Email l.a.kelley@imperial.ac.uk Description P38521 Date Thu Jan 5 11:58:12 GMT 2012 Unique Job ID d66d09fb8c81485a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qd7X_ 51.9 14 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 2 c2kvoA_ 34.1 18 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein; PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171 3 d1o0sa2 24.6 16 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 4 c3h11A_ 22.8 21 PDB header:apoptosis Chain: A: PDB Molecule:casp8 and fadd-like apoptosis regulator; PDBTitle: zymogen caspase-8:c-flipl protease domain complex 5 d1nd9a_ 22.0 18 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:N-terminal subdomain of bacterial translation initiation factor IF2 6 d1kkha2 21.7 22 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 7 d1pj3a2 20.6 24 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 8 c3g6iA_ 18.1 33 PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution 9 d1gq2a2 17.8 24 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 10 d1m72a_ 17.6 30 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 11 c2kjwA_ 17.5 10 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 12 c2nn3D_ 17.5 21 PDB header:hydrolase Chain: D: PDB Molecule:caspase-1; PDBTitle: structure of pro-sf-caspase-1 13 d1yg2a_ 17.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 14 d1v33a_ 17.1 10 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 15 c1kmcB_ 16.8 18 PDB header:apoptosis/hydrolase Chain: B: PDB Molecule:caspase-7; PDBTitle: crystal structure of the caspase-7 / xiap-bir2 complex 16 c2wzpR_ 16.4 20 PDB header:viral protein Chain: R: PDB Molecule:lactococcal phage p2 orf16; PDBTitle: structures of lactococcal phage p2 baseplate shed light on2 a novel mechanism of host attachment and activation in3 siphoviridae 17 c1o0sB_ 16.2 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: crystal structure of ascaris suum malic enzyme complexed with nadh 18 d2fsqa1 15.8 8 Fold:LigT-like Superfamily:LigT-like Family:Atu0111-like 19 c2zqeA_ 15.3 10 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 20 d1t1ea2 15.0 25 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 21 c2fp3A_ not modelled 13.3 26 PDB header:hydrolysis/apoptosis Chain: A: PDB Molecule:caspase nc; PDBTitle: crystal structure of the drosophila initiator caspase dronc 22 d1e1oa2 not modelled 13.0 10 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 23 d1k47a2 not modelled 12.6 11 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 24 d1iyjb3 not modelled 10.8 57 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 25 d1j9ia_ not modelled 10.8 26 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 26 c2wdpA_ not modelled 10.8 16 PDB header:hydrolase Chain: A: PDB Molecule:caspase-6; PDBTitle: crystal structure of ligand free human caspase-6 27 d1g71a_ not modelled 10.8 11 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 28 d1miua3 not modelled 10.6 57 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 29 c2aw5A_ not modelled 10.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp-dependent malic enzyme; PDBTitle: crystal structure of a human malic enzyme 30 c1gz3B_ not modelled 10.5 24 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: molecular mechanism for the regulation of human mitochondrial2 nad(p)+-dependent malic enzyme by atp and fumarate 31 c1qr6A_ not modelled 10.2 24 PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme 2; PDBTitle: human mitochondrial nad(p)-dependent malic enzyme 32 d2cxaa1 not modelled 9.3 13 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:LFTR-like 33 c2cxaA_ not modelled 9.3 13 PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli 34 c2kl5A_ not modelled 9.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yutd; PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232 35 c2hqrA_ not modelled 9.2 20 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 36 c2ns6A_ not modelled 9.0 16 PDB header:hydrolase Chain: A: PDB Molecule:mobilization protein a; PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162 37 d1jmxa1 not modelled 9.0 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 38 c3e4cB_ not modelled 9.0 21 PDB header:hydrolase Chain: B: PDB Molecule:caspase-1; PDBTitle: procaspase-1 zymogen domain crystal strucutre 39 c3f5bA_ not modelled 8.8 10 PDB header:transferase Chain: A: PDB Molecule:aminoglycoside n(6')acetyltransferase; PDBTitle: the crystal structure of aminoglycoside n(6')acetyltransferase from2 legionella pneumophila subsp. pneumophila str. philadelphia 1. 40 c3ew8A_ not modelled 8.4 16 PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 8; PDBTitle: crystal structure analysis of human hdac8 d101l variant 41 c3mjhD_ not modelled 8.4 50 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 42 d1pbya1 not modelled 8.2 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 43 c3fo8D_ not modelled 8.2 20 PDB header:viral protein Chain: D: PDB Molecule:tail sheath protein gp18; PDBTitle: crystal structure of the bacteriophage t4 tail sheath2 protein, protease resistant fragment gp18pr 44 c3k1tA_ not modelled 8.0 27 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase gsha; PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution 45 c2hbzA_ not modelled 7.9 16 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-1; PDBTitle: crystal structure of human caspase-1 (arg286->ala, glu390->ala) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk) 46 c2p7vA_ not modelled 7.7 8 PDB header:transcription Chain: A: PDB Molecule:regulator of sigma d; PDBTitle: crystal structure of the escherichia coli regulator of sigma 70, rsd,2 in complex with sigma 70 domain 4 47 d1zt2a1 not modelled 7.6 14 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 48 d2juza1 not modelled 7.4 40 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 49 d1nw9b_ not modelled 7.2 11 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 50 c3iukB_ not modelled 7.1 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 51 d1c3pa_ not modelled 6.8 18 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 52 c2zxyA_ not modelled 6.7 0 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 53 c3kxeD_ not modelled 6.6 20 PDB header:protein binding Chain: D: PDB Molecule:antitoxin protein pard-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex 54 d1c75a_ not modelled 6.6 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 55 d1dxxa2 not modelled 6.5 22 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 56 d1t64a_ not modelled 6.5 16 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 57 c1nmqB_ not modelled 6.4 18 PDB header:apoptosis, hydrolase Chain: B: PDB Molecule:caspase-3; PDBTitle: extendend tethering: in situ assembly of inhibitors 58 c1cp3B_ not modelled 6.4 18 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:apopain; PDBTitle: crystal structure of the complex of apopain with the tetrapeptide2 inhibitor ace-dvad-fmc 59 c2bpbB_ not modelled 6.2 13 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 60 d2jrxa1 not modelled 6.1 35 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 61 c1w2lA_ not modelled 6.0 11 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 62 d2i7pa2 not modelled 6.0 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 63 c2d89A_ not modelled 5.8 15 PDB header:structural protein, protein binding Chain: A: PDB Molecule:ehbp1 protein; PDBTitle: solution structure of the ch domain from human eh domain2 binding protein 1 64 c3a9fA_ not modelled 5.7 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the c-terminal domain of cytochrome cz2 from chlorobium tepidum 65 c3m3hA_ not modelled 5.7 11 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.75 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase from bacillus anthracis str. 'ames3 ancestor' 66 c1t1eA_ not modelled 5.6 25 PDB header:hydrolase Chain: A: PDB Molecule:kumamolisin; PDBTitle: high resolution crystal structure of the intact pro-2 kumamolisin, a sedolisin type proteinase (previously3 called kumamolysin or kscp) 67 c1kjkA_ not modelled 5.5 43 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: solution structure of the lambda integrase amino-terminal2 domain 68 d1z1ba1 not modelled 5.5 43 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:lambda integrase N-terminal domain 69 d1cora_ not modelled 5.5 31 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 70 d2qtia1 not modelled 5.5 25 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 71 c3bboQ_ not modelled 5.4 45 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein l18; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 72 d1a56a_ not modelled 5.4 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 73 c3bqsB_ not modelled 5.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form 74 d1aoaa2 not modelled 5.4 13 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 75 c2pebB_ not modelled 5.3 11 PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution 76 d3c7bb2 not modelled 5.2 36 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 77 d1otfa_ not modelled 5.2 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 78 c1pyoA_ not modelled 5.2 13 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-2; PDBTitle: crystal structure of human caspase-2 in complex with acetyl-leu-asp-2 glu-ser-asp-cho 79 c1gd2G_ not modelled 5.1 29 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 80 c2hwvA_ not modelled 5.1 71 PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.