Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP38038
DateThu Jan 5 11:57:50 GMT 2012
Unique Job IDd7f1a05969a0a7e4

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1j9zB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
Confidence and coverage
Confidence:100.0% Coverage: 90%
538 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAE
Secondary structure 
SS confidence 
Disorder  ?????????????
???
?
???????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQG
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  EGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERL
Secondary structure 
SS confidence 
Disorder 
????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVAS
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LSVNQKITGRNSEKDVRHIEIDLGDSGMRYQPGDALGVWYQNDPALVKELVELLWLKGDE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  PVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPI
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  VDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGG
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  ASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELW
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........
Sequence  RWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
Secondary structure 
SS confidence 
Disorder 
??
???
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1j9z chain B

3D model

Region: 59 - 599
Aligned: 538
Modelled: 540
Confidence: 100.0%
Identity: 33%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g

Phyre2

PDB 2bpo chain A

3D model

Region: 60 - 599
Aligned: 537
Modelled: 540
Confidence: 100.0%
Identity: 32%
PDB header:reductase
Chain: A: PDB Molecule:nadph-cytochrom p450 reductase;
PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a.

Phyre2

PDB 1tll chain A

3D model

Region: 59 - 599
Aligned: 538
Modelled: 541
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.

Phyre2

PDB 1ddi chain A

3D model

Region: 226 - 599
Aligned: 374
Modelled: 374
Confidence: 100.0%
Identity: 99%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha-
PDBTitle: crystal structure of sir-fp60

Phyre2

PDB 3qft chain A

3D model

Region: 217 - 599
Aligned: 380
Modelled: 383
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph--cytochrome p450 reductase;
PDBTitle: crystal structure of nadph-cytochrome p450 reductase (fad/nadph domain2 and r457h mutant)

Phyre2

PDB 2qtz chain A

3D model

Region: 205 - 599
Aligned: 395
Modelled: 395
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine synthase reductase;
PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase

Phyre2

PDB 1f20 chain A

3D model

Region: 230 - 599
Aligned: 368
Modelled: 370
Confidence: 100.0%
Identity: 35%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution.

Phyre2

PDB 1jb9 chain A

3D model

Region: 216 - 599
Aligned: 285
Modelled: 293
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms

Phyre2

PDB 2rc5 chain D

3D model

Region: 231 - 599
Aligned: 276
Modelled: 283
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: D: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: refined structure of fnr from leptospira interrogans

Phyre2

PDB 1ddg chain A domain 1

3D model

Region: 226 - 446
Aligned: 221
Modelled: 221
Confidence: 100.0%
Identity: 100%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin synthase domain-like
Family: NADPH-cytochrome p450 reductase FAD-binding domain-like

Phyre2

PDB 2b5o chain A

3D model

Region: 226 - 599
Aligned: 275
Modelled: 281
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: ferredoxin-nadp reductase

Phyre2

PDB 1fnc chain A

3D model

Region: 219 - 599
Aligned: 280
Modelled: 288
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase (nadp+(a),ferredoxin(a))
Chain: A: PDB Molecule:ferredoxin-nadp+ reductase;
PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states

Phyre2

PDB 1qgy chain A

3D model

Region: 225 - 599
Aligned: 275
Modelled: 282
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp+ reductase;
PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e)

Phyre2

PDB 1ja1 chain A domain 1

3D model

Region: 217 - 445
Aligned: 226
Modelled: 229
Confidence: 100.0%
Identity: 28%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin synthase domain-like
Family: NADPH-cytochrome p450 reductase FAD-binding domain-like

Phyre2

PDB 1f20 chain A domain 1

3D model

Region: 230 - 443
Aligned: 213
Modelled: 214
Confidence: 100.0%
Identity: 29%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin synthase domain-like
Family: NADPH-cytochrome p450 reductase FAD-binding domain-like

Phyre2

PDB 3hr4 chain C

3D model

Region: 59 - 222
Aligned: 162
Modelled: 164
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex

Phyre2

PDB 1ja1 chain A domain 2

3D model

Region: 59 - 217
Aligned: 158
Modelled: 159
Confidence: 100.0%
Identity: 26%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Cytochrome p450 reductase N-terminal domain-like

Phyre2

PDB 1ddg chain A domain 2

3D model

Region: 447 - 599
Aligned: 153
Modelled: 153
Confidence: 100.0%
Identity: 99%
Fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
Family: NADPH-cytochrome p450 reductase-like

Phyre2

PDB 1tll chain A domain 2

3D model

Region: 59 - 215
Aligned: 156
Modelled: 157
Confidence: 100.0%
Identity: 33%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Cytochrome p450 reductase N-terminal domain-like

Phyre2

PDB 1ja1 chain A domain 3

3D model

Region: 446 - 599
Aligned: 154
Modelled: 154
Confidence: 100.0%
Identity: 47%
Fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
Family: NADPH-cytochrome p450 reductase-like

Phyre2

PDB 1m5x chain A

3D model

Region: 27 - 42
Aligned: 16
Modelled: 16
Confidence: 56.5%
Identity: 38%
Fold: Homing endonuclease-like
Superfamily: Homing endonucleases
Family: Group I mobile intron endonuclease

Phyre2

PDB 3fd2 chain A

3D model

Region: 27 - 42
Aligned: 16
Modelled: 16
Confidence: 56.1%
Identity: 38%
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna endonuclease i-msoi, linker, dna endonuclease i-msoi;
PDBTitle: crystal structure of mmsoi/dna complex with calcium

Phyre2
1
c1j9zB_
2
c2bpoA_
3
c1tllA_
4
c1ddiA_
5
c3qftA_
6
c2qtzA_
7
c1f20A_
8
c1jb9A_
9
c2rc5D_
10
d1ddga1
11
c2b5oA_
12
c1fncA_
13
c1qgyA_
14
d1ja1a1
15
d1f20a1
16
c3hr4C_
17
d1ja1a2
18
d1ddga2
19
d1tlla2
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d1ja1a3
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153
154
155
156
d1m5xa_
157
c3fd2A_
158
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162
163
164
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168
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1j9zB_
100.0 33 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
2c2bpoA_
100.0 32 PDB header:reductase
Chain: A: PDB Molecule:nadph-cytochrom p450 reductase;
PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a.
3c1tllA_
100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
4c1ddiA_
100.0 99 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha-
PDBTitle: crystal structure of sir-fp60
5c3qftA_
100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph--cytochrome p450 reductase;
PDBTitle: crystal structure of nadph-cytochrome p450 reductase (fad/nadph domain2 and r457h mutant)
6c2qtzA_
100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine synthase reductase;
PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase
7c1f20A_
100.0 35 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution.
8c1jb9A_
100.0 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms
9c2rc5D_
100.0 26 PDB header:oxidoreductase
Chain: D: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: refined structure of fnr from leptospira interrogans
10d1ddga1
100.0 100 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
11c2b5oA_
100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: ferredoxin-nadp reductase
12c1fncA_
100.0 31 PDB header:oxidoreductase (nadp+(a),ferredoxin(a))
Chain: A: PDB Molecule:ferredoxin-nadp+ reductase;
PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states
13c1qgyA_
100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp+ reductase;
PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e)
14d1ja1a1
100.0 28 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
15d1f20a1
100.0 29 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
16c3hr4C_
100.0 30 PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
17d1ja1a2
100.0 26 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
18d1ddga2
100.0 99 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:NADPH-cytochrome p450 reductase-like
19d1tlla2
100.0 33 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
20d1ja1a3
100.0 47 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:NADPH-cytochrome p450 reductase-like
21c2ok8D_
not modelled 100.0 27 PDB header:oxidoreductase
Chain: D: PDB Molecule:putative ferredoxin--nadp reductase;
PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum
22d1b1ca_
not modelled 100.0 26 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
23d1f20a2
not modelled 100.0 43 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:NADPH-cytochrome p450 reductase-like
24d1ykga1
not modelled 100.0 99 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
25c1bvyF_
not modelled 100.0 19 PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
26d1bvyf_
not modelled 100.0 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
27d1jb9a2
not modelled 100.0 38 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
28d1fnda2
not modelled 100.0 34 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
29d1gawa2
not modelled 100.0 33 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
30d2bmwa2
not modelled 100.0 33 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
31d1sm4a2
not modelled 100.0 33 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
32c1krhA_
not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray stucture of benzoate dioxygenase reductase
33d1qfza2
not modelled 100.0 34 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
34c1cqxB_
not modelled 100.0 20 PDB header:lipid binding protein
Chain: B: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution
35c2hnbA_
not modelled 100.0 25 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
36c1gvhA_
not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoprotein;
PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket
37d1jb9a1
not modelled 99.9 27 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
38c2r6hC_
not modelled 99.9 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f
PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis
39c2eixA_
not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-cytochrome b5 reductase;
PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase
40c2bgjB_
not modelled 99.9 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase;
PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms
41d1qfza1
not modelled 99.9 28 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
42d1yoba1
not modelled 99.9 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
43c1a8pA_
not modelled 99.9 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase;
PDBTitle: ferredoxin reductase from azotobacter vinelandii
44d1f4pa_
not modelled 99.9 24 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
45c1qfjD_
not modelled 99.9 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:protein (flavin reductase);
PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli
46c3f6sI_
not modelled 99.9 22 PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
47c1umkA_
not modelled 99.9 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-cytochrome b5 reductase;
PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase
48c1tvcA_
not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase component c;
PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath)
49c2wc1A_
not modelled 99.9 20 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
50d2fcra_
not modelled 99.9 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
51c3fpkB_
not modelled 99.9 19 PDB header:flavoprotein, oxidoreductase
Chain: B: PDB Molecule:ferredoxin-nadp reductase;
PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium
52d1czna_
not modelled 99.9 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
53c1ep3B_
not modelled 99.9 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
54d1ag9a_
not modelled 99.9 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
55d1oboa_
not modelled 99.9 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
56d1rlja_
not modelled 99.9 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavoprotein NrdI
57c1cneA_
not modelled 99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrate reductase;
PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain
58c2piaA_
not modelled 99.9 23 PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
59d1fuea_
not modelled 99.9 24 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
60c2x2oA_
not modelled 99.9 20 PDB header:flavoprotein
Chain: A: PDB Molecule:nrdi protein;
PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state
61d1gawa1
not modelled 99.8 28 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
62c3n39D_
not modelled 99.8 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:protein nrdi;
PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi
63d1tvca2
not modelled 99.8 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
64d1sm4a1
not modelled 99.8 26 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
65d1fdra2
not modelled 99.8 16 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
66d1qfja2
not modelled 99.8 16 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
67d1a8pa2
not modelled 99.8 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
68d1cqxa3
not modelled 99.7 14 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Flavohemoglobin, C-terminal domain
69d1umka2
not modelled 99.7 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
70d1krha2
not modelled 99.7 21 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
71d1gvha3
not modelled 99.7 14 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Flavohemoglobin, C-terminal domain
72d2bmwa1
not modelled 99.7 26 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
73d5nula_
not modelled 99.7 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
74d2fz5a1
not modelled 99.7 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
75d2piaa2
not modelled 99.7 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
76d2cnda2
not modelled 99.7 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
77d1fnda1
not modelled 99.7 29 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
78d1qx4a2
not modelled 99.7 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
79d1ndha2
not modelled 99.6 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
80c3hlyA_
not modelled 99.6 15 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
81d1e5da1
not modelled 99.5 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
82c2gpjA_
not modelled 99.5 15 PDB header:fad-binding protein
Chain: A: PDB Molecule:siderophore-interacting protein;
PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution
83d1ep3b2
not modelled 99.5 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Dihydroorotate dehydrogenase B, PyrK subunit
84d1vmea1
not modelled 99.5 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
85c1vmeB_
not modelled 99.5 19 PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
86c2ohiB_
not modelled 99.5 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
87c3a1fA_
not modelled 99.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b-245 heavy chain;
PDBTitle: the crystal structure of nadph binding domain of gp91(phox)
88c3lrxC_
not modelled 99.4 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative hydrogenase;
PDBTitle: crystal structure of the c-terminal domain (residues 78-226)2 of pf1911 hydrogenase from pyrococcus furiosus, northeast3 structural genomics consortium target pfr246a
89d1ycga1
not modelled 99.4 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
90c2q9uB_
not modelled 99.3 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
91c1ychD_
not modelled 99.3 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
92c3fniA_
not modelled 99.2 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
93d2arka1
not modelled 99.2 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
94c1e5dA_
not modelled 99.1 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
95d2a5la1
not modelled 98.9 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
96c3d7nA_
not modelled 98.7 18 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
97d1ydga_
not modelled 98.7 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
98c2zkiH_
not modelled 98.6 12 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
99c3b6iB_
not modelled 98.6 19 PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
100c3klbA_
not modelled 98.5 15 PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
101d1fdra1
not modelled 98.2 24 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
102d1ep3b1
not modelled 98.2 26 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
103d2cnda1
not modelled 98.1 19 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
104d1a8pa1
not modelled 98.1 21 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
105d2piaa1
not modelled 98.1 27 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
106c3edoA_
not modelled 98.0 16 PDB header:flavoprotein
Chain: A: PDB Molecule:putative trp repressor binding protein;
PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
107d1krha1
not modelled 98.0 25 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
108d1tvca1
not modelled 97.9 20 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
109d1cqxa2
not modelled 97.9 27 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
110c2q62A_
not modelled 97.9 17 PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti
111d1qfja1
not modelled 97.9 31 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
112d1qx4a1
not modelled 97.8 20 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
113d1gvha2
not modelled 97.7 24 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
114d1umka1
not modelled 97.7 19 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
115c3f2vA_
not modelled 97.7 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
116d2qwxa1
not modelled 97.6 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
117d1t5ba_
not modelled 97.6 8 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
118d1rtta_
not modelled 97.6 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
119c3k1yE_
not modelled 97.5 14 PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d
120d1t0ia_
not modelled 97.5 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0