67 c2floA_ not modelled 97.0 21 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7 68 c3htvA_ not modelled 96.7 18 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 69 c3hi0B_ not modelled 96.7 15 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 70 d1e4ft1 not modelled 96.3 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 71 c3eo3B_ not modelled 96.1 17 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 72 c2ch5D_ not modelled 95.8 14 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 73 d1t6ca2 not modelled 95.7 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 74 c3r8eA_ not modelled 95.6 17 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 75 c3cqyA_ not modelled 95.5 22 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 76 d1saza2 not modelled 95.3 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 77 c1z6rC_ not modelled 95.2 21 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 78 d1yaga1 not modelled 94.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 79 c1z05A_ not modelled 94.9 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 80 c1sazA_ not modelled 94.9 15 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 81 d1z05a2 not modelled 94.7 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 82 c3tsuA_ not modelled 94.6 13 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 83 c3cerD_ not modelled 94.4 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:possible exopolyphosphatase-like protein; PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13 84 d2fxua1 not modelled 94.0 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 85 d2ap1a1 not modelled 93.9 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 86 c3mdqA_ not modelled 93.8 19 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution 87 c2aa4B_ not modelled 93.8 12 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 88 c3qbwA_ not modelled 93.6 21 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate 89 d2p3ra1 not modelled 93.5 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 90 d2ap1a2 not modelled 93.5 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 91 d1c0fa1 not modelled 93.4 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 92 d2aa4a2 not modelled 92.8 8 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 93 d2hf3a1 not modelled 92.6 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 94 c3enoB_ not modelled 92.5 15 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 95 d3bexa1 not modelled 91.6 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 96 c3vgkB_ not modelled 91.3 13 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 97 c1zc6A_ not modelled 91.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 98 d1r59o1 not modelled 90.7 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 99 c2ivoC_ not modelled 90.3 15 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 100 d1xc3a1 not modelled 89.7 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 101 d1u6za3 not modelled 89.0 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 102 d1vhxa_ not modelled 88.6 30 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 103 c3cetA_ not modelled 88.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: crystal structure of the pantheonate kinase-like protein2 q6m145 at the resolution 1.8 a. northeast structural3 genomics consortium target mrr63 104 d2hoea2 not modelled 87.7 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 105 d1z6ra3 not modelled 87.4 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 106 d1zc6a1 not modelled 87.4 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 107 c2gupA_ not modelled 87.2 13 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 108 d1iv0a_ not modelled 86.9 30 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 109 c2q2rA_ not modelled 86.5 24 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 110 d2zgya1 not modelled 86.4 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 111 d2ch5a2 not modelled 86.3 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 112 d2ch5a1 not modelled 85.4 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 113 d1nu0a_ not modelled 85.1 26 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 114 c2h3gX_ not modelled 85.0 24 PDB header:biosynthetic protein Chain: X: PDB Molecule:biosynthetic protein; PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis 115 d1b74a2 not modelled 84.8 25 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 116 d2gupa2 not modelled 82.1 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 117 c2hoeA_ not modelled 81.1 14 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 118 c3bf1C_ not modelled 80.9 27 PDB header:transferase Chain: C: PDB Molecule:type iii pantothenate kinase; PDBTitle: type iii pantothenate kinase from thermotoga maritima2 complexed with pantothenate and adp 119 c3djcA_ not modelled 80.8 16 PDB header:transferase Chain: A: PDB Molecule:type iii pantothenate kinase; PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila 120 d1czan3 not modelled 80.1 32 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0