Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	K	E	R	I	I	Q	E	F	V	P	G	K	Q	V	T	L	A	H	L	I	A	H	P	G	E	E	L	A	K	K	I	G	V	P	D	A	G	A	I	G	I	M	T	L	T	P	G	E	T	A	M	I	A	G	D	L	A	L
Secondary structure
SS confidence
Disorder		?	?				?	?		?																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Sequence		K	A	A	D	V	H	I	G	F	L	D	R	F	S	G	A	L	V	I	Y	G	S	V	G	A	V	E	E	A	L	S	Q	T	V	S	G	L	G	R	L	L	N	Y	T	L	C	E	M	T	K	S
Secondary structure
SS confidence
Disorder																																														?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ia0 chain C Region: 3 - 111 Aligned: 109 Modelled: 109 Confidence: 100.0% Identity: 99% PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant Phyre2 PDB 3cgi chain D Region: 2 - 111 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 56% PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment Phyre2 PDB 3i82 chain A Region: 18 - 101 Aligned: 83 Modelled: 84 Confidence: 99.8% Identity: 25% PDB header:structural protein Chain: A: PDB Molecule:ethanolamine utilization protein eutl; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutl closed2 form Phyre2 PDB 3nwg chain A Region: 13 - 100 Aligned: 88 Modelled: 88 Confidence: 99.4% Identity: 20% PDB header:structural protein Chain: A: PDB Molecule:microcompartments protein; PDBTitle: the crystal structure of a microcomparments protein from2 desulfitobacterium hafniense dcb Phyre2 PDB 3io0 chain A Region: 20 - 102 Aligned: 83 Modelled: 83 Confidence: 99.4% Identity: 31% PDB header:structural protein Chain: A: PDB Molecule:etub protein; PDBTitle: crystal structure of etub from clostridium kluyveri Phyre2 PDB 3n79 chain A Region: 13 - 99 Aligned: 87 Modelled: 87 Confidence: 99.3% Identity: 25% PDB header:electron transport Chain: A: PDB Molecule:pdut; PDBTitle: pdut c38s mutant from salmonella enterica typhimurium Phyre2 PDB 2ewh chain A domain 1 Region: 38 - 100 Aligned: 63 Modelled: 63 Confidence: 98.7% Identity: 27% Fold: Ferredoxin-like Superfamily: CcmK-like Family: CcmK-like Phyre2 PDB 2a10 chain A domain 1 Region: 38 - 102 Aligned: 65 Modelled: 65 Confidence: 98.6% Identity: 23% Fold: Ferredoxin-like Superfamily: CcmK-like Family: CcmK-like Phyre2 PDB 3ngk chain A Region: 39 - 100 Aligned: 62 Modelled: 62 Confidence: 98.6% Identity: 24% PDB header:unknown function Chain: A: PDB Molecule:propanediol utilization protein pdua; PDBTitle: pdua from salmonella enterica typhimurium Phyre2 PDB 2a1b chain A domain 1 Region: 40 - 102 Aligned: 63 Modelled: 63 Confidence: 98.6% Identity: 22% Fold: Ferredoxin-like Superfamily: CcmK-like Family: CcmK-like Phyre2 PDB 3i6p chain F Region: 39 - 100 Aligned: 62 Modelled: 62 Confidence: 98.1% Identity: 24% PDB header:structural protein Chain: F: PDB Molecule:ethanolamine utilization protein eutm; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm Phyre2 PDB 3f56 chain F Region: 38 - 110 Aligned: 69 Modelled: 73 Confidence: 93.7% Identity: 23% PDB header:structural protein Chain: F: PDB Molecule:csos1d; PDBTitle: the structure of a previously undetected carboxysome shell2 protein: csos1d from prochlorococcus marinus med4 Phyre2 PDB 2r48 chain A domain 1 Region: 27 - 95 Aligned: 66 Modelled: 69 Confidence: 80.5% Identity: 29% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 2r4q chain A domain 1 Region: 27 - 95 Aligned: 66 Modelled: 68 Confidence: 79.6% Identity: 32% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 2kyr chain A Region: 27 - 101 Aligned: 73 Modelled: 75 Confidence: 77.6% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 Phyre2 PDB 1qna chain A domain 1 Region: 74 - 105 Aligned: 31 Modelled: 32 Confidence: 69.0% Identity: 23% Fold: TBP-like Superfamily: TATA-box binding protein-like Family: TATA-box binding protein (TBP), C-terminal domain Phyre2 PDB 1nh2 chain A domain 1 Region: 74 - 105 Aligned: 31 Modelled: 32 Confidence: 66.5% Identity: 19% Fold: TBP-like Superfamily: TATA-box binding protein-like Family: TATA-box binding protein (TBP), C-terminal domain Phyre2 PDB 1cdw chain A domain 1 Region: 74 - 105 Aligned: 31 Modelled: 32 Confidence: 61.7% Identity: 23% Fold: TBP-like Superfamily: TATA-box binding protein-like Family: TATA-box binding protein (TBP), C-terminal domain Phyre2 PDB 1qlm chain A Region: 22 - 109 Aligned: 84 Modelled: 84 Confidence: 52.0% Identity: 20% Fold: Methenyltetrahydromethanopterin cyclohydrolase Superfamily: Methenyltetrahydromethanopterin cyclohydrolase Family: Methenyltetrahydromethanopterin cyclohydrolase Phyre2 PDB 3eik chain B Region: 74 - 105 Aligned: 31 Modelled: 32 Confidence: 41.2% Identity: 26% PDB header:transcription Chain: B: PDB Molecule:tata-box-binding protein; PDBTitle: double stranded dna binding protein Phyre2 1 c3ia0c_ 2 c3cgiD_ 3 c3i82A_ 4 c3nwgA_ 5 c3io0A_ 6 c3n79A_ 7 d2ewha1 8 d2a10a1 9 c3ngkA_ 10 d2a1ba1 11 c3i6pF_ 12 c3f56F_ 13 d2r48a1 14 d2r4qa1 15 c2kyrA_ 16 d1qnaa1 17 d1nh2a1 18 d1cdwa1 19 d1qlma_ 20 c3eikB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ia0c_ 100.0 99 PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant 2 c3cgiD_ 100.0 56 PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment 3 c3i82A_ 99.8 25 PDB header:structural protein Chain: A: PDB Molecule:ethanolamine utilization protein eutl; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutl closed2 form 4 c3nwgA_ 99.4 20 PDB header:structural protein Chain: A: PDB Molecule:microcompartments protein; PDBTitle: the crystal structure of a microcomparments protein from2 desulfitobacterium hafniense dcb 5 c3io0A_ 99.4 31 PDB header:structural protein Chain: A: PDB Molecule:etub protein; PDBTitle: crystal structure of etub from clostridium kluyveri 6 c3n79A_ 99.3 25 PDB header:electron transport Chain: A: PDB Molecule:pdut; PDBTitle: pdut c38s mutant from salmonella enterica typhimurium 7 d2ewha1 98.7 27 Fold:Ferredoxin-like Superfamily:CcmK-like Family:CcmK-like 8 d2a10a1 98.6 23 Fold:Ferredoxin-like Superfamily:CcmK-like Family:CcmK-like 9 c3ngkA_ 98.6 24 PDB header:unknown function Chain: A: PDB Molecule:propanediol utilization protein pdua; PDBTitle: pdua from salmonella enterica typhimurium 10 d2a1ba1 98.6 22 Fold:Ferredoxin-like Superfamily:CcmK-like Family:CcmK-like 11 c3i6pF_ 98.1 24 PDB header:structural protein Chain: F: PDB Molecule:ethanolamine utilization protein eutm; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm 12 c3f56F_ 93.7 23 PDB header:structural protein Chain: F: PDB Molecule:csos1d; PDBTitle: the structure of a previously undetected carboxysome shell2 protein: csos1d from prochlorococcus marinus med4 13 d2r48a1 80.5 29 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 14 d2r4qa1 79.6 32 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 15 c2kyrA_ 77.6 21 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 16 d1qnaa1 69.0 23 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 17 d1nh2a1 66.5 19 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 18 d1cdwa1 61.7 23 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 19 d1qlma_ 52.0 20 Fold:Methenyltetrahydromethanopterin cyclohydrolase Superfamily:Methenyltetrahydromethanopterin cyclohydrolase Family:Methenyltetrahydromethanopterin cyclohydrolase 20 c3eikB_ 41.2 26 PDB header:transcription Chain: B: PDB Molecule:tata-box-binding protein; PDBTitle: double stranded dna binding protein 21 d1t1ea2 not modelled 38.2 18 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 22 c1ngmM_ not modelled 36.2 19 PDB header:transcription/dna Chain: M: PDB Molecule:transcription initiation factor tfiid; PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex 23 c1rm1A_ not modelled 36.2 19 PDB header:transcription/dna Chain: A: PDB Molecule:tata-box binding protein; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex 24 d1nh2a2 not modelled 35.3 23 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 25 c2z8uQ_ not modelled 32.6 30 PDB header:transcription Chain: Q: PDB Molecule:tata-box-binding protein; PDBTitle: methanococcus jannaschii tbp 26 d1x4ma1 not modelled 28.8 21 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 27 d1mp9a2 not modelled 28.3 33 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 28 c1njjC_ not modelled 26.0 10 PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 29 c2hh3A_ not modelled 24.5 25 PDB header:rna binding protein Chain: A: PDB Molecule:kh-type splicing regulatory protein; PDBTitle: solution structure of the third kh domain of ksrp 30 d1aisa2 not modelled 23.8 31 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 31 d1cdwa2 not modelled 23.2 27 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 32 c2hh2A_ not modelled 23.0 19 PDB header:rna binding protein Chain: A: PDB Molecule:kh-type splicing regulatory protein; PDBTitle: solution structure of the fourth kh domain of ksrp 33 d1qnaa2 not modelled 21.6 27 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 34 d1we8a_ not modelled 21.3 21 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 35 d1mp9a1 not modelled 19.9 27 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 36 c1t1eA_ not modelled 18.0 18 PDB header:hydrolase Chain: A: PDB Molecule:kumamolisin; PDBTitle: high resolution crystal structure of the intact pro-2 kumamolisin, a sedolisin type proteinase (previously3 called kumamolysin or kscp) 37 c1ztgD_ not modelled 17.5 16 PDB header:dna, rna binding protein/dna Chain: D: PDB Molecule:poly(rc)-binding protein 1; PDBTitle: human alpha polyc binding protein kh1 38 c2jzxA_ not modelled 16.8 17 PDB header:rna binding protein Chain: A: PDB Molecule:poly(rc)-binding protein 2; PDBTitle: pcbp2 kh1-kh2 domains 39 c1mp9B_ not modelled 16.8 31 PDB header:dna binding protein Chain: B: PDB Molecule:tata-binding protein; PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus2 acidocaldarius 40 d1j4wa1 not modelled 16.3 22 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 41 c3n89B_ not modelled 16.2 12 PDB header:cell cycle Chain: B: PDB Molecule:defective in germ line development protein 3, isoform a; PDBTitle: kh domains 42 d1dtja_ not modelled 15.8 17 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 43 d1khma_ not modelled 14.1 14 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 44 d1s99a_ not modelled 13.6 13 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:Putative thiamin/HMP-binding protein YkoF 45 c1mzjB_ not modelled 12.6 18 PDB header:transferase Chain: B: PDB Molecule:beta-ketoacylsynthase iii; PDBTitle: crystal structure of the priming beta-ketosynthase from the2 r1128 polyketide biosynthetic pathway 46 d2axya1 not modelled 12.4 13 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 47 c3ipfA_ not modelled 12.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. 48 d1ec6a_ not modelled 11.8 16 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 49 d1zzka1 not modelled 11.4 14 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 50 d1d7ka2 not modelled 11.4 16 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 51 d2ba0a3 not modelled 11.3 19 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 52 c3edyA_ not modelled 11.2 18 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidyl-peptidase 1; PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1 53 c1iruF_ not modelled 10.7 20 PDB header:hydrolase Chain: F: PDB Molecule:20s proteasome; PDBTitle: crystal structure of the mammalian 20s proteasome at 2.75 a2 resolution 54 d1iruf_ not modelled 10.7 20 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 55 d1irug_ not modelled 10.5 33 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 56 d2ctma1 not modelled 10.1 22 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 57 c3bdmF_ not modelled 9.7 27 PDB header:hydrolase Chain: F: PDB Molecule:proteasome component c1; PDBTitle: yeast 20s proteasome:glidobactin a-complex 58 d1rypg_ not modelled 9.7 27 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 59 c3h76A_ not modelled 9.7 18 PDB header:transferase Chain: A: PDB Molecule:pqs biosynthetic enzyme; PDBTitle: crystal structure of pqsd, a key enzyme in pseudomonas2 aeruginosa quinolone signal biosynthesis pathway 60 d1irua_ not modelled 9.4 31 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 61 c1d3uA_ not modelled 9.1 31 PDB header:gene regulation/dna Chain: A: PDB Molecule:tata-binding protein; PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei 62 d2ooia1 not modelled 8.7 6 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 63 d1rype_ not modelled 8.7 31 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 64 d1x4na1 not modelled 8.6 13 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 65 d2ctka1 not modelled 8.4 18 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 66 d1aisa1 not modelled 8.3 38 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 67 c2qnxA_ not modelled 8.0 16 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: crystal structure of the complex between the mycobacterium beta-2 ketoacyl-acyl carrier protein synthase iii (fabh) and 11-3 [(decyloxycarbonyl)dithio]-undecanoic acid 68 c3df7A_ not modelled 8.0 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative atp-grasp superfamily protein; PDBTitle: crystal structure of a putative atp-grasp superfamily2 protein from archaeoglobus fulgidus 69 d1rypf_ not modelled 7.7 33 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 70 d1rypb_ not modelled 7.7 27 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 71 c2e3uA_ not modelled 7.5 11 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein ph1566; PDBTitle: crystal structure analysis of dim2p from pyrococcus horikoshii ot3 72 d1irud_ not modelled 7.4 27 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 73 c2kp6A_ not modelled 6.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 74 d1iruc_ not modelled 6.8 31 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 75 d1rypa_ not modelled 6.6 38 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 76 d1irub_ not modelled 6.3 27 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 77 d1nvmb2 not modelled 6.0 39 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 78 c3lpeF_ not modelled 6.0 35 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 79 d1rypd_ not modelled 5.8 38 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 80 d1irue_ not modelled 5.8 23 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 81 d2ctla1 not modelled 5.8 33 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 82 c3krmB_ not modelled 5.7 13 PDB header:rna binding protein Chain: B: PDB Molecule:insulin-like growth factor 2 mrna-binding protein PDBTitle: imp1 kh34 83 c3orsD_ not modelled 5.7 11 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 84 d2ctfa1 not modelled 5.5 21 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 85 d1rypc_ not modelled 5.5 38 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 86 c2pn1A_ not modelled 5.5 21 PDB header:ligase Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit; PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution 87 d1wvna1 not modelled 5.4 23 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 88 c2dgrA_ not modelled 5.3 14 PDB header:rna binding protein Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1; PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1 89 c2anrA_ not modelled 5.3 9 PDB header:rna-binding protein/rna Chain: A: PDB Molecule:neuro-oncological ventral antigen 1; PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0