Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	N	I	V	L	S	R	I	D	E	R	L	I	H	G	Q	V	G	V	Q	W	V	G	F	A	G	A	N	L	V	L	V	A	N	D	E	V	A	E	D	P	V	Q	Q	N	L	M	E	M	V	L	A	E	G	I	A	V	R	F
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	T	L	Q	K	V	I	D	N	I	H	R	A	A	D	R	Q	K	I	L	L	V	C	K	T	P	A	D	F	L	T	L	V	K	G	G	V	P	V	N	R	I	N	V	G	N	M	H	Y	A	N	G	K	Q	Q	I	A	K	T	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Sequence		S	V	D	A	G	D	I	A	A	F	N	D	L	K	T	A	G	V	E	C	F	V	Q	G	V	P	T	E	P	A	V	D	L	F	K	L	L
Secondary structure
SS confidence
Disorder																																?	?				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nrz chain A Region: 1 - 157 Aligned: 156 Modelled: 157 Confidence: 100.0% Identity: 35% Fold: PTS IIb component Superfamily: PTS IIb component Family: PTS IIb component Phyre2 PDB 1vsq chain C Region: 1 - 157 Aligned: 156 Modelled: 157 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system Phyre2 PDB 3lfj chain B Region: 1 - 157 Aligned: 157 Modelled: 157 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis Phyre2 PDB 1ble chain A Region: 1 - 157 Aligned: 156 Modelled: 157 Confidence: 100.0% Identity: 33% Fold: PTS IIb component Superfamily: PTS IIb component Family: PTS IIb component Phyre2 PDB 3p3v chain B Region: 2 - 157 Aligned: 155 Modelled: 156 Confidence: 100.0% Identity: 42% PDB header:transferase Chain: B: PDB Molecule:pts system, n-acetylgalactosamine-specific iib component; PDBTitle: crystal structure of a pts dependent n-acetyl-galactosamine-iib2 component (agav, spy_0631) from streptococcus pyogenes at 1.65 a3 resolution Phyre2 PDB 3eye chain A Region: 3 - 153 Aligned: 151 Modelled: 151 Confidence: 100.0% Identity: 46% PDB header:transferase Chain: A: PDB Molecule:pts system n-acetylgalactosamine-specific iib PDBTitle: crystal structure of pts system n-acetylgalactosamine-2 specific iib component 1 from escherichia coli Phyre2 PDB 1qap chain A Region: 62 - 142 Aligned: 64 Modelled: 66 Confidence: 65.0% Identity: 8% PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid Phyre2 PDB 3l0g chain D Region: 62 - 142 Aligned: 64 Modelled: 66 Confidence: 62.3% Identity: 16% PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution Phyre2 PDB 1r8j chain A domain 2 Region: 58 - 149 Aligned: 92 Modelled: 92 Confidence: 54.3% Identity: 17% Fold: Flavodoxin-like Superfamily: CheY-like Family: N-terminal domain of the circadian clock protein KaiA Phyre2 PDB 3rfa chain A Region: 32 - 148 Aligned: 113 Modelled: 117 Confidence: 52.2% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Phyre2 PDB 1k68 chain A Region: 29 - 72 Aligned: 44 Modelled: 44 Confidence: 48.1% Identity: 9% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3ilh chain A Region: 27 - 72 Aligned: 46 Modelled: 46 Confidence: 44.9% Identity: 11% PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii Phyre2 PDB 1qap chain A domain 1 Region: 62 - 142 Aligned: 64 Modelled: 66 Confidence: 44.5% Identity: 8% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 3pm7 chain A Region: 110 - 139 Aligned: 30 Modelled: 30 Confidence: 42.5% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184 Phyre2 PDB 2k1o chain A Region: 113 - 139 Aligned: 27 Modelled: 27 Confidence: 37.7% Identity: 19% PDB header:gene regulation Chain: A: PDB Molecule:putative; PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564). Phyre2 PDB 2yxx chain A Region: 46 - 149 Aligned: 85 Modelled: 87 Confidence: 35.7% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) Phyre2 PDB 3btn chain A Region: 46 - 150 Aligned: 85 Modelled: 88 Confidence: 35.1% Identity: 11% PDB header:biosynthetic protein Chain: A: PDB Molecule:antizyme inhibitor 1; PDBTitle: crystal structure of antizyme inhibitor, an ornithine2 decarboxylase homologous protein Phyre2 PDB 3obh chain A Region: 110 - 132 Aligned: 23 Modelled: 20 Confidence: 33.1% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104 Phyre2 PDB 3paj chain A Region: 62 - 142 Aligned: 64 Modelled: 66 Confidence: 33.0% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961 Phyre2 PDB 1qpo chain A domain 1 Region: 62 - 108 Aligned: 45 Modelled: 47 Confidence: 30.9% Identity: 9% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 1 d1nrza_ 2 c1vsqC_ 3 c3lfjB_ 4 d1blea_ 5 c3p3vB_ 6 c3eyeA_ 7 c1qapA_ 8 c3l0gD_ 9 d1r8ja2 10 c3rfaA_ 11 d1k68a_ 12 c3ilhA_ 13 d1qapa1 14 c3pm7A_ 15 c2k1oA_ 16 c2yxxA_ 17 c3btnA_ 18 c3obhA_ 19 c3pajA_ 20 d1qpoa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nrza_ 100.0 35 Fold:PTS IIb component Superfamily:PTS IIb component Family:PTS IIb component 2 c1vsqC_ 100.0 37 PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system 3 c3lfjB_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis 4 d1blea_ 100.0 33 Fold:PTS IIb component Superfamily:PTS IIb component Family:PTS IIb component 5 c3p3vB_ 100.0 42 PDB header:transferase Chain: B: PDB Molecule:pts system, n-acetylgalactosamine-specific iib component; PDBTitle: crystal structure of a pts dependent n-acetyl-galactosamine-iib2 component (agav, spy_0631) from streptococcus pyogenes at 1.65 a3 resolution 6 c3eyeA_ 100.0 46 PDB header:transferase Chain: A: PDB Molecule:pts system n-acetylgalactosamine-specific iib PDBTitle: crystal structure of pts system n-acetylgalactosamine-2 specific iib component 1 from escherichia coli 7 c1qapA_ 65.0 8 PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid 8 c3l0gD_ 62.3 16 PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution 9 d1r8ja2 54.3 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:N-terminal domain of the circadian clock protein KaiA 10 c3rfaA_ 52.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine 11 d1k68a_ 48.1 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 12 c3ilhA_ 44.9 11 PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii 13 d1qapa1 44.5 8 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 14 c3pm7A_ 42.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184 15 c2k1oA_ 37.7 19 PDB header:gene regulation Chain: A: PDB Molecule:putative; PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564). 16 c2yxxA_ 35.7 16 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) 17 c3btnA_ 35.1 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:antizyme inhibitor 1; PDBTitle: crystal structure of antizyme inhibitor, an ornithine2 decarboxylase homologous protein 18 c3obhA_ 33.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104 19 c3pajA_ 33.0 11 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961 20 d1qpoa1 30.9 9 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 21 c2y5sA_ not modelled 30.5 12 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 22 d1t0kb_ not modelled 30.2 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 23 c3gl9B_ not modelled 30.2 15 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 24 c3eqzB_ not modelled 29.7 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea 25 d1k66a_ not modelled 29.2 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 26 d1ajza_ not modelled 27.4 14 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 27 d2obba1 not modelled 27.2 7 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 28 c3khtA_ not modelled 26.5 12 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 29 c3eywA_ not modelled 25.8 18 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 30 c2qv0A_ not modelled 25.1 15 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 31 c3cz5B_ not modelled 24.7 8 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 32 c3n53B_ not modelled 24.6 10 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 33 d1d7ka2 not modelled 23.4 8 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 34 c1qpoA_ not modelled 22.2 9 PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis 35 d2i7pa1 not modelled 21.6 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 36 c3cnbC_ not modelled 20.2 11 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 37 c3m6mF_ not modelled 19.8 25 PDB header:lyase/transferase Chain: F: PDB Molecule:sensory/regulatory protein rpfc; PDBTitle: crystal structure of rpff complexed with rec domain of rpfc 38 c3q41B_ not modelled 19.4 11 PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) 39 d1kgsa1 not modelled 18.4 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 40 d1a04a2 not modelled 17.3 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 41 c3hebB_ not modelled 16.9 13 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator receiver domain protein (chey); PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum 42 c2on3A_ not modelled 16.8 8 PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane 43 d2i7na2 not modelled 16.7 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 44 d1hkva2 not modelled 16.5 19 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 45 c2qvgA_ not modelled 16.4 8 PDB header:transferase Chain: A: PDB Molecule:two component response regulator; PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila 46 d1ad1a_ not modelled 16.1 18 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 47 d1dd9a_ not modelled 15.5 17 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 48 c1dd9A_ not modelled 15.5 17 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 49 c3cg0A_ not modelled 15.4 13 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 50 c2bmbA_ not modelled 15.1 20 PDB header:transferase Chain: A: PDB Molecule:folic acid synthesis protein fol1; PDBTitle: x-ray structure of the bifunctional 6-hydroxymethyl-7,8-2 dihydroxypterin pyrophosphokinase dihydropteroate synthase3 from saccharomyces cerevisiae 51 c1x1oC_ not modelled 14.9 11 PDB header:transferase Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8 52 c2qsjB_ not modelled 14.8 12 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 53 d1i3ca_ not modelled 14.4 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 54 c2is8A_ not modelled 13.5 13 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 55 c2oqrA_ not modelled 13.0 19 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 56 c3eulB_ not modelled 13.0 9 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 57 d1k3ra2 not modelled 13.0 9 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 58 c3q9vB_ not modelled 12.8 8 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra c-terminal domain(123-221) from deinococcus2 radiodurans 59 d1oqya2 not modelled 12.7 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 60 d2r25b1 not modelled 12.6 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 c2zkr6_ not modelled 12.5 10 PDB header:ribosomal protein/rna Chain: 6: PDB Molecule:60s ribosomal protein l30e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 62 d1o4ua1 not modelled 12.5 16 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 63 c2dzaA_ not modelled 12.4 15 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate 64 c3c3wB_ not modelled 12.3 8 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 65 c2o0tB_ not modelled 12.3 18 PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation 66 c3kyiB_ not modelled 12.1 13 PDB header:transferase Chain: B: PDB Molecule:chey6 protein; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 67 d1w41a1 not modelled 12.0 22 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 68 d1t6t1_ not modelled 11.9 17 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 69 c2qxyB_ not modelled 11.9 18 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 70 d1mb3a_ not modelled 11.9 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 71 d2f1fa1 not modelled 11.6 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 72 c3h5iA_ not modelled 11.4 11 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 73 c2a5hC_ not modelled 11.2 25 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 74 d2fgca2 not modelled 11.1 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 75 c3h6hB_ not modelled 11.1 10 PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form 76 d2bo1a1 not modelled 10.9 16 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 77 c2k5jB_ not modelled 10.8 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 78 c3cpqB_ not modelled 10.7 14 PDB header:ribosomal protein Chain: B: PDB Molecule:50s ribosomal protein l30e; PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044) 79 c3luaA_ not modelled 10.4 14 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum 80 c2zayA_ not modelled 10.4 5 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 81 d1dz3a_ not modelled 10.4 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 82 c2yr1B_ not modelled 10.2 13 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426 83 c3n2bD_ not modelled 10.2 14 PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. 84 c3cg4A_ not modelled 10.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 85 c1rnlA_ not modelled 10.2 12 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 86 c1k3rA_ not modelled 10.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 87 d1o57a2 not modelled 10.1 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 88 c1a2oB_ not modelled 10.0 12 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 89 c3lufB_ not modelled 10.0 7 PDB header:signaling protein Chain: B: PDB Molecule:two-component system response regulator/ggdef PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein 90 c3smpA_ not modelled 9.8 11 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha 91 d1nyra3 not modelled 9.8 11 Fold:RRF/tRNA synthetase additional domain-like Superfamily:ThrRS/AlaRS common domain Family:Threonyl-tRNA synthetase (ThrRS), second 'additional' domain 92 c3c3mA_ not modelled 9.7 14 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 93 c3jteA_ not modelled 9.6 12 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 94 c2y7eA_ not modelled 9.5 16 PDB header:lyase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form) 95 c3t8yA_ not modelled 9.5 10 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 96 d1u0sy_ not modelled 9.4 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 97 d1bs0a_ not modelled 9.3 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 98 c2i7pA_ not modelled 9.2 14 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 99 d2pc6a2 not modelled 9.1 6 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0