Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	V	T	D	F	S	F	E	L	P	E	S	L	I	A	H	Y	P	M	P	E	R	S	S	C	R	L	L	S	L	D	G	P	T	G	A	L	T	H	G	T	F	T	D	L	L	D	K	L	N	P	G	D	L	L	V	F	N	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?										?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	R	V	I	P	A	R	L	F	G	R	K	A	S	G	G	K	I	E	V	L	V	E	R	M	L	D	D	K	R	I	L	A	H	I	R	A	S	K	A	P	K	P	G	A	E	L	L	L	G	D	D	E	S	I	N	A	T	M	T
Secondary structure
SS confidence
Disorder																																								?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	R	H	G	A	L	F	E	V	E	F	N	D	E	R	S	V	L	D	I	L	N	S	I	G	H	M	P	L	P	P	Y	I	D	R	P	D	E	D	A	D	R	E	L	Y	Q	T	V	Y	S	E	K	P	G	A	V	A	A	P	T
Secondary structure
SS confidence
Disorder																																						?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	G	L	H	F	D	E	P	L	L	E	K	L	R	A	K	G	V	E	M	A	F	V	T	L	H	V	G	A	G	T	F	Q	P	V	R	V	D	T	I	E	D	H	I	M	H	S	E	Y	A	E	V	P	Q	D	V	V	D	A	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	A	A	K	A	R	G	N	R	V	I	A	V	G	T	T	S	V	R	S	L	E	S	A	A	Q	A	A	K	N	D	L	I	E	P	F	F	D	D	T	Q	I	F	I	Y	P	G	F	Q	Y	K	V	V	D	A	L	V	T	N	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Sequence		H	L	P	E	S	T	L	I	M	L	V	S	A	F	A	G	Y	Q	H	T	M	N	A	Y	K	A	A	V	E	E	K	Y	R	F	F	S	Y	G	D	A	M	F	I	T	Y	N	P	Q	A	I	N	E	R	V	G	E
Secondary structure
SS confidence
Disorder																																																	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yy3 chain A Region: 4 - 343 Aligned: 314 Modelled: 326 Confidence: 100.0% Identity: 45% PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) Phyre2 PDB 1wdi chain A Region: 2 - 344 Aligned: 292 Modelled: 315 Confidence: 100.0% Identity: 48% Fold: QueA-like Superfamily: QueA-like Family: QueA-like Phyre2 PDB 1vky chain A Region: 4 - 344 Aligned: 280 Modelled: 294 Confidence: 100.0% Identity: 46% Fold: QueA-like Superfamily: QueA-like Family: QueA-like Phyre2 PDB 1jr7 chain A Region: 50 - 84 Aligned: 35 Modelled: 35 Confidence: 88.5% Identity: 20% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Gab protein (hypothetical protein YgaT) Phyre2 PDB 3ms5 chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 86.1% Identity: 44% PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) Phyre2 PDB 1ds1 chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 84.7% Identity: 56% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Clavaminate synthase Phyre2 PDB 2og5 chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 83.4% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) Phyre2 PDB 2wbq chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 81.9% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine Phyre2 PDB 1oih chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 81.2% Identity: 17% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TauD/TfdA-like Phyre2 PDB 1otj chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 79.3% Identity: 17% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TauD/TfdA-like Phyre2 PDB 3r1j chain B Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 77.2% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form Phyre2 PDB 3pvj chain B Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 76.1% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 Phyre2 PDB 3eat chain X Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 74.8% Identity: 22% PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa Phyre2 PDB 1y0z chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 69.3% Identity: 33% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: gamma-Butyrobetaine hydroxylase Phyre2 PDB 1qyi chain A Region: 187 - 255 Aligned: 69 Modelled: 69 Confidence: 63.7% Identity: 26% Fold: HAD-like Superfamily: HAD-like Family: Hypothetical protein MW1667 (SA1546) Phyre2 PDB 1nx4 chain A Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 61.9% Identity: 50% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: gamma-Butyrobetaine hydroxylase Phyre2 PDB 3p9z chain A Region: 182 - 263 Aligned: 82 Modelled: 82 Confidence: 47.6% Identity: 13% PDB header:ligase Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd); PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695 Phyre2 PDB 2nux chain B Region: 187 - 291 Aligned: 81 Modelled: 105 Confidence: 47.4% Identity: 16% PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution Phyre2 PDB 1hg3 chain A Region: 226 - 256 Aligned: 31 Modelled: 31 Confidence: 44.7% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 2hc9 chain A Region: 97 - 203 Aligned: 102 Modelled: 107 Confidence: 44.5% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase 1; PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1) Phyre2 1 c1yy3A_ 2 d1wdia_ 3 d1vkya_ 4 d1jr7a_ 5 c3ms5A_ 6 d1ds1a_ 7 c2og5A_ 8 c2wbqA_ 9 d1oiha_ 10 d1otja_ 11 c3r1jB_ 12 c3pvjB_ 13 c3eatX_ 14 d1y0za_ 15 d1qyia_ 16 d1nx4a_ 17 c3p9zA_ 18 c2nuxB_ 19 d1hg3a_ 20 c2hc9A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1yy3A_ 100.0 45 PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) 2 d1wdia_ 100.0 48 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 3 d1vkya_ 100.0 46 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 4 d1jr7a_ 88.5 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 5 c3ms5A_ 86.1 44 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) 6 d1ds1a_ 84.7 56 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 7 c2og5A_ 83.4 33 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 8 c2wbqA_ 81.9 33 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 9 d1oiha_ 81.2 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 10 d1otja_ 79.3 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 11 c3r1jB_ 77.2 22 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 12 c3pvjB_ 76.1 11 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 13 c3eatX_ 74.8 22 PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa 14 d1y0za_ 69.3 33 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 15 d1qyia_ 63.7 26 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein MW1667 (SA1546) 16 d1nx4a_ 61.9 50 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 17 c3p9zA_ 47.6 13 PDB header:ligase Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd); PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695 18 c2nuxB_ 47.4 16 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 19 d1hg3a_ 44.7 23 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 20 c2hc9A_ 44.5 18 PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase 1; PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1) 21 d1a3xa1 not modelled 44.5 11 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 22 c3ny0D_ not modelled 43.2 14 PDB header:metal binding protein Chain: D: PDB Molecule:urease accessory protein uree; PDBTitle: crystal structure of uree from helicobacter pylori (ni2+ bound form) 23 c3pihA_ not modelled 42.8 32 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 24 d1ttja_ not modelled 40.1 45 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 25 c2h6rG_ not modelled 40.0 19 PDB header:isomerase Chain: G: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase (tim) from2 methanocaldococcus jannaschii 26 d1jr2a_ not modelled 38.6 20 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 27 c1jr2A_ not modelled 38.6 20 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 28 d1n55a_ not modelled 37.4 35 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 29 c2vf7B_ not modelled 37.2 39 PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans 30 d1mo0a_ not modelled 37.0 26 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 31 d1pkla1 not modelled 35.5 15 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 32 d1w0ma_ not modelled 35.5 28 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 33 d2ebfx2 not modelled 34.9 10 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:PMT domain-like 34 d1wjja_ not modelled 34.6 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 35 d2evra2 not modelled 34.5 28 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 36 d1sw3a_ not modelled 33.4 29 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 37 c2dp3A_ not modelled 32.9 29 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia 38 c1pklB_ not modelled 32.0 15 PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase 39 d1wd7a_ not modelled 31.0 18 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 40 d2b8ea1 not modelled 30.1 17 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 41 c3fkkA_ not modelled 29.4 10 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 42 c1yyaA_ not modelled 29.4 26 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8 43 d1omha_ not modelled 28.7 31 Fold:Origin of replication-binding domain, RBD-like Superfamily:Origin of replication-binding domain, RBD-like Family:Relaxase domain 44 d1neya_ not modelled 28.6 29 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 45 c3kxqB_ not modelled 28.4 45 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from bartonella2 henselae at 1.6a resolution 46 c3i5aA_ not modelled 28.2 20 PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae 47 c3hvbB_ not modelled 28.2 13 PDB header:hydrolase Chain: B: PDB Molecule:protein fimx; PDBTitle: crystal structure of the dual-domain ggdef-eal module of2 fimx from pseudomonas aeruginosa 48 c3l6tB_ not modelled 28.2 24 PDB header:hydrolase Chain: B: PDB Molecule:mobilization protein trai; PDBTitle: crystal structure of an n-terminal mutant of the plasmid pcu1 trai2 relaxase domain 49 d1b9ba_ not modelled 28.1 32 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 50 c3d8tB_ not modelled 28.0 16 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase 51 d1diha1 not modelled 27.1 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 52 c2x7jA_ not modelled 26.9 21 PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis 53 d1r2ra_ not modelled 26.7 26 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 54 d1suxa_ not modelled 26.6 42 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 55 d1o7ia_ not modelled 26.2 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 56 d1kv5a_ not modelled 25.8 45 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 57 c1nl3B_ not modelled 25.8 31 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 58 d1xnea_ not modelled 24.4 33 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 59 d1w3ia_ not modelled 23.7 28 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 60 c1ayeA_ not modelled 23.4 16 PDB header:serine protease Chain: A: PDB Molecule:procarboxypeptidase a2; PDBTitle: human procarboxypeptidase a2 61 c3m9yB_ not modelled 22.5 35 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution 62 c3civA_ not modelled 22.3 8 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius 63 c2gm2A_ not modelled 21.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 64 c3ijpA_ not modelled 21.7 31 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution 65 c2jgqB_ not modelled 21.6 26 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori 66 c3shoA_ not modelled 20.7 29 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 67 c3dinB_ not modelled 20.5 25 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 68 d1jmca1 not modelled 20.5 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 69 d1m6ja_ not modelled 20.5 32 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 70 c2boaB_ not modelled 20.5 15 PDB header:hydrolase Chain: B: PDB Molecule:carboxypeptidase a4; PDBTitle: human procarboxypeptidase a4. 71 d2g50a1 not modelled 20.4 8 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 72 c2k50A_ not modelled 20.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:replication factor a related protein; PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a. 73 d1ntga_ not modelled 19.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Myf domain 74 c3bi8A_ not modelled 19.9 22 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum 75 d1o5xa_ not modelled 19.8 23 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 76 c1drwA_ not modelled 19.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: escherichia coli dhpr/nhdh complex 77 d1hl2a_ not modelled 19.2 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 78 c2eo2A_ not modelled 18.4 22 PDB header:oxidoreductase Chain: A: PDB Molecule:adult male hypothalamus cdna, riken full-length PDBTitle: solution structure of the insertion region (510-573) of2 fthfs domain from mouse methylenetetrahydrofolate3 dehydrogenase (nadp+ dependent) 1-like protein 79 c3s6dA_ not modelled 18.3 32 PDB header:isomerase Chain: A: PDB Molecule:putative triosephosphate isomerase; PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis 80 c3lerA_ not modelled 18.0 18 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 81 c1ynxA_ not modelled 18.0 18 PDB header:dna binding protein Chain: A: PDB Molecule:replication factor-a protein 1; PDBTitle: solution structure of dna binding domain a (dbd-a) of2 s.cerevisiae replication protein a (rpa) 82 c3krsB_ not modelled 17.9 32 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution 83 c3gvgA_ not modelled 17.6 26 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from mycobacterium2 tuberculosis 84 c2zpmA_ not modelled 16.9 29 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 85 d1o1xa_ not modelled 16.8 25 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 86 c3th6B_ not modelled 16.8 26 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus. 87 c2ygrD_ not modelled 16.7 36 PDB header:hydrolase Chain: D: PDB Molecule:uvrabc system protein a; PDBTitle: mycobacterium tuberculosis uvra 88 c3pl0B_ not modelled 16.2 25 PDB header:biosynthetic protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution 89 d1trea_ not modelled 16.2 29 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 90 c3ahxC_ not modelled 16.1 24 PDB header:hydrolase Chain: C: PDB Molecule:beta-glucosidase a; PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans 91 d1p4da_ not modelled 16.0 28 Fold:Origin of replication-binding domain, RBD-like Superfamily:Origin of replication-binding domain, RBD-like Family:Relaxase domain 92 d1aw1a_ not modelled 15.8 32 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 93 d1wcga1 not modelled 15.8 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 94 d1owfa_ not modelled 15.6 22 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 95 c3hv9A_ not modelled 15.4 13 PDB header:hydrolase Chain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx eal domain from pseudomonas aeruginosa 96 c3e96B_ not modelled 15.4 12 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii 97 d1s04a_ not modelled 15.4 27 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 98 c2iyeC_ not modelled 15.3 23 PDB header:hydrolase Chain: C: PDB Molecule:copper-transporting atpase; PDBTitle: structure of catalytic cpx-atpase domain copb-b 99 d1o5ka_ not modelled 14.8 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0