Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00935
DateWed Jan 25 15:20:10 GMT 2012
Unique Job IDccc038644b74c839

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1cs1a_
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
Confidence and coverage
Confidence:100.0% Coverage: 99%
383 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRA
Secondary structure 
SS confidence 
Disorder  ??????
?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  FVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAML
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  SFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........370.........380......
Sequence  RISTGIEDGEDLIADLENGFRAANKG
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1cs1 chain A

3D model

Region: 3 - 386
Aligned: 383
Modelled: 384
Confidence: 100.0%
Identity: 100%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3ndn chain C

3D model

Region: 4 - 380
Aligned: 375
Modelled: 377
Confidence: 100.0%
Identity: 34%
PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate

Phyre2

PDB 1qgn chain A

3D model

Region: 1 - 383
Aligned: 382
Modelled: 383
Confidence: 100.0%
Identity: 34%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2nmp chain C

3D model

Region: 3 - 385
Aligned: 380
Modelled: 383
Confidence: 100.0%
Identity: 41%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase

Phyre2

PDB 2ctz chain A domain 1

3D model

Region: 4 - 380
Aligned: 377
Modelled: 377
Confidence: 100.0%
Identity: 33%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1y4i chain A domain 1

3D model

Region: 2 - 383
Aligned: 382
Modelled: 382
Confidence: 100.0%
Identity: 36%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1e5e chain A

3D model

Region: 2 - 385
Aligned: 383
Modelled: 384
Confidence: 100.0%
Identity: 37%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2cb1 chain A

3D model

Region: 4 - 382
Aligned: 374
Modelled: 373
Confidence: 100.0%
Identity: 36%
PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.

Phyre2

PDB 1n8p chain A

3D model

Region: 1 - 383
Aligned: 380
Modelled: 383
Confidence: 100.0%
Identity: 38%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1i41 chain J

3D model

Region: 3 - 383
Aligned: 380
Modelled: 381
Confidence: 100.0%
Identity: 34%
PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa

Phyre2

PDB 1ibj chain C

3D model

Region: 6 - 383
Aligned: 375
Modelled: 378
Confidence: 100.0%
Identity: 39%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana

Phyre2

PDB 1ibj chain A

3D model

Region: 6 - 383
Aligned: 375
Modelled: 378
Confidence: 100.0%
Identity: 39%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2gqn chain B

3D model

Region: 3 - 383
Aligned: 378
Modelled: 381
Confidence: 100.0%
Identity: 31%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide

Phyre2

PDB 1cl1 chain A

3D model

Region: 4 - 383
Aligned: 376
Modelled: 380
Confidence: 100.0%
Identity: 30%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3aem chain D

3D model

Region: 6 - 381
Aligned: 373
Modelled: 376
Confidence: 100.0%
Identity: 36%
PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate

Phyre2

PDB 3qi6 chain B

3D model

Region: 2 - 380
Aligned: 370
Modelled: 379
Confidence: 100.0%
Identity: 41%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99

Phyre2

PDB 3e6g chain A

3D model

Region: 4 - 379
Aligned: 364
Modelled: 376
Confidence: 100.0%
Identity: 46%
PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae

Phyre2

PDB 1gc0 chain A

3D model

Region: 1 - 383
Aligned: 353
Modelled: 353
Confidence: 100.0%
Identity: 38%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3ri6 chain A

3D model

Region: 49 - 380
Aligned: 322
Modelled: 332
Confidence: 100.0%
Identity: 32%
PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes

Phyre2

PDB 1pff chain A

3D model

Region: 56 - 383
Aligned: 327
Modelled: 328
Confidence: 100.0%
Identity: 38%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2
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d1cs1a_
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c3ndnC_
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d1qgna_
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c2nmpC_
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d2ctza1
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d1y4ia1
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d1e5ea_
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c2cb1A_
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d1n8pa_
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c1i41J_
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c1ibjC_
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d1ibja_
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c2gqnB_
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d1cl1a_
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c3aemD_
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c3qi6B_
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c3e6gA_
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d1gc0a_
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c3ri6A_
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d1pffa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1cs1a_
100.0 100 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
2c3ndnC_
100.0 34 PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
3d1qgna_
100.0 34 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
4c2nmpC_
100.0 41 PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
5d2ctza1
100.0 33 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
6d1y4ia1
100.0 36 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
7d1e5ea_
100.0 37 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
8c2cb1A_
100.0 36 PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
9d1n8pa_
100.0 38 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
10c1i41J_
100.0 34 PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa
11c1ibjC_
100.0 39 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana
12d1ibja_
100.0 39 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
13c2gqnB_
100.0 31 PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
14d1cl1a_
100.0 30 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
15c3aemD_
100.0 36 PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
16c3qi6B_
100.0 41 PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99
17c3e6gA_
100.0 46 PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae
18d1gc0a_
100.0 38 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
19c3ri6A_
100.0 32 PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes
20d1pffa_
100.0 38 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
21c3ht4B_
not modelled 100.0 20 PDB header:lyase
Chain: B: PDB Molecule:aluminum resistance protein;
PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213
22c3hvyC_
not modelled 100.0 20 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution
23c3fd0B_
not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution
24c3bcxA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
25d1b9ha_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
26c2po3B_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
27c2c7tA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
28d1mdoa_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
29d1o69a_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30c3frkB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
31c2ogeC_
not modelled 100.0 15 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
32c3caiA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
33c2r0tA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
34c3ju7B_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
35c3gwpA_
not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance;
PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution
36c3uwcA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
37c3nysA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
38c3dr4B_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
39c3hqtB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
40c2w8wA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
41d1jf9a_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
42c3a2bA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
43d2fnua1
not modelled 100.0 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
44d1qz9a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
45d2bwna1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
46d1bs0a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
47c3e9kA_
not modelled 100.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
48c3nnkC_
not modelled 100.0 16 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
49d1vjoa_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
50d1dfoa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
51c2hdyA_
not modelled 100.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
52c3ecdC_
not modelled 100.0 16 PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
53d1kl1a_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
54d2hoxa1
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
55c3b46B_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
56d1x0ma1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
57c2hzpA_
not modelled 100.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
58c3h14A_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
59c2dkjB_
not modelled 100.0 19 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
60c3lwsF_
not modelled 100.0 16 PDB header:lyase
Chain: F: PDB Molecule:aromatic amino acid beta-eliminating
PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
61c3f0hA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
62d1w7la_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
63c3tqxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
64d1fc4a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
65c1ynuA_
not modelled 99.9 20 PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
66c3hdoB_
not modelled 99.9 18 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
67c3pplB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
68c3pj0D_
not modelled 99.9 16 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
69c3islA_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
70d2r5ea1
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
71c3jtxB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
72c3ihjA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp
73d1m6sa_
not modelled 99.9 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
74d1t3ia_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
75c3dc1A_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
76c3mafB_
not modelled 99.9 16 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
77d1wsta1
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
78c3kaxB_
not modelled 99.9 13 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
79c2z9wA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
80c2dr1A_
not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
81d1bw0a_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
82d1h0ca_
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
83c3op7A_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
84c3e2yB_
not modelled 99.9 14 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
85d1c4ka2
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
86d1iaya_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
87c3n0lA_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
88c3lvmB_
not modelled 99.9 18 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
89c2zc0C_
not modelled 99.9 14 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
90c3if2B_
not modelled 99.9 17 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution
91d1m7ya_
not modelled 99.9 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
92c3nraA_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
93d2ch1a1
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
94c3eucB_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
95c3g7qA_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:valine-pyruvate aminotransferase;
PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution
96c3dzzB_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
97c3ftbA_
not modelled 99.9 10 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
98d1tpla_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
99c3cbfA_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
100c1d2fB_
not modelled 99.9 16 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
101c3hbxB_
not modelled 99.9 17 PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
102d1j32a_
not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
103c2huuA_
not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
104c3l8aB_
not modelled 99.9 16 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
105d1vp4a_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
106d1b5pa_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
107d1c7na_
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
108c2zy3A_
not modelled 99.9 17 PDB header:lyase
Chain: A: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
109d1xi9a_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
110d2c0ra1
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
111d1o4sa_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
112d1svva_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
113d1wyua1
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
114d1p3wa_
not modelled 99.9 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
115d1fg7a_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
116c2o0rA_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
117c3fdbA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase;
PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
118c2x5fB_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5'
PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase
119c3ez1A_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase mocr family;
PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution
120c3mc6C_
not modelled 99.9 15 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0