Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

E

N

Q

P

K

L

N

S

S

K

E

V

I

A

F

L

A

E

R

F

P

H

C

F

S

A

E

G

E

A

R

P

L

K

I

G

I

F

Q

D

L

V

D

R

V

A

G

E

M

N

L

S

K

T

Q

L

R

S

A

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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.

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120

Sequence

L

R

L

Y

T

S

S

W

R

Y

L

Y

G

V

K

P

G

A

T

R

V

D

L

D

G

N

P

C

G

E

L

D

E

Q

H

V

E

H

A

R

K

Q

L

E

E

A

K

A

R

V

Q

A

Q

R

A

E

Q

Q

A

K

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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130

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140

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150

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160

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.

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170

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.

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.

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.

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.

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180

Sequence

K

R

E

A

A

A

T

A

G

E

K

E

D

A

P

R

R

E

R

K

P

R

P

T

T

P

R

R

K

E

G

A

E

R

K

P

R

A

Q

K

P

V

E

K

A

P

K

T

V

K

A

P

R

E

E

Q

H

T

P

V

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

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?

?

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?

?

?

Disorder confidence

.

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.

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190

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200

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210

.

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.

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.

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220

.

.

.

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.

.

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.

.

230

.

.

Sequence

S

D

I

S

A

L

T

V

G

Q

A

L

K

V

K

A

G

Q

N

A

M

D

A

T

V

L

E

I

T

K

D

G

V

R

V

Q

L

N

S

G

M

S

L

I

V

R

A

E

H

L

V

F

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1dvo chain A Region: 6 - 117 Aligned: 111 Modelled: 112 Confidence: 100.0% Identity: 26% Fold: FinO-like Superfamily: FinO-like Family: FinO-like Phyre2 PDB 2hxj chain A domain 1 Region: 1 - 102 Aligned: 99 Modelled: 102 Confidence: 100.0% Identity: 21% Fold: FinO-like Superfamily: FinO-like Family: FinO-like Phyre2 PDB 2hxj chain F Region: 1 - 102 Aligned: 99 Modelled: 102 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: F: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein of unknown function nmb1681 from2 neisseria meningitidis mc58, possible nucleic acid binding protein Phyre2 PDB 2e70 chain A Region: 188 - 230 Aligned: 43 Modelled: 43 Confidence: 91.3% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 3qii chain A Region: 185 - 230 Aligned: 46 Modelled: 46 Confidence: 88.1% Identity: 20% PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 Phyre2 PDB 3p8d chain B Region: 184 - 230 Aligned: 47 Modelled: 47 Confidence: 82.0% Identity: 21% PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form) Phyre2 PDB 2in0 chain A Region: 183 - 232 Aligned: 50 Modelled: 50 Confidence: 74.3% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain Phyre2 PDB 2k8i chain A Region: 172 - 222 Aligned: 51 Modelled: 51 Confidence: 72.4% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd Phyre2 PDB 2equ chain A Region: 185 - 230 Aligned: 46 Modelled: 46 Confidence: 70.9% Identity: 20% PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 Phyre2 PDB 2qqs chain B Region: 171 - 230 Aligned: 60 Modelled: 60 Confidence: 67.8% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide Phyre2 PDB 1nxz chain A domain 1 Region: 186 - 217 Aligned: 32 Modelled: 31 Confidence: 66.8% Identity: 31% Fold: PUA domain-like Superfamily: PUA domain-like Family: YggJ N-terminal domain-like Phyre2 PDB 1zd7 chain B Region: 177 - 232 Aligned: 56 Modelled: 56 Confidence: 61.7% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: 1.7 angstrom crystal structure of post-splicing form of a dnae intein2 from synechocystis sp. pcc 6803 Phyre2 PDB 3dlm chain A Region: 183 - 220 Aligned: 38 Modelled: 38 Confidence: 61.4% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1; PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1 Phyre2 PDB 2ix0 chain A domain 3 Region: 203 - 230 Aligned: 28 Modelled: 28 Confidence: 60.8% Identity: 32% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1kk1 chain A domain 2 Region: 183 - 219 Aligned: 37 Modelled: 37 Confidence: 59.6% Identity: 19% Fold: Elongation factor/aminomethyltransferase common domain Superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Phyre2 PDB 2kfw chain A Region: 160 - 222 Aligned: 63 Modelled: 63 Confidence: 58.9% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli Phyre2 PDB 3d0f chain A Region: 201 - 232 Aligned: 32 Modelled: 32 Confidence: 57.8% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 Phyre2 PDB 1s0u chain A domain 2 Region: 183 - 217 Aligned: 35 Modelled: 35 Confidence: 56.4% Identity: 20% Fold: Elongation factor/aminomethyltransferase common domain Superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Phyre2 PDB 2qn6 chain A domain 2 Region: 184 - 217 Aligned: 34 Modelled: 34 Confidence: 55.8% Identity: 21% Fold: Elongation factor/aminomethyltransferase common domain Superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Phyre2 PDB 3bzk chain A domain 4 Region: 180 - 230 Aligned: 42 Modelled: 51 Confidence: 55.0% Identity: 24% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 1 d1dvoa_ 2 d2hxja1 3 c2hxjF_ 4 c2e70A_ 5 c3qiiA_ 6 c3p8dB_ 7 c2in0A_ 8 c2k8iA_ 9 c2equA_ 10 c2qqsB_ 11 d1nxza1 12 c1zd7B_ 13 c3dlmA_ 14 d2ix0a3 15 d1kk1a2 16 c2kfwA_ 17 c3d0fA_ 18 d1s0ua2 19 d2qn6a2 20 d3bzka4 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1dvoa_ 100.0 26 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 2 d2hxja1 100.0 21 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 3 c2hxjF_ 100.0 21 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein of unknown function nmb1681 from2 neisseria meningitidis mc58, possible nucleic acid binding protein 4 c2e70A_ 91.3 26 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 5 c3qiiA_ 88.1 20 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 6 c3p8dB_ 82.0 21 PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form) 7 c2in0A_ 74.3 20 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain 8 c2k8iA_ 72.4 20 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 9 c2equA_ 70.9 20 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 10 c2qqsB_ 67.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide 11 d1nxza1 66.8 31 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 12 c1zd7B_ 61.7 11 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: 1.7 angstrom crystal structure of post-splicing form of a dnae intein2 from synechocystis sp. pcc 6803 13 c3dlmA_ 61.4 21 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1; PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1 14 d2ix0a3 60.8 32 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 15 d1kk1a2 59.6 19 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 16 c2kfwA_ 58.9 14 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 17 c3d0fA_ 57.8 22 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 18 d1s0ua2 56.4 20 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 19 d2qn6a2 55.8 21 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 20 d3bzka4 55.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 21 d1sroa_ not modelled 54.9 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 c2xdpA_ not modelled 51.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c 23 d1at0a_ not modelled 48.5 18 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Hedgehog C-terminal (Hog) autoprocessing domain 24 c2k52A_ not modelled 47.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 25 d1kl9a2 not modelled 44.0 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 d2do3a1 not modelled 43.2 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 27 d1ib8a1 not modelled 40.9 24 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 28 d1biaa2 not modelled 38.6 15 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 29 c2kvqG_ not modelled 36.9 18 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 30 c2jvvA_ not modelled 36.9 18 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 31 d1vqoq1 not modelled 36.7 29 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 32 d1kk8a1 not modelled 35.7 13 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 33 d1whma_ not modelled 33.5 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 34 c2khiA_ not modelled 32.8 20 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 35 c2keqA_ not modelled 31.8 9 PDB header:splicing Chain: A: PDB Molecule:dna polymerase iii alpha subunit, nucleic acid PDBTitle: solution structure of dnae intein from nostoc punctiforme 36 c2khjA_ not modelled 31.8 24 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 37 c3p8bB_ not modelled 30.0 25 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 38 d1nppa2 not modelled 29.5 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 39 c2ix1A_ not modelled 28.4 33 PDB header:hydrolase Chain: A: PDB Molecule:exoribonuclease 2; PDBTitle: rnase ii d209n mutant 40 c2hbpA_ not modelled 28.3 24 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 41 c3q9qB_ not modelled 26.6 19 PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form 42 d1wgka_ not modelled 26.6 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 43 c1ssfA_ not modelled 26.4 9 PDB header:cell cycle Chain: A: PDB Molecule:transformation related protein 53 binding PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617) 44 c1zeqX_ not modelled 25.9 17 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 45 c2egwB_ not modelled 25.5 9 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 46 c2ckkA_ not modelled 25.1 16 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 47 c2cghB_ not modelled 24.9 12 PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis 48 c1vhkA_ not modelled 24.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 49 c2imzA_ not modelled 23.9 18 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain 50 d1nz9a_ not modelled 23.4 29 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 51 c2eayB_ not modelled 23.0 21 PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus 52 d1mi8a_ not modelled 23.0 16 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Intein (protein splicing domain) 53 c1kl9A_ not modelled 21.3 26 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 subunit 1; PDBTitle: crystal structure of the n-terminal segment of human eukaryotic2 initiation factor 2alpha 54 d2ba0a1 not modelled 20.9 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 55 c3kw2A_ not modelled 20.8 18 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 56 c1ywuA_ not modelled 20.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa4608; PDBTitle: solution nmr structure of pseudomonas aeruginosa protein pa4608.2 northeast structural genomics target pat7 57 d1ywua1 not modelled 20.3 9 Fold:Split barrel-like Superfamily:PilZ domain-like Family:PilZ domain 58 d2rdea1 not modelled 20.1 17 Fold:Split barrel-like Superfamily:PilZ domain-like Family:PilZ domain 59 d2z0sa1 not modelled 20.0 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 60 c2wj7D_ not modelled 19.8 14 PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin 61 d2i5ua1 not modelled 19.8 10 Fold:DnaD domain-like Superfamily:DnaD domain-like Family:DnaD domain 62 c2kr7A_ not modelled 19.8 16 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 63 d1vhka1 not modelled 19.6 13 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 64 d1q46a2 not modelled 18.9 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 65 d1alla_ not modelled 18.8 26 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 66 d2je6i1 not modelled 18.3 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 67 c2d7gD_ not modelled 18.1 15 PDB header:hydrolase Chain: D: PDB Molecule:primosomal protein n; PDBTitle: crystal structure of the aa complex of the n-terminal2 domain of pria 68 c2l1tA_ not modelled 17.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of the n-terminal domain of np_954075.1 69 c2ej9A_ not modelled 17.6 21 PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii 70 c2ewnA_ not modelled 17.5 14 PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog 71 c2kq6A_ not modelled 17.2 26 PDB header:transport protein Chain: A: PDB Molecule:polycystin-2; PDBTitle: the structure of the ef-hand domain of polycystin-2 suggests a2 mechanism for ca2+-dependent regulation of polycystin-2 channel3 activity 72 d2nn6h1 not modelled 16.2 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 73 d1go3e1 not modelled 16.1 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 c1xniI_ not modelled 15.8 13 PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 75 c2zrrA_ not modelled 15.3 25 PDB header:antimicrobial protein Chain: A: PDB Molecule:mundticin ks immunity protein; PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a 76 d1ixda_ not modelled 15.0 21 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 77 c1i84V_ not modelled 14.9 23 PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment. 78 d1b33a_ not modelled 14.8 22 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 79 c2jkuA_ not modelled 14.6 18 PDB header:ligase Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase 80 c3a8jF_ not modelled 14.6 0 PDB header:transferase/transport protein Chain: F: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of et-ehred complex 81 c3mxuA_ not modelled 14.5 31 PDB header:oxidoreductase Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae 82 c3iftA_ not modelled 14.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source. 83 d1cpcb_ not modelled 13.8 22 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 84 c3cgnA_ not modelled 13.6 22 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 85 d1br2a1 not modelled 13.3 25 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 86 d2ghra1 not modelled 13.2 42 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 87 c1v1hB_ not modelled 13.0 19 PDB header:adenovirus Chain: B: PDB Molecule:fibritin, fiber protein; PDBTitle: adenovirus fibre shaft sequence n-terminally fused to the2 bacteriophage t4 fibritin foldon trimerisation motif with3 a short linker 88 d1gmea_ not modelled 12.8 32 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20 89 d1kn1a_ not modelled 12.4 26 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 90 c2qjlA_ not modelled 12.2 16 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 91 c2zkrq_ not modelled 12.0 21 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 92 c3aabA_ not modelled 11.9 23 PDB header:chaperone Chain: A: PDB Molecule:putative uncharacterized protein st1653; PDBTitle: small heat shock protein hsp14.0 with the mutations of i120f and i122f2 in the form i crystal 93 c1br4E_ not modelled 11.8 23 PDB header:muscle protein Chain: E: PDB Molecule:myosin; PDBTitle: smooth muscle myosin motor domain-essential light chain2 complex with mgadp.bef3 bound at the active site 94 d1hpca_ not modelled 11.7 15 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 95 d1xo3a_ not modelled 11.6 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 96 c1vdeA_ not modelled 11.3 20 PDB header:endonuclease Chain: A: PDB Molecule:pi-scei; PDBTitle: pi-scei, a homing endonuclease with protein splicing2 activity 97 c1vftA_ not modelled 11.1 31 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae 98 d1dq3a1 not modelled 11.0 11 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Intein (protein splicing domain) 99 d2h50a1 not modelled 10.8 32 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0