Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	C	K	T	L	T	A	A	A	A	V	L	L	M	L	T	A	G	C	S	T	L	E	R	V	V	Y	R	P	D	I	N	Q	G	N	Y	L	T	A	N	D	V	S	K	I	R	V	G	M	T	Q	Q	Q	V	A	Y	A	L	G
Secondary structure
SS confidence
Disorder		?	?	?															?		?	?		?	?	?	?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Sequence		T	P	L	M	S	D	P	F	G	T	N	T	W	F	Y	V	F	R	Q	Q	P	G	H	E	G	V	T	Q	Q	T	L	T	L	T	F	N	S	S	G	V	L	T	N	I	D	N	K	P	A	L	S	G	N
Secondary structure
SS confidence
Disorder						?	?	?														?	?	?	?																							?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kxx chain A Region: 18 - 113 Aligned: 96 Modelled: 96 Confidence: 100.0% Identity: 97% PDB header:protein binding Chain: A: PDB Molecule:small protein a; PDBTitle: nmr structure of escherichia coli bame, a lipoprotein component of the2 beta-barrel assembly machinery complex Phyre2 PDB 2pxg chain A Region: 17 - 111 Aligned: 90 Modelled: 95 Confidence: 99.9% Identity: 30% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein; PDBTitle: nmr solution structure of omla Phyre2 PDB 3d4e chain A Region: 38 - 106 Aligned: 68 Modelled: 69 Confidence: 97.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative beta-lactamase inhibitor protein; PDBTitle: crystal structure of putative beta-lactamase inhibitor protein2 (np_721579.1) from streptococcus mutans at 1.40 a resolution Phyre2 PDB 2g2u chain B domain 1 Region: 38 - 111 Aligned: 72 Modelled: 74 Confidence: 97.0% Identity: 21% Fold: BLIP-like Superfamily: beta-lactamase-inhibitor protein, BLIP Family: beta-lactamase-inhibitor protein, BLIP Phyre2 PDB 3gmv chain X Region: 38 - 60 Aligned: 23 Modelled: 23 Confidence: 88.6% Identity: 30% PDB header:protein binding Chain: X: PDB Molecule:beta-lactamase inhibitory protein blip-i; PDBTitle: crystal structure of beta-lactamse inhibitory protein-i2 (blip-i) in apo form Phyre2 PDB 3gmx chain B Region: 38 - 75 Aligned: 38 Modelled: 38 Confidence: 88.3% Identity: 21% PDB header:protein binding Chain: B: PDB Molecule:blp; PDBTitle: crystal structure of beta-lactamse inhibitory protein-like2 protein (blp) at 1.05 angstrom resolution Phyre2 PDB 1uw4 chain A Region: 43 - 97 Aligned: 49 Modelled: 55 Confidence: 54.9% Identity: 14% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Smg-4/UPF3 Phyre2 PDB 2o1u chain A Region: 48 - 68 Aligned: 21 Modelled: 21 Confidence: 37.7% Identity: 38% PDB header:chaperone Chain: A: PDB Molecule:endoplasmin; PDBTitle: structure of full length grp94 with amp-pnp bound Phyre2 PDB 3fmy chain A Region: 37 - 60 Aligned: 24 Modelled: 24 Confidence: 23.2% Identity: 21% PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) Phyre2 PDB 2vgp chain D Region: 30 - 71 Aligned: 42 Modelled: 42 Confidence: 19.7% Identity: 17% PDB header:transferase Chain: D: PDB Molecule:inner centromere protein a; PDBTitle: crystal structure of aurora b kinase in complex with a2 aminothiazole inhibitor Phyre2 PDB 2cwq chain A domain 1 Region: 2 - 59 Aligned: 41 Modelled: 40 Confidence: 19.2% Identity: 17% Fold: AhpD-like Superfamily: AhpD-like Family: TTHA0727-like Phyre2 PDB 2qeu chain A Region: 2 - 59 Aligned: 41 Modelled: 41 Confidence: 18.3% Identity: 7% PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution Phyre2 PDB 1vli chain A Region: 27 - 67 Aligned: 41 Modelled: 41 Confidence: 17.8% Identity: 15% PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution Phyre2 PDB 1vqo chain P domain 1 Region: 13 - 59 Aligned: 36 Modelled: 47 Confidence: 17.0% Identity: 11% Fold: Ribosomal protein L19 (L19e) Superfamily: Ribosomal protein L19 (L19e) Family: Ribosomal protein L19 (L19e) Phyre2 PDB 2qqr chain A domain 1 Region: 69 - 98 Aligned: 27 Modelled: 30 Confidence: 17.0% Identity: 22% Fold: SH3-like barrel Superfamily: Tudor/PWWP/MBT Family: Tudor domain Phyre2 PDB 2wwa chain J Region: 13 - 59 Aligned: 36 Modelled: 47 Confidence: 16.8% Identity: 17% PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome Phyre2 PDB 2cg9 chain A Region: 48 - 67 Aligned: 20 Modelled: 20 Confidence: 16.6% Identity: 35% PDB header:chaperone Chain: A: PDB Molecule:atp-dependent molecular chaperone hsp82; PDBTitle: crystal structure of an hsp90-sba1 closed chaperone complex Phyre2 PDB 4a1c chain O Region: 13 - 59 Aligned: 36 Modelled: 47 Confidence: 16.0% Identity: 17% PDB header:ribosome Chain: O: PDB Molecule:rpl19; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 PDB 2af7 chain A domain 1 Region: 2 - 59 Aligned: 41 Modelled: 40 Confidence: 15.6% Identity: 15% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 PDB 3gn5 chain B Region: 35 - 60 Aligned: 26 Modelled: 26 Confidence: 15.2% Identity: 19% PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) Phyre2 1 c2kxxA_ 2 c2pxgA_ 3 c3d4eA_ 4 d2g2ub1 5 c3gmvX_ 6 c3gmxB_ 7 d1uw4a_ 8 c2o1uA_ 9 c3fmyA_ 10 c2vgpD_ 11 d2cwqa1 12 c2qeuA_ 13 c1vliA_ 14 d1vqop1 15 d2qqra1 16 c2wwaJ_ 17 c2cg9A_ 18 c4a1cO_ 19 d2af7a1 20 c3gn5B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kxxA_ 100.0 97 PDB header:protein binding Chain: A: PDB Molecule:small protein a; PDBTitle: nmr structure of escherichia coli bame, a lipoprotein component of the2 beta-barrel assembly machinery complex 2 c2pxgA_ 99.9 30 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein; PDBTitle: nmr solution structure of omla 3 c3d4eA_ 97.8 18 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-lactamase inhibitor protein; PDBTitle: crystal structure of putative beta-lactamase inhibitor protein2 (np_721579.1) from streptococcus mutans at 1.40 a resolution 4 d2g2ub1 97.0 21 Fold:BLIP-like Superfamily:beta-lactamase-inhibitor protein, BLIP Family:beta-lactamase-inhibitor protein, BLIP 5 c3gmvX_ 88.6 30 PDB header:protein binding Chain: X: PDB Molecule:beta-lactamase inhibitory protein blip-i; PDBTitle: crystal structure of beta-lactamse inhibitory protein-i2 (blip-i) in apo form 6 c3gmxB_ 88.3 21 PDB header:protein binding Chain: B: PDB Molecule:blp; PDBTitle: crystal structure of beta-lactamse inhibitory protein-like2 protein (blp) at 1.05 angstrom resolution 7 d1uw4a_ 54.9 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Smg-4/UPF3 8 c2o1uA_ 37.7 38 PDB header:chaperone Chain: A: PDB Molecule:endoplasmin; PDBTitle: structure of full length grp94 with amp-pnp bound 9 c3fmyA_ 23.2 21 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 10 c2vgpD_ 19.7 17 PDB header:transferase Chain: D: PDB Molecule:inner centromere protein a; PDBTitle: crystal structure of aurora b kinase in complex with a2 aminothiazole inhibitor 11 d2cwqa1 19.2 17 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 12 c2qeuA_ 18.3 7 PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution 13 c1vliA_ 17.8 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 14 d1vqop1 17.0 11 Fold:Ribosomal protein L19 (L19e) Superfamily:Ribosomal protein L19 (L19e) Family:Ribosomal protein L19 (L19e) 15 d2qqra1 17.0 22 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 16 c2wwaJ_ 16.8 17 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 17 c2cg9A_ 16.6 35 PDB header:chaperone Chain: A: PDB Molecule:atp-dependent molecular chaperone hsp82; PDBTitle: crystal structure of an hsp90-sba1 closed chaperone complex 18 c4a1cO_ 16.0 17 PDB header:ribosome Chain: O: PDB Molecule:rpl19; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 19 d2af7a1 15.6 15 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 20 c3gn5B_ 15.2 19 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 21 c2rfuA_ not modelled 15.1 21 PDB header:viral protein Chain: A: PDB Molecule:influenza b hemagglutinin (ha); PDBTitle: crystal structure of influenza b virus hemagglutinin in complex with2 lstc receptor analog 22 d1g3nc2 not modelled 14.6 27 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 23 c2kfsA_ not modelled 14.2 13 PDB header:dna-binding protein Chain: A: PDB Molecule:conserved hypothetical regulatory protein; PDBTitle: nmr structure of rv2175c 24 c1q40C_ not modelled 13.4 23 PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex 25 d1vlia1 not modelled 13.3 15 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 26 c2zkrp_ not modelled 12.8 19 PDB header:ribosomal protein/rna Chain: P: PDB Molecule:rna expansion segment es31 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 27 d1q42a_ not modelled 12.4 23 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 28 c3qqiB_ not modelled 11.9 26 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of the ha1 receptor binding domain of h22 hemagglutinin 29 c3mlhA_ not modelled 11.7 26 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain 30 d1jsda_ not modelled 11.7 26 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 31 d2visc_ not modelled 11.7 39 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 32 d1rd8a_ not modelled 11.6 26 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 33 c2iopD_ not modelled 11.3 47 PDB header:chaperone Chain: D: PDB Molecule:chaperone protein htpg; PDBTitle: crystal structure of full-length htpg, the escherichia coli2 hsp90, bound to adp 34 c3iz5T_ not modelled 11.1 19 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 35 d2zdra1 not modelled 11.0 22 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 36 c3eykA_ not modelled 10.7 39 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin ha1 chain; PDBTitle: structure of influenza haemagglutinin in complex with an2 inhibitor of membrane fusion 37 d1ijwc_ not modelled 10.7 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 38 d2ofya1 not modelled 10.5 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 39 d1rvxa_ not modelled 10.3 26 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 40 d1rv0h_ not modelled 10.3 26 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 41 d2ibxa1 not modelled 10.1 17 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 42 d1mqma_ not modelled 10.0 39 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 43 d2viua_ not modelled 10.0 39 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 44 d1hcra_ not modelled 9.4 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 45 d1jmca1 not modelled 9.2 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 46 c1p8cD_ not modelled 9.2 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima 47 c3i71B_ not modelled 9.0 36 PDB header:unknown function Chain: B: PDB Molecule:ethanolamine utilization protein eutk; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain 48 c2ivfA_ not modelled 8.8 6 PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 49 d1jsma_ not modelled 8.8 21 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 50 c2o1wB_ not modelled 8.8 50 PDB header:chaperone Chain: B: PDB Molecule:endoplasmin; PDBTitle: structure of n-terminal plus middle domains (n+m) of grp94 51 d1zbra1 not modelled 8.6 19 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 52 c2wr2B_ not modelled 8.5 26 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin; PDBTitle: structure of influenza h2 avian hemagglutinin with avian2 receptor 53 d1vkea_ not modelled 8.1 20 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 54 c2ppxA_ not modelled 8.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens 55 d2ppxa1 not modelled 8.0 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 56 d2hqva1 not modelled 8.0 11 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:ChuX-like 57 d1dwma_ not modelled 7.9 27 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 58 d1nr3a_ not modelled 7.9 33 Fold:DNA-binding protein Tfx Superfamily:DNA-binding protein Tfx Family:DNA-binding protein Tfx 59 c3rdyA_ not modelled 7.9 9 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:bwi-1=protease inhibitor/trypsin inhibitor; PDBTitle: crystal structure of buckwheat trypsin inhibitor rbti at 1.84 angstrom2 resolution 60 d1bw6a_ not modelled 7.6 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 61 c3ct5A_ not modelled 7.4 21 PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail 62 d1yqga1 not modelled 7.2 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 63 d2v9va2 not modelled 7.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 64 c3beyC_ not modelled 7.1 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved protein o27018; PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217 65 d1iiea_ not modelled 7.0 33 Fold:Class II MHC-associated invariant chain ectoplasmic trimerization domain Superfamily:Class II MHC-associated invariant chain ectoplasmic trimerization domain Family:Class II MHC-associated invariant chain ectoplasmic trimerization domain 66 c2ci2I_ not modelled 6.9 5 PDB header:proteinase inhibitor (chymotrypsin) Chain: I: PDB Molecule:chymotrypsin inhibitor 2; PDBTitle: crystal and molecular structure of the serine proteinase2 inhibitor ci-2 from barley seeds 67 d2snii_ not modelled 6.9 5 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 68 d1ypci_ not modelled 6.8 5 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 69 d1to2i_ not modelled 6.8 5 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 70 c2hl7A_ not modelled 6.7 6 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 71 c1ha0A_ not modelled 6.5 39 PDB header:viral protein Chain: A: PDB Molecule:protein (hemagglutinin precursor); PDBTitle: hemagglutinin precursor ha0 72 d2j0pa1 not modelled 6.2 14 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 73 d1j8ba_ not modelled 6.1 30 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 74 d1k25a2 not modelled 6.1 8 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 75 c1tinA_ not modelled 6.0 13 PDB header:serine protease inhibitor Chain: A: PDB Molecule:trypsin inhibitor v; PDBTitle: three-dimensional structure in solution of cucurbita maxima2 trypsin inhibitor-v determined by nmr spectroscopy 76 c1y4sA_ not modelled 6.0 57 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein htpg; PDBTitle: conformation rearrangement of heat shock protein 90 upon2 adp binding 77 c2kw0A_ not modelled 6.0 6 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 78 c3f6wE_ not modelled 5.9 50 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 79 c1vbwA_ not modelled 5.9 7 PDB header:protein binding Chain: A: PDB Molecule:trypsin inhibitor bgit; PDBTitle: crystal structure of bitter gourd trypsin inhibitor 80 d2ahra1 not modelled 5.7 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 81 d2ovra1 not modelled 5.7 14 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 82 c3pehB_ not modelled 5.6 43 PDB header:chaperone Chain: B: PDB Molecule:endoplasmin homolog; PDBTitle: crystal structure of the n-terminal domain of an hsp90 from plasmodium2 falciparum, pfl1070c in the presence of a thienopyrimidine derivative 83 c2eblA_ not modelled 5.5 36 PDB header:transcription Chain: A: PDB Molecule:coup transcription factor 1; PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1 84 d1pugb_ not modelled 5.5 20 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 85 c2xsdC_ not modelled 5.5 42 PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna 86 d1vkeb_ not modelled 5.5 20 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 87 d1fs2b1 not modelled 5.4 14 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 88 d1okga3 not modelled 5.4 28 Fold:FKBP-like Superfamily:FKBP-like Family:3-mercaptopyruvate sulfurtransferase, C-terminal domain 89 d2cmua1 not modelled 5.3 19 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 90 c2wstE_ not modelled 5.1 27 PDB header:viral protein Chain: E: PDB Molecule:putative fiber protein; PDBTitle: head domain of porcine adenovirus type 4 nadc-1 isolate2 fibre 91 c2qzbB_ not modelled 5.1 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yfey; PDBTitle: crystal structure of the uncharacterized protein yfey from escherichia2 coli 92 d3dxoa1 not modelled 5.1 16 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0744-like 93 c3fldA_ not modelled 5.1 29 PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: crystal structure of the trai c-terminal domain 94 c3fljA_ not modelled 5.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution 95 d2hanb1 not modelled 5.1 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 96 c3cpnA_ not modelled 5.0 13 PDB header:hydrolase Chain: A: PDB Molecule:beta-xylosidase, family 43 glycosyl hydrolase; PDBTitle: crystal structure of beta-xylosidase, family 43 glycosyl2 hydrolase from clostridium acetobutylicum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0