Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	K	F	I	K	H	T	G	L	V	V	P	L	D	A	A	N	V	D	T	D	A	I	I	P	K	Q	F	L	Q	K	V	T	R	T	G	F	G	A	H	L	F	N	D	W	R	F	L	D	E	K	G	Q	Q	P	N	P	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	V	L	N	F	P	Q	Y	Q	G	A	S	I	L	L	A	R	E	N	F	G	C	G	S	S	R	E	H	A	P	W	A	L	T	D	Y	G	F	K	V	V	I	A	P	S	F	A	D	I	F	Y	G	N	S	F	N	N	Q	L	L
Secondary structure
SS confidence
Disorder									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	V	K	L	S	D	A	E	V	D	E	L	F	A	L	V	K	A	N	P	G	I	H	F	D	V	D	L	E	A	Q	E	V	K	A	G	E	K	T	Y	R	F	T	I	D	A	F	R	R	H	C	M	M	N	G	L	D	S	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Sequence		L	T	L	Q	H	D	D	A	I	A	A	Y	E	A	K	Q	P	A	F	M	N
Secondary structure
SS confidence
Disorder																	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3q3w chain B Region: 2 - 181 Aligned: 180 Modelled: 179 Confidence: 100.0% Identity: 50% PDB header:transferase Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni. Phyre2 PDB 2hcu chain A Region: 1 - 177 Aligned: 173 Modelled: 177 Confidence: 100.0% Identity: 47% PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans Phyre2 PDB 3h5j chain A Region: 3 - 177 Aligned: 167 Modelled: 175 Confidence: 100.0% Identity: 45% PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis Phyre2 PDB 1v7l chain A Region: 7 - 187 Aligned: 157 Modelled: 172 Confidence: 100.0% Identity: 30% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LeuD/IlvD-like Family: LeuD-like Phyre2 PDB 2pkp chain A Region: 7 - 186 Aligned: 157 Modelled: 180 Confidence: 100.0% Identity: 31% PDB header:lyase Chain: A: PDB Molecule:homoaconitase small subunit; PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271) Phyre2 PDB 1aco chain A domain 1 Region: 1 - 195 Aligned: 182 Modelled: 194 Confidence: 100.0% Identity: 21% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LeuD/IlvD-like Family: LeuD-like Phyre2 PDB 2b3y chain A domain 1 Region: 2 - 188 Aligned: 183 Modelled: 187 Confidence: 100.0% Identity: 21% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LeuD/IlvD-like Family: LeuD-like Phyre2 PDB 1l5j chain A domain 2 Region: 6 - 195 Aligned: 178 Modelled: 183 Confidence: 100.0% Identity: 20% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LeuD/IlvD-like Family: LeuD-like Phyre2 PDB 2b3y chain B Region: 2 - 186 Aligned: 180 Modelled: 185 Confidence: 100.0% Identity: 23% PDB header:lyase Chain: B: PDB Molecule:iron-responsive element binding protein 1; PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1) Phyre2 PDB 5acn chain A Region: 2 - 175 Aligned: 169 Modelled: 174 Confidence: 100.0% Identity: 21% PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal Phyre2 PDB 1l5j chain B Region: 7 - 194 Aligned: 177 Modelled: 185 Confidence: 99.7% Identity: 22% PDB header:lyase Chain: B: PDB Molecule:aconitate hydratase 2; PDBTitle: crystal structure of e. coli aconitase b. Phyre2 PDB 1t6z chain B Region: 70 - 104 Aligned: 35 Modelled: 35 Confidence: 65.4% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 Phyre2 PDB 1eo1 chain A Region: 81 - 145 Aligned: 65 Modelled: 65 Confidence: 56.3% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Nitrogenase accessory factor-like Family: MTH1175-like Phyre2 PDB 2yx6 chain C Region: 67 - 140 Aligned: 74 Modelled: 74 Confidence: 56.2% Identity: 9% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein ph0822; PDBTitle: crystal structure of ph0822 Phyre2 PDB 3op1 chain A Region: 60 - 105 Aligned: 46 Modelled: 46 Confidence: 55.4% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae Phyre2 PDB 1o13 chain A Region: 82 - 140 Aligned: 59 Modelled: 59 Confidence: 51.8% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Nitrogenase accessory factor-like Family: MTH1175-like Phyre2 PDB 1rdu chain A Region: 73 - 140 Aligned: 68 Modelled: 68 Confidence: 49.3% Identity: 9% Fold: Ribonuclease H-like motif Superfamily: Nitrogenase accessory factor-like Family: MTH1175-like Phyre2 PDB 2qtd chain A Region: 87 - 140 Aligned: 53 Modelled: 54 Confidence: 46.4% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein mj0327; PDBTitle: crystal structure of a putative dinitrogenase (mj0327) from2 methanocaldococcus jannaschii dsm at 1.70 a resolution Phyre2 PDB 1t3v chain A Region: 59 - 140 Aligned: 82 Modelled: 82 Confidence: 41.1% Identity: 13% Fold: Ribonuclease H-like motif Superfamily: Nitrogenase accessory factor-like Family: MTH1175-like Phyre2 PDB 2wfb chain A Region: 82 - 140 Aligned: 59 Modelled: 59 Confidence: 36.7% Identity: 8% PDB header:biosynthetic protein Chain: A: PDB Molecule:putative uncharacterized protein orp; PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas Phyre2 1 c3q3wB_ 2 c2hcuA_ 3 c3h5jA_ 4 d1v7la_ 5 c2pkpA_ 6 d1acoa1 7 d2b3ya1 8 d1l5ja2 9 c2b3yB_ 10 c5acnA_ 11 c1l5jB_ 12 c1t6zB_ 13 d1eo1a_ 14 c2yx6C_ 15 c3op1A_ 16 d1o13a_ 17 d1rdua_ 18 c2qtdA_ 19 d1t3va_ 20 c2wfbA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3q3wB_ 100.0 50 PDB header:transferase Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni. 2 c2hcuA_ 100.0 47 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans 3 c3h5jA_ 100.0 45 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis 4 d1v7la_ 100.0 30 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 5 c2pkpA_ 100.0 31 PDB header:lyase Chain: A: PDB Molecule:homoaconitase small subunit; PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271) 6 d1acoa1 100.0 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 7 d2b3ya1 100.0 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 8 d1l5ja2 100.0 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 9 c2b3yB_ 100.0 23 PDB header:lyase Chain: B: PDB Molecule:iron-responsive element binding protein 1; PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1) 10 c5acnA_ 100.0 21 PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal 11 c1l5jB_ 99.7 22 PDB header:lyase Chain: B: PDB Molecule:aconitate hydratase 2; PDBTitle: crystal structure of e. coli aconitase b. 12 c1t6zB_ 65.4 20 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 13 d1eo1a_ 56.3 15 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 14 c2yx6C_ 56.2 9 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein ph0822; PDBTitle: crystal structure of ph0822 15 c3op1A_ 55.4 22 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 16 d1o13a_ 51.8 12 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 17 d1rdua_ 49.3 9 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 18 c2qtdA_ 46.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein mj0327; PDBTitle: crystal structure of a putative dinitrogenase (mj0327) from2 methanocaldococcus jannaschii dsm at 1.70 a resolution 19 d1t3va_ 41.1 13 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 20 c2wfbA_ 36.7 8 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative uncharacterized protein orp; PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas 21 c2dlnA_ not modelled 33.9 22 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 22 c1vkzA_ not modelled 32.1 34 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution 23 c3la8A_ not modelled 29.8 18 PDB header:transferase Chain: A: PDB Molecule:putative purine nucleoside phosphorylase; PDBTitle: the crystal structure of smu.1229 from streptococcus mutans ua159 24 d1cmia_ not modelled 29.5 24 Fold:DLC Superfamily:DLC Family:DLC 25 c3c3jA_ not modelled 29.3 24 PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli 26 d1vkza2 not modelled 29.3 45 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 27 d3e2ba1 not modelled 29.0 24 Fold:DLC Superfamily:DLC Family:DLC 28 d1a9xa3 not modelled 28.9 36 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 29 c3t07D_ not modelled 28.2 14 PDB header:transferase/transferase inhibitor Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid 30 d1xjha_ not modelled 28.1 37 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 31 c3uvzB_ not modelled 27.1 20 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase, atpase2 subunit from burkholderia ambifaria 32 c1z34A_ not modelled 26.0 15 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine 33 d1okkd2 not modelled 25.3 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 34 d1nyta1 not modelled 23.9 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 35 c3fj1A_ not modelled 23.9 21 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution 36 c2zj3A_ not modelled 23.9 13 PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase 37 c1m6vE_ not modelled 23.0 26 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 38 d1t0tv_ not modelled 22.3 23 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 39 d2gp4a1 not modelled 21.8 24 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 40 d1zyma2 not modelled 21.6 9 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system 41 c2re2A_ not modelled 21.1 7 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein ta1041; PDBTitle: crystal structure of a putative iron-molybdenum cofactor (femo-co)2 dinitrogenase (ta1041m) from thermoplasma acidophilum dsm 1728 at3 1.30 a resolution 42 d1vdha_ not modelled 20.6 18 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 43 c3bgdB_ not modelled 20.0 21 PDB header:transferase Chain: B: PDB Molecule:thiopurine s-methyltransferase; PDBTitle: thiopurine s-methyltransferase 44 c3pg8B_ not modelled 19.6 14 PDB header:transferase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima 45 d2hi6a1 not modelled 19.5 15 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:AF0055-like 46 d1a9xa4 not modelled 19.3 24 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 47 c2xd4A_ not modelled 19.1 34 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase 48 c3idwA_ not modelled 18.9 14 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 49 c1tcvB_ not modelled 18.9 10 PDB header:transferase Chain: B: PDB Molecule:purine-nucleoside phosphorylase; PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate 50 c2amlB_ not modelled 17.9 18 PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution 51 c2jgqB_ not modelled 17.8 13 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori 52 c3m4qA_ not modelled 17.6 18 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 53 d1oqya1 not modelled 17.4 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 54 c3knzA_ not modelled 17.3 17 PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution 55 c2ip4A_ not modelled 17.0 27 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 56 c3ijrF_ not modelled 16.9 20 PDB header:oxidoreductase Chain: F: PDB Molecule:oxidoreductase, short chain dehydrogenase/reductase family; PDBTitle: 2.05 angstrom resolution crystal structure of a short chain2 dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex3 with nad+ 57 c2cunA_ not modelled 16.7 14 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 58 d1f8fa1 not modelled 16.7 9 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 59 c3cxtA_ not modelled 16.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase with different specificities; PDBTitle: quaternary complex structure of gluconate 5-dehydrogenase from2 streptococcus suis type 2 60 d2btma_ not modelled 16.0 26 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 61 d1d3va_ not modelled 15.6 35 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 62 d1c55a_ not modelled 15.5 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 63 d1uadc_ not modelled 15.1 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Other IPT/TIG domains 64 c2qk4A_ not modelled 14.9 38 PDB header:ligase Chain: A: PDB Molecule:trifunctional purine biosynthetic protein adenosine-3; PDBTitle: human glycinamide ribonucleotide synthetase 65 d1n55a_ not modelled 14.7 21 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 66 d1vhwa_ not modelled 14.6 17 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 67 d1fe0a_ not modelled 14.6 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 68 d1neya_ not modelled 14.2 18 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 69 d2z06a1 not modelled 14.2 29 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TTHA0625-like 70 d1jx4a1 not modelled 14.2 20 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 71 d2ceva_ not modelled 14.1 27 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 72 c3g68A_ not modelled 13.9 26 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution 73 d2bzga1 not modelled 13.9 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Thiopurine S-methyltransferase 74 c1ezaA_ not modelled 13.6 9 PDB header:phosphotransferase Chain: A: PDB Molecule:enzyme i; PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure 75 d1li4a2 not modelled 13.5 31 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:S-adenosylhomocystein hydrolase 76 c1wydB_ not modelled 13.2 26 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 77 d1mvfd_ not modelled 12.9 19 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 78 d2ac7a1 not modelled 12.7 15 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 79 c3rd5A_ not modelled 12.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:mypaa.01249.c; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium paratuberculosis 80 d1xg5a_ not modelled 12.6 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 81 c3kvoB_ not modelled 12.5 22 PDB header:oxidoreductase Chain: B: PDB Molecule:hydroxysteroid dehydrogenase-like protein 2; PDBTitle: crystal structure of the catalytic domain of human hydroxysteroid2 dehydrogenase like 2 (hsdl2) 82 c3bk7A_ not modelled 12.4 18 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 83 c3nn4C_ not modelled 12.3 27 PDB header:oxidoreductase Chain: C: PDB Molecule:chlorite dismutase; PDBTitle: structure of chlorite dismutase from candidatus nitrospira defluvii2 r173k mutant 84 d3c8ya1 not modelled 12.2 25 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 85 c2d2aA_ not modelled 12.0 25 PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters 86 d1mo0a_ not modelled 12.0 18 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 87 d1cb0a_ not modelled 11.8 38 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 88 d1o5xa_ not modelled 11.8 26 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 89 c3fkjA_ not modelled 11.7 18 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution 90 d2bela_ not modelled 11.6 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 91 c1wj9A_ not modelled 11.6 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:crispr-associated protein; PDBTitle: crystal structure of a crispr-associated protein from2 thermus thermophilus 92 c2vxhF_ not modelled 11.6 18 PDB header:oxidoreductase Chain: F: PDB Molecule:chlorite dismutase; PDBTitle: the crystal structure of chlorite dismutase: a detox enzyme2 producing molecular oxygen 93 d1assa_ not modelled 11.4 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 94 c3khsB_ not modelled 11.4 17 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 95 c3fa4D_ not modelled 11.3 11 PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form 96 d1dcfa_ not modelled 11.3 25 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 97 d1reoa1 not modelled 11.3 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 98 d1cyga1 not modelled 11.2 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 99 c3tl6B_ not modelled 11.1 20 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0