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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1d3uA_

Fold library idPDB HeaderMoleculeTitle
c1d3uA_PDB header: gene regulation/dnaChain: A: PDB Molecule: tata-binding protein;PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei


Added to library: Tue Mar 16 14:28:16 2010
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA
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Known secondary structure (DSSP)



TT

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TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYR
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Known secondary structure (DSSP) SSTTT


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 .........150.........160.........170.........180.
Sequence VKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY
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Known secondary structure (DSSP) TTTT
TTSSST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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