Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	N	I	T	Q	S	W	F	V	Q	G	M	I	K	A	T	T	D	A	W	L	K	G	W	D	E	R	N	G	G	N	L	T	L	R	L	D	D	A	D	I	A	P	Y	H	D	N	F	H	Q	Q	P	R	Y	I	P	L	S	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																							?													?							?			?				?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	M	P	L	L	A	N	T	P	F	I	V	T	G	S	G	K	F	F	R	N	V	Q	L	D	P	A	A	N	L	G	I	V	K	V	D	S	D	G	A	G	Y	H	I	L	W	G	L	T	N	E	A	V	P	T	S	E	L	P	A
Secondary structure
SS confidence
Disorder		?	?																																														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	F	L	S	H	C	E	R	I	K	A	T	N	G	K	D	R	V	I	M	H	C	H	A	T	N	L	I	A	L	T	Y	V	L	E	N	D	T	A	V	F	T	R	Q	L	W	E	G	S	T	E	C	L	V	V	F	P	D	G	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	I	L	P	W	M	V	P	G	T	D	E	I	G	Q	A	T	A	Q	E	M	Q	K	H	S	L	V	L	W	P	F	H	G	V	F	G	S	G	P	T	L	D	E	T	F	G	L	I	D	T	A	E	K	S	A	Q	V	L	V	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Sequence		V	Y	S	M	G	G	M	K	Q	T	I	S	R	E	E	L	I	A	L	G	K	R	F	G	V	T	P	L	A	S	A	L	A	L
Secondary structure
SS confidence
Disorder							?	?	?	?																			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ojr chain A Region: 1 - 274 Aligned: 274 Modelled: 274 Confidence: 100.0% Identity: 100% Fold: AraD/HMP-PK domain-like Superfamily: AraD/HMP-PK domain-like Family: AraD-like aldolase/epimerase Phyre2 PDB 1pvt chain A Region: 7 - 250 Aligned: 229 Modelled: 244 Confidence: 100.0% Identity: 24% Fold: AraD/HMP-PK domain-like Superfamily: AraD/HMP-PK domain-like Family: AraD-like aldolase/epimerase Phyre2 PDB 1e4c chain P Region: 4 - 263 Aligned: 206 Modelled: 231 Confidence: 100.0% Identity: 19% Fold: AraD/HMP-PK domain-like Superfamily: AraD/HMP-PK domain-like Family: AraD-like aldolase/epimerase Phyre2 PDB 3ocr chain A Region: 6 - 262 Aligned: 210 Modelled: 223 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:class ii aldolase/adducin domain protein; PDBTitle: crystal structure of aldolase ii superfamily protein from pseudomonas2 syringae Phyre2 PDB 2opi chain B Region: 6 - 261 Aligned: 202 Modelled: 227 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron Phyre2 PDB 2z7b chain A Region: 10 - 272 Aligned: 217 Modelled: 236 Confidence: 100.0% Identity: 18% PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase Phyre2 PDB 1k0w chain A Region: 11 - 262 Aligned: 202 Modelled: 225 Confidence: 100.0% Identity: 16% Fold: AraD/HMP-PK domain-like Superfamily: AraD/HMP-PK domain-like Family: AraD-like aldolase/epimerase Phyre2 PDB 2fk5 chain B Region: 7 - 246 Aligned: 183 Modelled: 211 Confidence: 100.0% Identity: 25% PDB header:lyase Chain: B: PDB Molecule:fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from thermus2 thermophilus hb8 Phyre2 PDB 2irp chain A Region: 7 - 244 Aligned: 193 Modelled: 203 Confidence: 100.0% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:putative aldolase class 2 protein aq_1979; PDBTitle: crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979)2 from aquifex aeolicus vf5 Phyre2 PDB 3m4r chain A Region: 10 - 240 Aligned: 183 Modelled: 198 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of the n-terminal class ii aldolase domain of a conserved2 protein from thermoplasma acidophilum Phyre2 PDB 1w9y chain A domain 1 Region: 178 - 214 Aligned: 37 Modelled: 37 Confidence: 61.5% Identity: 8% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 PDB 1gp6 chain A Region: 179 - 231 Aligned: 51 Modelled: 53 Confidence: 59.9% Identity: 10% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 PDB 3on7 chain C Region: 179 - 231 Aligned: 48 Modelled: 50 Confidence: 49.8% Identity: 2% PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution Phyre2 PDB 1dcs chain A Region: 179 - 231 Aligned: 51 Modelled: 53 Confidence: 48.0% Identity: 10% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 PDB 1odm chain A Region: 179 - 214 Aligned: 36 Modelled: 36 Confidence: 46.5% Identity: 11% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 PDB 1euc chain B domain 2 Region: 179 - 231 Aligned: 52 Modelled: 53 Confidence: 39.1% Identity: 13% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: Succinyl-CoA synthetase, beta-chain, N-terminal domain Phyre2 PDB 2yzt chain A Region: 213 - 231 Aligned: 19 Modelled: 19 Confidence: 32.5% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 Phyre2 PDB 1nz8 chain A Region: 245 - 265 Aligned: 21 Modelled: 21 Confidence: 29.6% Identity: 19% Fold: Ferredoxin-like Superfamily: N-utilization substance G protein NusG, N-terminal domain Family: N-utilization substance G protein NusG, N-terminal domain Phyre2 PDB 1gjj chain A domain 2 Region: 247 - 267 Aligned: 21 Modelled: 21 Confidence: 28.0% Identity: 24% Fold: LEM/SAP HeH motif Superfamily: LEM domain Family: LEM domain Phyre2 PDB 3oox chain A Region: 180 - 214 Aligned: 35 Modelled: 35 Confidence: 25.8% Identity: 3% PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution Phyre2 1 d1ojra_ 2 d1pvta_ 3 d1e4cp_ 4 c3ocrA_ 5 c2opiB_ 6 c2z7bA_ 7 d1k0wa_ 8 c2fk5B_ 9 c2irpA_ 10 c3m4rA_ 11 d1w9ya1 12 d1gp6a_ 13 c3on7C_ 14 d1dcsa_ 15 d1odma_ 16 d1eucb2 17 c2yztA_ 18 d1nz8a_ 19 d1gjja2 20 c3ooxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ojra_ 100.0 100 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 2 d1pvta_ 100.0 24 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 3 d1e4cp_ 100.0 19 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 4 c3ocrA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:class ii aldolase/adducin domain protein; PDBTitle: crystal structure of aldolase ii superfamily protein from pseudomonas2 syringae 5 c2opiB_ 100.0 20 PDB header:lyase Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron 6 c2z7bA_ 100.0 18 PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase 7 d1k0wa_ 100.0 16 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 8 c2fk5B_ 100.0 25 PDB header:lyase Chain: B: PDB Molecule:fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from thermus2 thermophilus hb8 9 c2irpA_ 100.0 17 PDB header:lyase Chain: A: PDB Molecule:putative aldolase class 2 protein aq_1979; PDBTitle: crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979)2 from aquifex aeolicus vf5 10 c3m4rA_ 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of the n-terminal class ii aldolase domain of a conserved2 protein from thermoplasma acidophilum 11 d1w9ya1 61.5 8 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 12 d1gp6a_ 59.9 10 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 13 c3on7C_ 49.8 2 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 14 d1dcsa_ 48.0 10 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 15 d1odma_ 46.5 11 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 16 d1eucb2 39.1 13 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Succinyl-CoA synthetase, beta-chain, N-terminal domain 17 c2yztA_ 32.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 18 d1nz8a_ 29.6 19 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 19 d1gjja2 28.0 24 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 20 c3ooxA_ 25.8 3 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 21 c3p45F_ not modelled 20.1 23 PDB header:hydrolase Chain: F: PDB Molecule:caspase-6; PDBTitle: crystal structure of apo-caspase-6 at physiological ph 22 d2odgc1 not modelled 19.1 31 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 23 d1jeia_ not modelled 18.7 24 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 24 d1luaa2 not modelled 17.8 11 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Methylene-tetrahydromethanopterin dehydrogenase 25 c2h51B_ not modelled 17.6 23 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-1; PDBTitle: crystal structure of human caspase-1 (glu390->asp and arg286->lys) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk) 26 d2pw6a1 not modelled 17.2 15 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 27 c2pmzV_ not modelled 16.8 20 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 28 d1dzfa2 not modelled 16.5 28 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 29 d1wi9a_ not modelled 16.1 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 30 c2c1eB_ not modelled 15.8 31 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-3 subunit p12; PDBTitle: crystal structures of caspase-3 in complex with aza-peptide michael2 acceptor inhibitors. 31 c2ra9A_ not modelled 15.4 23 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein duf1285; PDBTitle: crystal structure of a duf1285 family protein (sbal_2486) from2 shewanella baltica os155 at 1.40 a resolution 32 c2p2cD_ not modelled 15.0 15 PDB header:hydrolase Chain: D: PDB Molecule:caspase-2; PDBTitle: inhibition of caspase-2 by a designed ankyrin repeat2 protein (darpin) 33 c2qs0A_ not modelled 14.1 5 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 34 d1hmja_ not modelled 14.0 22 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 35 c3sipB_ not modelled 14.0 31 PDB header:hydrolase/ligase/hydrolase Chain: B: PDB Molecule:caspase; PDBTitle: crystal structure of drice and diap1-bir1 complex 36 d1eika_ not modelled 13.7 17 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 37 c2c2zB_ not modelled 13.6 17 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-8 p10 subunit; PDBTitle: crystal structure of caspase-8 in complex with aza-peptide michael2 acceptor inhibitor 38 d1j5ua_ not modelled 13.4 25 Fold:MTH1598-like Superfamily:MTH1598-like Family:MTH1598-like 39 d2bfdb2 not modelled 13.4 10 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 40 d1h9fa_ not modelled 12.9 24 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 41 d2d6fa1 not modelled 12.7 8 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 42 c3fmyA_ not modelled 12.6 17 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 43 c2qljB_ not modelled 12.4 38 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-7; PDBTitle: crystal structure of caspase-7 with inhibitor ac-wehd-cho 44 d1e0fi_ not modelled 11.3 30 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like 45 c1e0fI_ not modelled 11.3 30 PDB header:coagulation/crystal structure/heparin-b Chain: I: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 46 c3b1qD_ not modelled 11.3 26 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 47 d1ikpa2 not modelled 11.1 27 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:ADP-ribosylating toxins 48 c1eucB_ not modelled 11.1 17 PDB header:ligase Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain; PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase 49 d1jw3a_ not modelled 10.8 31 Fold:MTH1598-like Superfamily:MTH1598-like Family:MTH1598-like 50 d1wzua1 not modelled 10.7 0 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 51 c1e0fJ_ not modelled 10.7 30 PDB header:coagulation/crystal structure/heparin-b Chain: J: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 52 d1m1ha2 not modelled 10.7 22 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 53 c3r1fO_ not modelled 10.7 16 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 54 c3kv4A_ not modelled 10.5 4 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 55 c3s6bA_ not modelled 10.4 26 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of methionine aminopeptidase 1b from plasmodium2 falciparum, pf10_0150 56 d1dwka1 not modelled 10.4 9 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Cyanase N-terminal domain 57 d2nu7b2 not modelled 10.2 9 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Succinyl-CoA synthetase, beta-chain, N-terminal domain 58 d1ig4a_ not modelled 10.2 9 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 59 d1kx5b_ not modelled 10.0 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 60 d1gvfa_ not modelled 9.9 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 61 d1alna1 not modelled 9.6 29 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 62 d1qk9a_ not modelled 9.5 13 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 63 c2nu9E_ not modelled 9.4 11 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 64 d1w85b2 not modelled 9.3 18 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 65 c1e0fK_ not modelled 9.1 30 PDB header:coagulation/crystal structure/heparin-b Chain: K: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 66 d1u5tb1 not modelled 8.9 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 67 c3pvjB_ not modelled 8.6 10 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 68 c2ky8A_ not modelled 8.6 23 PDB header:transcription/dna Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence 69 c2z5wA_ not modelled 8.5 18 PDB header:structural protein Chain: A: PDB Molecule:bcla protein; PDBTitle: tbcla, a recombinant spore surface protein from bacillus anthracis 70 c3h02F_ not modelled 8.5 12 PDB header:lyase Chain: F: PDB Molecule:naphthoate synthase; PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium. 71 d1zq1c2 not modelled 8.2 22 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 72 c3ju3A_ not modelled 8.2 6 PDB header:oxidoreductase Chain: A: PDB Molecule:probable 2-oxoacid ferredoxin oxidoreductase, alpha chain; PDBTitle: crystal structure of alpha chain of probable 2-oxoacid ferredoxin2 oxidoreductase from thermoplasma acidophilum 73 c3ox4D_ not modelled 8.0 12 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor 74 d2a6aa2 not modelled 7.9 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 75 d1ub1a_ not modelled 7.9 22 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 76 d1rrma_ not modelled 7.8 18 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 77 d1uasa1 not modelled 7.8 19 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 78 d1o2da_ not modelled 7.5 12 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 79 d1a9xa5 not modelled 7.3 25 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 80 d2huec1 not modelled 7.3 19 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 81 c3q94B_ not modelled 7.2 14 PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii; PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor' 82 d1rvga_ not modelled 7.0 8 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 83 d2d6fc2 not modelled 6.9 22 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 84 c1v8gB_ not modelled 6.6 11 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 85 c1wckA_ not modelled 6.6 18 PDB header:structural protein Chain: A: PDB Molecule:bcla protein; PDBTitle: crystal structure of the c-terminal domain of bcla, the2 major antigen of the exosporium of the bacillus anthracis3 spore. 86 c3p04A_ not modelled 6.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 87 c1w7vD_ not modelled 6.5 25 PDB header:hydrolase Chain: D: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: znmg substituted aminopeptidase p from e. coli 88 c3a1yF_ not modelled 6.5 20 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex 89 c1olsB_ not modelled 6.4 10 PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: roles of his291-alpha and his146-beta' in the reductive2 acylation reaction catalyzed by human branched-chain3 alpha-ketoacid dehydrogenase 90 c3p04B_ not modelled 6.3 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 91 d1hzda_ not modelled 6.2 20 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 92 c3h0gE_ not modelled 6.1 20 PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 93 c3q2oB_ not modelled 6.0 10 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit; PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase 94 d1hj3a1 not modelled 5.8 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 95 d1b4ub_ not modelled 5.8 13 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 96 c2qlcC_ not modelled 5.7 10 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein radc homolog; PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls 97 d2d69a1 not modelled 5.6 16 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 98 c3bfjK_ not modelled 5.5 12 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 99 c2k06A_ not modelled 5.4 28 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0