Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	K	P	H	V	T	V	A	C	V	V	H	A	E	G	K	F	L	V	V	E	E	T	I	N	G	K	A	L	W	N	Q	P	A	G	H	L	E	A	D	E	T	L	V	E	A	A	A	R	E	L	W	E	E	T	G	I	S	A
Secondary structure
SS confidence
Disorder		?	?	?	?																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	P	Q	H	F	I	R	M	H	Q	W	I	A	P	D	K	T	P	F	L	R	F	L	F	A	I	E	L	E	Q	I	C	P	T	Q	P	H	D	S	D	I	D	C	C	R	W	V	S	A	E	E	I	L	Q	A	S	N	L	R	S
Secondary structure
SS confidence
Disorder																																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Sequence		P	L	V	A	E	S	I	R	C	Y	Q	S	G	Q	R	Y	P	L	E	M	I	G	D	F	N	W	P	F	T	K	G	V	I
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3dku chain B Region: 1 - 147 Aligned: 147 Modelled: 147 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 2b0v chain A domain 1 Region: 3 - 145 Aligned: 143 Modelled: 143 Confidence: 100.0% Identity: 36% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3cng chain C Region: 4 - 136 Aligned: 127 Modelled: 133 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 2gb5 chain B Region: 1 - 133 Aligned: 128 Modelled: 126 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 2qjo chain B Region: 2 - 133 Aligned: 132 Modelled: 132 Confidence: 99.9% Identity: 23% PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. Phyre2 PDB 3q4i chain A Region: 4 - 135 Aligned: 128 Modelled: 132 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ Phyre2 PDB 1vk6 chain A domain 2 Region: 3 - 132 Aligned: 125 Modelled: 130 Confidence: 99.9% Identity: 18% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 2pq1 chain B Region: 3 - 132 Aligned: 125 Modelled: 130 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 2fb1 chain A domain 2 Region: 3 - 133 Aligned: 131 Modelled: 129 Confidence: 99.9% Identity: 18% Fold: Nudix Superfamily: Nudix Family: BT0354 N-terminal domain-like Phyre2 PDB 3gz8 chain C Region: 3 - 132 Aligned: 128 Modelled: 130 Confidence: 99.9% Identity: 20% PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose Phyre2 PDB 3o8s chain A Region: 4 - 137 Aligned: 128 Modelled: 134 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution Phyre2 PDB 3h95 chain A Region: 5 - 141 Aligned: 129 Modelled: 137 Confidence: 99.9% Identity: 22% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 3fk9 chain B Region: 5 - 136 Aligned: 128 Modelled: 132 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans Phyre2 PDB 2r5w chain A Region: 3 - 114 Aligned: 112 Modelled: 112 Confidence: 99.9% Identity: 29% PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis Phyre2 PDB 2fb1 chain A Region: 3 - 149 Aligned: 147 Modelled: 147 Confidence: 99.9% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron Phyre2 PDB 1rya chain A Region: 2 - 119 Aligned: 118 Modelled: 118 Confidence: 99.9% Identity: 24% Fold: Nudix Superfamily: Nudix Family: GDP-mannose mannosyl hydrolase NudD Phyre2 PDB 1sjy chain A Region: 3 - 137 Aligned: 135 Modelled: 135 Confidence: 99.9% Identity: 27% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3gg6 chain A Region: 4 - 140 Aligned: 135 Modelled: 137 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 Phyre2 PDB 2fkb chain A domain 1 Region: 4 - 132 Aligned: 126 Modelled: 127 Confidence: 99.8% Identity: 23% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 1vhz chain A Region: 1 - 135 Aligned: 134 Modelled: 135 Confidence: 99.8% Identity: 17% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 1 c3dkuB_ 2 d2b0va1 3 c3cngC_ 4 c2gb5B_ 5 c2qjoB_ 6 c3q4iA_ 7 d1vk6a2 8 c2pq1B_ 9 d2fb1a2 10 c3gz8C_ 11 c3o8sA_ 12 c3h95A_ 13 c3fk9B_ 14 c2r5wA_ 15 c2fb1A_ 16 d1ryaa_ 17 d1sjya_ 18 c3gg6A_ 19 d2fkba1 20 d1vhza_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dkuB_ 100.0 100 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 2 d2b0va1 100.0 36 Fold:Nudix Superfamily:Nudix Family:MutT-like 3 c3cngC_ 99.9 24 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 4 c2gb5B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 5 c2qjoB_ 99.9 23 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 6 c3q4iA_ 99.9 23 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 7 d1vk6a2 99.9 18 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 8 c2pq1B_ 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 9 d2fb1a2 99.9 18 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 10 c3gz8C_ 99.9 20 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 11 c3o8sA_ 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 12 c3h95A_ 99.9 22 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 13 c3fk9B_ 99.9 21 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 14 c2r5wA_ 99.9 29 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 15 c2fb1A_ 99.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 16 d1ryaa_ 99.9 24 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 17 d1sjya_ 99.9 27 Fold:Nudix Superfamily:Nudix Family:MutT-like 18 c3gg6A_ 99.9 22 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 19 d2fkba1 99.8 23 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 20 d1vhza_ 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 21 d1vcda1 not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 22 d1irya_ not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 23 c2pqvA_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 24 c3f6aA_ not modelled 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 25 c3grnB_ not modelled 99.8 24 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 26 d2b06a1 not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 27 c3rh7A_ not modelled 99.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 28 c3r03B_ not modelled 99.8 22 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 29 c2o1cB_ not modelled 99.8 18 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 30 d2azwa1 not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 31 c3gwyA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 32 c3n77B_ not modelled 99.8 15 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 33 c3hhjA_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 34 c3ef5A_ not modelled 99.8 24 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 35 d1k2ea_ not modelled 99.8 26 Fold:Nudix Superfamily:Nudix Family:MutT-like 36 c2yyhC_ not modelled 99.8 23 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 37 d2fmla2 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 38 c3exqA_ not modelled 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 39 c3gz6A_ not modelled 99.8 20 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 40 d1puna_ not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 41 c2kdvA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 42 c3fjyB_ not modelled 99.8 22 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 43 d2fvva1 not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 44 c2fvvA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 45 c2qkmF_ not modelled 99.8 14 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 46 c2jvbA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 47 c3id9B_ not modelled 99.8 23 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 48 d1nqza_ not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 49 d1ktga_ not modelled 99.8 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 50 d1xsba_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 51 c2yvoA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 52 c3fcmA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 53 c2fmlB_ not modelled 99.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 54 c3i9xA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 55 c2w4eA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 56 c3sonB_ not modelled 99.8 23 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 57 d1ppva_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 58 d1v8ya_ not modelled 99.8 32 Fold:Nudix Superfamily:Nudix Family:MutT-like 59 d2a6ta2 not modelled 99.8 14 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 60 d1hzta_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 61 d1g0sa_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 62 d1jkna_ not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 63 c3e57A_ not modelled 99.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 64 c3bm4B_ not modelled 99.7 20 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 65 d2o5fa1 not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 66 c3f13A_ not modelled 99.7 18 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 67 d1mqea_ not modelled 99.7 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 68 c3edsA_ not modelled 99.7 25 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 69 c3q91D_ not modelled 99.7 17 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 70 d1viua_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 71 d1q33a_ not modelled 99.6 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 72 c1rrqA_ not modelled 99.6 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 73 d1x51a1 not modelled 99.6 21 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 74 d1rrqa2 not modelled 99.6 18 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 75 c2i6kA_ not modelled 99.5 18 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 76 c2pnyA_ not modelled 99.5 16 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 77 d1u20a1 not modelled 99.4 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 78 c3qsjA_ not modelled 99.4 24 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 79 c3dupB_ not modelled 99.3 16 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 80 c2j8qB_ not modelled 99.3 18 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 81 c3couA_ not modelled 98.4 18 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 97.7 16 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 96.8 23 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 d1aopa2 not modelled 9.7 6 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 85 c1wrjA_ not modelled 9.7 12 PDB header:transferase Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii 86 d2hqya2 not modelled 9.5 29 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 87 d2dexx3 not modelled 9.4 19 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain 88 c1kveB_ not modelled 9.4 26 PDB header:toxin Chain: B: PDB Molecule:smk toxin; PDBTitle: killer toxin from halotolerant yeast 89 c2ii8F_ not modelled 9.3 25 PDB header:signaling protein Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein; PDBTitle: anabaena sensory rhodopsin transducer 90 c2hdnE_ not modelled 8.9 27 PDB header:translation Chain: E: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution 91 d1nc7a_ not modelled 8.7 28 Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070 92 c3enoB_ not modelled 7.5 20 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 93 c2hf6A_ not modelled 6.6 13 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit zeta-1; PDBTitle: solution structure of human zeta-cop 94 d1ulqa2 not modelled 6.4 24 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 95 d1zl8a1 not modelled 6.4 50 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 96 c1zwvA_ not modelled 6.4 31 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 97 c2vldA_ not modelled 6.3 8 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 98 d1jiha2 not modelled 6.2 5 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 99 d1z3aa1 not modelled 6.2 13 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0