Email l.a.kelley@imperial.ac.uk Description P50466 Date Thu Jan 5 12:04:47 GMT 2012 Unique Job ID dcf4218dc4c88ada

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2wkqA_ 99.9 20 PDB header:transferase, cell adhesion Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant 2 d1p97a_ 99.8 19 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Hypoxia-inducible factor Hif2a, C-terminal domain 3 c3rtyA_ 99.8 6 PDB header:circadian clock protein Chain: A: PDB Molecule:period circadian protein; PDBTitle: structure of an enclosed dimer formed by the drosophila period protein 4 d1jnua_ 99.8 19 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Flavin-binding PAS domain 5 c2z6dB_ 99.8 20 PDB header:transferase Chain: B: PDB Molecule:phototropin-2; PDBTitle: crystal structure of lov1 domain of phototropin2 from2 arabidopsis thaliana 6 d1bywa_ 99.7 18 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Flavin-binding PAS domain 7 c3f1oB_ 99.7 21 PDB header:transcription Chain: B: PDB Molecule:aryl hydrocarbon receptor nuclear translocator; PDBTitle: crystal structure of the high affinity heterodimer of hif22 alpha and arnt c-terminal pas domains, with an internally-3 bound artificial ligand 8 c2v1bA_ 99.7 20 PDB header:transferase Chain: A: PDB Molecule:nph1-1; PDBTitle: n- and c-terminal helices of oat lov2 (404-546) are2 involved in light-induced signal transduction (room3 temperature (293k) light structure of lov2 (404-546)) 9 c2kdkA_ 99.7 15 PDB header:transcription regulator Chain: A: PDB Molecule:aryl hydrocarbon receptor nuclear translocator-like protein PDBTitle: structure of human circadian clock protein bmal2 c-terminal pas domain 10 d1n9la_ 99.7 22 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Flavin-binding PAS domain 11 c3ewkA_ 99.7 30 PDB header:flavoprotein Chain: A: PDB Molecule:sensor protein; PDBTitle: structure of the redox sensor domain of methylococcus capsulatus2 (bath) mmos 12 c2vlgD_ 99.7 13 PDB header:transferase Chain: D: PDB Molecule:sporulation kinase a; PDBTitle: kina pas-a domain, homodimer 13 c3gdiB_ 99.7 17 PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment 14 c2pr6A_ 99.7 22 PDB header:flavoprotein, signaling protein Chain: A: PDB Molecule:blue-light photoreceptor; PDBTitle: structural basis for light-dependent signaling in the dimeric lov2 photosensor ytva (light structure) 15 c2l4rA_ 99.7 15 PDB header:transport protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h member 2; PDBTitle: nmr solution structure of the n-terminal pas domain of herg 16 d1oj5a_ 99.7 12 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PAS domain of steroid receptor coactivator 1A, NCo-A1 17 c3mjqB_ 99.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the pas domain of q24qt8_deshy protein from2 desulfitobacterium hafniense. northeast structural genomics3 consortium target dhr85c. 18 c3lyxA_ 99.6 22 PDB header:transcription Chain: A: PDB Molecule:sensory box/ggdef domain protein; PDBTitle: crystal structure of the pas domain of the protein cps_12912 from colwellia psychrerythraea. northeast structural3 genomics consortium target id csr222b 19 c2gj3A_ 99.6 24 PDB header:transferase Chain: A: PDB Molecule:nitrogen fixation regulatory protein; PDBTitle: crystal structure of the fad-containing pas domain of the2 protein nifl from azotobacter vinelandii. 20 c3h9wA_ 99.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:diguanylate cyclase with pas/pac sensor; PDBTitle: crystal structure of the n-terminal domain of diguanylate cyclase with2 pas/pac sensor (maqu_2914) from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr66c 21 c3oloB_ not modelled 99.6 10 PDB header:transferase Chain: B: PDB Molecule:two-component sensor histidine kinase; PDBTitle: crystal structure of a pas domain from two-component sensor histidine2 kinase 22 c2pdtD_ not modelled 99.6 19 PDB header:circadian clock protein Chain: D: PDB Molecule:vivid pas protein vvd; PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid 23 c3mqoB_ not modelled 99.6 11 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: the crystal structure of the pas domain in complex with isopropanol of2 a transcriptional regulator in the luxr family from burkholderia3 thailandensis to 1.7a 24 c3b33A_ not modelled 99.6 12 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the pas domain of nitrogen regulation protein2 nr(ii) from vibrio parahaemolyticus 25 d1xj3a1 not modelled 99.6 16 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Heme-binding PAS domain 26 c1v9yA_ not modelled 99.6 17 PDB header:signaling protein Chain: A: PDB Molecule:heme pas sensor protein; PDBTitle: crystal structure of the heme pas sensor domain of ec dos (ferric2 form) 27 d1v9ya_ not modelled 99.6 17 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Heme-binding PAS domain 28 c3caxA_ not modelled 99.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf0695; PDBTitle: crystal structure of uncharacterized protein pf0695 29 c3gecA_ not modelled 99.6 11 PDB header:circadian clock protein Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of a tandem pas domain fragment of2 drosophila period 30 c1wa9A_ not modelled 99.6 9 PDB header:circadian rhythm Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period 31 c3mfxA_ not modelled 99.6 10 PDB header:transcription Chain: A: PDB Molecule:sensory box/ggdef family protein; PDBTitle: crystal structure of the sensory box domain of the sensory-2 box/ggdef protein so_1695 from shewanella oneidensis,3 northeast structural genomics consortium target sor288b 32 d1ew0a_ not modelled 99.5 17 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Heme-binding PAS domain 33 d1y28a_ not modelled 99.5 14 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Heme-binding PAS domain 34 c3fg8B_ not modelled 99.5 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rha05790; PDBTitle: crystal structure of pas domain of rha05790 35 c3luqC_ not modelled 99.5 14 PDB header:transferase Chain: C: PDB Molecule:sensor protein; PDBTitle: the crystal structure of a pas domain from a sensory box2 histidine kinase regulator from geobacter sulfurreducens to3 2.5a 36 c3p7nB_ not modelled 99.5 11 PDB header:dna binding protein Chain: B: PDB Molecule:sensor histidine kinase; PDBTitle: crystal structure of light activated transcription factor el222 from2 erythrobacter litoralis 37 c2r78D_ not modelled 99.5 17 PDB header:transferase Chain: D: PDB Molecule:sensor protein; PDBTitle: crystal structure of a domain of the sensory box sensor2 histidine kinase/response regulator from geobacter3 sulfurreducens 38 c3bwlA_ not modelled 99.5 14 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of pas domain of htr-like protein from haloarcula2 marismortui 39 c3mr0B_ not modelled 99.5 14 PDB header:transcription regulator Chain: B: PDB Molecule:sensory box histidine kinase/response regulator; PDBTitle: crystal structure of sensory box histidine kinase/response regulator2 from burkholderia thailandensis e264 40 c3fc7B_ not modelled 99.5 12 PDB header:transferase Chain: B: PDB Molecule:htr-like protein; PDBTitle: the crystal structure of a domain of htr-like protein from haloarcula2 marismortui atcc 43049 41 d1ll8a_ not modelled 99.4 18 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:N-terminal PAS domain of Pas kinase 42 c3a0vA_ not modelled 99.4 13 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: pas domain of histidine kinase thka (tm1359) (semet,2 f486m/f489m) 43 c3eehA_ not modelled 99.4 14 PDB header:transferase Chain: A: PDB Molecule:putative light and redox sensing histidine kinase; PDBTitle: the crystal structure of the domain of the putative light and redox2 sensing histidine kinase from haloarcula marismortui 44 c1qu7A_ 99.4 51 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 45 c3njaC_ not modelled 99.4 10 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:probable ggdef family protein; PDBTitle: the crystal structure of the pas domain of a ggdef family protein from2 chromobacterium violaceum atcc 12472. 46 d1nwza_ not modelled 99.3 9 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PYP-like 47 d1otda_ not modelled 99.3 10 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PYP-like 48 c3mxqC_ not modelled 99.3 12 PDB header:transferase Chain: C: PDB Molecule:sensor protein; PDBTitle: crystal structure of sensory box sensor histidine kinase from vibrio2 cholerae 49 d1mzua_ not modelled 99.3 11 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PYP-like 50 c3icyB_ not modelled 99.3 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:sensor protein; PDBTitle: the crystal structure of sensory box histidine2 kinase/response regulator domain from chlorobium tepidum3 tls 51 d1xfna1 not modelled 99.2 9 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PYP-like 52 c2oolA_ not modelled 99.2 8 PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris 53 c3k3dA_ not modelled 99.2 18 PDB header:signaling protein Chain: A: PDB Molecule:protein rv1364c/mt1410; PDBTitle: the n-terminal pas domain crystal structure of rv1364c from2 mycobacterium tuberculosis at 2.3 angstrom 54 c2o9bA_ not modelled 99.2 12 PDB header:transferase Chain: A: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain 55 c3a0rA_ not modelled 99.2 11 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 56 c2qkpD_ not modelled 99.1 11 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of c-terminal domain of smu_1151c from streptococcus2 mutans 57 c2jheB_ not modelled 99.0 13 PDB header:transcription Chain: B: PDB Molecule:transcription regulator tyrr; PDBTitle: n-terminal domain of tyrr transcription factor (residues 1 -2 190) 58 c3kx0X_ not modelled 99.0 19 PDB header:signaling protein Chain: X: PDB Molecule:uncharacterized protein rv1364c/mt1410; PDBTitle: crystal structure of the pas domain of rv1364c 59 c2w0nA_ not modelled 98.9 19 PDB header:transferase Chain: A: PDB Molecule:sensor protein dcus; PDBTitle: plasticity of pas domain and potential role for signal2 transduction in the histidine-kinase dcus 60 c2veaA_ not modelled 98.9 8 PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. 61 c2ch7A_ 98.9 22 PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima 62 c3cloC_ not modelled 98.7 10 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution 63 c3g67A_ not modelled 98.3 20 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 64 c3c2wB_ not modelled 97.8 14 PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state 65 c3lnrA_ 97.4 8 PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 66 d2oola2 not modelled 97.2 7 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:BphP N-terminal domain-like 67 d2o9ca2 not modelled 96.6 13 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:BphP N-terminal domain-like 68 d3c2wa3 not modelled 95.9 16 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:BphP N-terminal domain-like 69 d2veaa3 not modelled 95.6 12 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:BphP N-terminal domain-like 70 d2asxa1 95.2 29 Fold:HAMP domain-like Superfamily:HAMP domain-like Family:HAMP domain 71 c2rm8A_ not modelled 93.8 19 PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis 72 c3zrwB_ not modelled 92.2 19 PDB header:signaling protein Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz; PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant 73 c2wpqA_ not modelled 89.2 6 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 74 d1p0za_ not modelled 88.9 19 Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase 75 c1ei3E_ not modelled 88.7 9 PDB header: PDB COMPND: 76 c3ghgK_ not modelled 78.7 14 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 77 c1deqO_ not modelled 78.1 15 PDB header: PDB COMPND: 78 c3fosA_ not modelled 77.7 11 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of two-component sensor histidine kinase domain from2 bacillus subtilis subsp. subtilis str. 168 79 c1sfcJ_ not modelled 75.1 3 PDB header:transport protein Chain: J: PDB Molecule:protein (syntaxin 1a); PDBTitle: neuronal synaptic fusion complex 80 c1ei3C_ not modelled 74.7 7 PDB header: PDB COMPND: 81 c3b5nF_ not modelled 74.1 13 PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex 82 c3ojaB_ not modelled 73.6 10 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 83 c2qhkA_ not modelled 70.0 15 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of methyl-accepting chemotaxis protein from vibrio2 parahaemolyticus rimd 2210633 84 c1m1jA_ not modelled 64.2 10 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 85 d1joya_ not modelled 63.8 15 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 86 c3ipdB_ not modelled 63.7 3 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 87 c2npsB_ not modelled 62.4 14 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex 88 d3by8a1 not modelled 61.9 23 Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase 89 c1deqF_ not modelled 58.0 7 PDB header: PDB COMPND: 90 c1n7sB_ not modelled 57.5 3 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 91 c3ka5A_ not modelled 56.5 24 PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a 92 d2p7ja2 not modelled 48.5 10 Fold:Profilin-like Superfamily:Sensory domain-like Family:YkuI C-terminal domain-like 93 c1kmiZ_ not modelled 48.2 13 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 94 d2c2aa1 not modelled 46.9 14 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 95 c2qltA_ not modelled 43.1 15 PDB header:hydrolase Chain: A: PDB Molecule:(dl)-glycerol-3-phosphatase 1; PDBTitle: crystal structure of an isoform of dl-glycerol-3-phosphatase, rhr2p,2 from saccharomyces cerevisiae 96 c3k2tA_ not modelled 42.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a 97 c3lifA_ not modelled 40.5 17 PDB header:signaling protein Chain: A: PDB Molecule:putative diguanylate cyclase (ggdef) with pas/pac domain; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase rphk1s-z16 98 c3c25A_ not modelled 34.2 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 99 c2d4yA_ not modelled 31.9 8 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 100 c1s94A_ not modelled 30.0 6 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei 101 d1s94a_ not modelled 30.0 6 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 102 c2d3eD_ not modelled 25.5 8 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 103 c2p7jA_ not modelled 25.0 10 PDB header:transcription Chain: A: PDB Molecule:putative sensory box/ggdef family protein; PDBTitle: crystal structure of the domain of putative sensory box/ggdef family2 protein from vibrio parahaemolyticus 104 c3u59C_ not modelled 21.8 14 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 105 c2pkeA_ not modelled 21.7 13 PDB header:hydrolase Chain: A: PDB Molecule:haloacid delahogenase-like family hydrolase; PDBTitle: crystal structure of haloacid delahogenase-like family hydrolase2 (np_639141.1) from xanthomonas campestris at 1.81 a resolution 106 c2xhaB_ not modelled 21.4 22 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of domain 2 of thermotoga maritima n-utilization2 substance g (nusg)