 |
| Job Description | P63746 | | Confidence | 9.13% | Date | Thu Jan 5 12:08:10 GMT 2012 |
| Rank | 61 | Aligned Residues | 26 |
| % Identity | 31% | Template | c1d3uA_ |
| PDB info |
PDB header:gene regulation/dna | Chain: A: PDB Molecule:tata-binding protein; |
PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
|
| Resolution | 2.40 Å |
|
|   |   |
74 | . | . | . | . | . | 80 | . | |
|
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|  |  |  |  |  |  | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | G | A | L | V | I | Y | G | . |
. |
S | V | G | A | V | E | E | A | L | S | Q | T | V | S | G | L | G | R |
| Query Conservation |   |
|
|
|
|
|
|
|
| . | . |   |
|
|   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|   |   |
| Template Sequence |   |
S | G | K | I | V | C | S | G | A | K | S | E | A | D | A | W | E | A | V | R | K | L | L | R | E | L | D | K |
| Template Known Secondary structure |   |
T | S |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|