Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	A	Q	I	N	N	I	R	P	E	F	D	R	E	I	V	D	I	V	D	Y	V	M	N	Y	E	I	S	S	K	V	A	Y	D	T	A	H	Y	C	L	L	D	T	L	G	C	G	L	E	A	L	E	Y	P	A	C	K	K	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	G	P	I	V	P	G	T	V	V	P	N	G	V	R	V	P	G	T	Q	F	Q	L	D	P	V	Q	A	A	F	N	I	G	A	M	I	R	W	L	D	F	N	D	T	W	L	A	A	E	W	G	H	P	S	D	N	L	G	G	I
Secondary structure
SS confidence
Disorder							?	?	?			?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	A	T	A	D	W	L	S	R	N	A	V	A	S	G	K	A	P	L	T	M	K	Q	V	L	T	A	M	I	K	A	H	E	I	Q	G	C	I	A	L	E	N	S	F	N	R	V	G	L	D	H	V	L	L	V	K	V	A	S	T
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	V	V	A	E	M	L	G	L	T	R	E	E	I	L	N	A	V	S	L	A	W	V	D	G	Q	S	L	R	T	Y	R	H	A	P	N	T	G	T	R	K	S	W	A	A	G	D	A	T	S	R	A	V	R	L	A	L	M	A	K
Secondary structure
SS confidence
Disorder																																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	G	E	M	G	Y	P	S	A	L	T	A	P	V	W	G	F	Y	D	V	S	F	K	G	E	S	F	R	F	Q	R	P	Y	G	S	Y	V	M	E	N	V	L	F	K	I	S	F	P	A	E	F	H	S	Q	T	A	V	E	A	A
Secondary structure
SS confidence
Disorder							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		M	T	L	Y	E	Q	M	Q	A	A	G	K	T	A	A	D	I	E	K	V	T	I	R	T	H	E	A	C	I	R	I	I	D	K	K	G	P	L	N	N	P	A	D	R	D	H	C	I	Q	Y	M	V	A	I	P	L	L	F	G	R
Secondary structure
SS confidence
Disorder											?	?		?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	T	A	A	D	Y	E	D	N	V	A	Q	D	K	R	I	D	A	L	R	E	K	I	N	C	F	E	D	P	A	F	T	A	D	Y	H	D	P	E	K	R	A	I	A	N	A	I	T	L	E	F	T	D	G	T	R	F	E	E	V
Secondary structure
SS confidence
Disorder																																						?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	V	E	Y	P	I	G	H	A	R	R	R	Q	D	G	I	P	K	L	V	D	K	F	K	I	N	L	A	R	Q	F	P	T	R	Q	Q	Q	R	I	L	E	V	S	L	D	R	A	R	L	E	Q	M	P	V	N	E	Y	L	D	L
Secondary structure
SS confidence
Disorder											?		?	?		?																																													?
Disorder confidence
		.	.	.
Sequence		Y	V	I
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1szq chain A Region: 11 - 483 Aligned: 473 Modelled: 473 Confidence: 100.0% Identity: 97% Fold: 2-methylcitrate dehydratase PrpD Superfamily: 2-methylcitrate dehydratase PrpD Family: 2-methylcitrate dehydratase PrpD Phyre2 PDB 2hp0 chain A Region: 14 - 477 Aligned: 434 Modelled: 459 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:ids-epimerase; PDBTitle: crystal structure of iminodisuccinate epimerase Phyre2 PDB 2a1j chain A domain 1 Region: 449 - 481 Aligned: 33 Modelled: 33 Confidence: 33.6% Identity: 9% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: Hef domain-like Phyre2 PDB 2aq0 chain A domain 1 Region: 449 - 481 Aligned: 33 Modelled: 33 Confidence: 31.8% Identity: 9% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: Hef domain-like Phyre2 PDB 1vqz chain A domain 1 Region: 406 - 482 Aligned: 69 Modelled: 77 Confidence: 24.8% Identity: 10% Fold: SufE/NifU Superfamily: SufE/NifU Family: SP1160 C-terminal domain-like Phyre2 PDB 3cw1 chain D Region: 404 - 424 Aligned: 21 Modelled: 21 Confidence: 19.5% Identity: 19% PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp Phyre2 PDB 1b34 chain A Region: 404 - 424 Aligned: 21 Modelled: 21 Confidence: 17.8% Identity: 19% PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain Phyre2 PDB 1b34 chain A Region: 404 - 424 Aligned: 21 Modelled: 21 Confidence: 17.8% Identity: 19% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1i8f chain A Region: 400 - 424 Aligned: 25 Modelled: 25 Confidence: 16.9% Identity: 8% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 3cw1 chain 5 Region: 403 - 424 Aligned: 22 Modelled: 22 Confidence: 15.9% Identity: 9% PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp Phyre2 PDB 2jfg chain A domain 3 Region: 177 - 198 Aligned: 22 Modelled: 22 Confidence: 15.9% Identity: 27% Fold: Ribokinase-like Superfamily: MurD-like peptide ligases, catalytic domain Family: MurCDEF Phyre2 PDB 2fwk chain B Region: 404 - 424 Aligned: 21 Modelled: 21 Confidence: 15.9% Identity: 19% PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5 Phyre2 PDB 1d3b chain A Region: 404 - 424 Aligned: 21 Modelled: 21 Confidence: 15.1% Identity: 19% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1j6u chain A domain 3 Region: 177 - 199 Aligned: 23 Modelled: 23 Confidence: 15.1% Identity: 17% Fold: Ribokinase-like Superfamily: MurD-like peptide ligases, catalytic domain Family: MurCDEF Phyre2 PDB 3swn chain T Region: 400 - 424 Aligned: 25 Modelled: 25 Confidence: 15.0% Identity: 8% PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings Phyre2 PDB 3bw1 chain A Region: 400 - 424 Aligned: 25 Modelled: 25 Confidence: 15.0% Identity: 4% PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation Phyre2 PDB 3pgw chain Q Region: 403 - 424 Aligned: 22 Modelled: 22 Confidence: 14.5% Identity: 18% PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp Phyre2 PDB 1i4k chain 1 Region: 403 - 424 Aligned: 22 Modelled: 22 Confidence: 14.4% Identity: 14% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1mgq chain A Region: 403 - 424 Aligned: 22 Modelled: 22 Confidence: 13.1% Identity: 9% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 3cw1 chain A Region: 403 - 424 Aligned: 22 Modelled: 22 Confidence: 13.1% Identity: 18% PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp Phyre2 1 d1szqa_ 2 c2hp0A_ 3 d2a1ja1 4 d2aq0a1 5 d1vqza1 6 c3cw1D_ 7 c1b34A_ 8 d1b34a_ 9 d1i8fa_ 10 c3cw15_ 11 d2jfga3 12 c2fwkB_ 13 d1d3ba_ 14 d1j6ua3 15 c3swnT_ 16 c3bw1A_ 17 c3pgwQ_ 18 d1i4k1_ 19 d1mgqa_ 20 c3cw1A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1szqa_ 100.0 97 Fold:2-methylcitrate dehydratase PrpD Superfamily:2-methylcitrate dehydratase PrpD Family:2-methylcitrate dehydratase PrpD 2 c2hp0A_ 100.0 16 PDB header:isomerase Chain: A: PDB Molecule:ids-epimerase; PDBTitle: crystal structure of iminodisuccinate epimerase 3 d2a1ja1 33.6 9 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 4 d2aq0a1 31.8 9 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 5 d1vqza1 24.8 10 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 6 c3cw1D_ 19.5 19 PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp 7 c1b34A_ 17.8 19 PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 8 d1b34a_ 17.8 19 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 9 d1i8fa_ 16.9 8 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 10 c3cw15_ 15.9 9 PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp 11 d2jfga3 15.9 27 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 12 c2fwkB_ 15.9 19 PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5 13 d1d3ba_ 15.1 19 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 14 d1j6ua3 15.1 17 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 15 c3swnT_ 15.0 8 PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 16 c3bw1A_ 15.0 4 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation 17 c3pgwQ_ 14.5 18 PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 18 d1i4k1_ 14.4 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 19 d1mgqa_ 13.1 9 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 20 c3cw1A_ 13.1 18 PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp 21 c3pgwB_ not modelled 12.5 18 PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 22 d1pzna1 not modelled 12.5 6 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 23 d1e6va2 not modelled 12.4 23 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 24 d1jbma_ not modelled 12.2 8 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 25 c3swnA_ not modelled 12.0 10 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 26 d2fwka1 not modelled 12.0 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 27 d1h641_ not modelled 11.7 16 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 28 d1d3bb_ not modelled 11.5 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 29 c3cw1Z_ not modelled 11.3 10 PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp 30 d1kfta_ not modelled 11.3 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 31 c1kftA_ not modelled 11.3 16 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 32 d2bgwa1 not modelled 10.7 22 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 33 d1m5q1_ not modelled 10.7 10 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 34 d1th7a1 not modelled 10.6 9 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 35 d2i1qa1 not modelled 10.4 16 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 36 c3swnC_ not modelled 10.3 18 PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 37 d1d3bl_ not modelled 10.2 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 38 d1kn0a_ not modelled 10.0 21 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 39 c3iacA_ not modelled 9.7 6 PDB header:isomerase Chain: A: PDB Molecule:glucuronate isomerase; PDBTitle: 2.2 angstrom crystal structure of glucuronate isomerase from2 salmonella typhimurium. 40 d1gg4a4 not modelled 8.8 18 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 41 d1bjna_ not modelled 8.6 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 42 d2a1jb1 not modelled 8.1 9 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 43 d1e8ca3 not modelled 8.1 14 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 44 c1y7wB_ not modelled 8.1 8 PDB header:lyase Chain: B: PDB Molecule:halotolerant alpha-type carbonic anhydrase (dca ii); PDBTitle: crystal structure of a halotolerant carbonic anhydrase from dunaliella2 salina 45 c2e12B_ not modelled 8.0 25 PDB header:translation Chain: B: PDB Molecule:hypothetical protein xcc3642; PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif 46 d1dw0a_ not modelled 7.9 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 47 d1o5za2 not modelled 7.5 19 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase 48 c1b34B_ not modelled 7.5 5 PDB header:rna binding protein Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 49 d1b34b_ not modelled 7.5 5 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 50 c3k8rA_ not modelled 7.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution 51 d1vlfm2 not modelled 7.1 7 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3 52 c2k1vB_ not modelled 6.8 25 PDB header:hormone Chain: B: PDB Molecule:relaxin-3; PDBTitle: r3/i5 relaxin chimera 53 c1h2iG_ not modelled 6.7 21 PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain 54 c2dfwA_ not modelled 6.6 14 PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3 55 d1vp7b_ not modelled 6.5 11 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 56 d1p3da3 not modelled 6.5 30 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 57 d2f02a1 not modelled 6.3 10 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 58 c1vqzA_ not modelled 6.1 9 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 59 d1x2ia1 not modelled 6.0 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 60 d1sg5a1 not modelled 6.0 28 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like 61 c1xhoB_ not modelled 5.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:chorismate mutase; PDBTitle: chorismate mutase from clostridium thermocellum cth-682 62 d1xhoa_ not modelled 5.9 17 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 63 d1vp7a_ not modelled 5.8 11 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 64 d1gu2a_ not modelled 5.8 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 65 d1ju3a2 not modelled 5.8 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PepX catalytic domain-like 66 c3eagA_ not modelled 5.4 14 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides 67 d1fnja_ not modelled 5.1 10 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0