Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	D	L	I	S	Q	V	E	D	L	A	G	I	E	I	D	H	T	T	S	M	V	M	I	F	G	I	I	F	L	T	A	V	V	V	H	I	I	L	H	W	V	V	L	R	T	F	E	K	R	A	I	A	S	S	R	L	W	L
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	I	I	T	Q	N	K	L	F	H	R	L	A	F	T	L	Q	G	I	I	V	N	I	Q	A	V	F	W	L	Q	K	G	T	E	A	A	D	I	L	T	T	C	A	Q	L	W	I	M	M	Y	A	L	L	S	V	F	S	L	L	D
Secondary structure
SS confidence
Disorder																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	I	L	N	L	A	Q	K	F	P	A	A	S	Q	L	P	L	K	G	I	F	Q	G	I	K	L	I	G	A	I	L	V	G	I	L	M	I	S	L	L	I	G	Q	S	P	A	I	L	I	S	G	L	G	A	M	A	A	V	L	M
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?																											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	V	F	K	D	P	I	L	G	L	V	A	G	I	Q	L	S	A	N	D	M	L	K	L	G	D	W	L	E	M	P	K	Y	G	A	D	G	A	V	I	D	I	G	L	T	T	V	K	V	R	N	W	D	N	T	I	T	T	I	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	W	S	L	V	S	D	S	F	K	N	W	S	G	M	S	A	S	G	G	R	R	I	K	R	S	I	S	I	D	V	T	S	I	R	F	L	D	E	D	E	M	Q	R	L	N	K	A	H	L	L	K	P	Y	L	T	S	R	H	Q
Secondary structure
SS confidence
Disorder					?		?									?	?	?	?	?	?																															?	?	?	?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	I	N	E	W	N	R	Q	Q	G	S	T	E	S	V	L	N	L	R	R	M	T	N	I	G	T	F	R	A	Y	L	N	E	Y	L	R	N	H	P	R	I	R	K	D	M	T	L	M	V	R	Q	L	A	P	G	D	N	G	L	P
Secondary structure
SS confidence
Disorder										?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Sequence		L	E	I	Y	A	F	T	N	T	V	V	W	L	E	Y	E	S	I	Q	A	D	I	F	D	H	I	F	A	I	V	E	E	F	G	L	R	L	H	Q	S	P	T	G	N	D	I	R	S	L	A	G	A	F	K	Q
Secondary structure
SS confidence
Disorder																																															?	?		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vv5 chain D Region: 101 - 403 Aligned: 244 Modelled: 252 Confidence: 100.0% Identity: 18% PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Phyre2 PDB 2vv5 chain A domain 1 Region: 186 - 253 Aligned: 66 Modelled: 66 Confidence: 99.8% Identity: 23% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Mechanosensitive channel protein MscS (YggB), middle domain Phyre2 PDB 2vv5 chain A domain 2 Region: 257 - 402 Aligned: 93 Modelled: 97 Confidence: 99.2% Identity: 19% Fold: Ferredoxin-like Superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain Family: Mechanosensitive channel protein MscS (YggB), C-terminal domain Phyre2 PDB 2vv5 chain A domain 3 Region: 101 - 184 Aligned: 83 Modelled: 84 Confidence: 98.7% Identity: 14% Fold: Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region Family: Mechanosensitive channel protein MscS (YggB), transmembrane region Phyre2 PDB 1nz9 chain A Region: 201 - 223 Aligned: 23 Modelled: 23 Confidence: 80.7% Identity: 22% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 1npp chain A domain 2 Region: 201 - 223 Aligned: 23 Modelled: 23 Confidence: 78.9% Identity: 17% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2hqh chain A domain 1 Region: 201 - 223 Aligned: 23 Modelled: 23 Confidence: 78.6% Identity: 30% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 PDB 2kvq chain G Region: 201 - 223 Aligned: 23 Modelled: 23 Confidence: 76.8% Identity: 13% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 2jvv chain A Region: 201 - 223 Aligned: 23 Modelled: 23 Confidence: 76.8% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 2e6z chain A Region: 199 - 244 Aligned: 46 Modelled: 46 Confidence: 74.6% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 2zkr chain T Region: 201 - 240 Aligned: 40 Modelled: 40 Confidence: 70.4% Identity: 13% PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2l82 chain A Region: 266 - 398 Aligned: 105 Modelled: 115 Confidence: 69.5% Identity: 16% PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 Phyre2 PDB 1t9h chain A domain 1 Region: 204 - 226 Aligned: 23 Modelled: 23 Confidence: 63.1% Identity: 22% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3p8b chain B Region: 201 - 223 Aligned: 23 Modelled: 23 Confidence: 61.1% Identity: 30% PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Phyre2 PDB 1u0l chain A domain 1 Region: 201 - 222 Aligned: 22 Modelled: 22 Confidence: 60.0% Identity: 23% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2rcn chain A Region: 200 - 230 Aligned: 31 Modelled: 31 Confidence: 59.5% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. Phyre2 PDB 2gvh chain A domain 1 Region: 198 - 230 Aligned: 28 Modelled: 33 Confidence: 56.7% Identity: 14% Fold: Thioesterase/thiol ester dehydrase-isomerase Superfamily: Thioesterase/thiol ester dehydrase-isomerase Family: 4HBT-like Phyre2 PDB 2gvh chain C Region: 198 - 230 Aligned: 28 Modelled: 29 Confidence: 54.3% Identity: 18% PDB header:hydrolase Chain: C: PDB Molecule:agr_l_2016p; PDBTitle: crystal structure of acyl-coa hydrolase (15159470) from agrobacterium2 tumefaciens at 2.65 a resolution Phyre2 PDB 2eyq chain A domain 1 Region: 195 - 244 Aligned: 49 Modelled: 50 Confidence: 53.7% Identity: 16% Fold: SH3-like barrel Superfamily: CarD-like Family: CarD-like Phyre2 PDB 2yv5 chain A Region: 199 - 240 Aligned: 42 Modelled: 42 Confidence: 52.5% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus Phyre2 1 c2vv5D_ 2 d2vv5a1 3 d2vv5a2 4 d2vv5a3 5 d1nz9a_ 6 d1nppa2 7 d2hqha1 8 c2kvqG_ 9 c2jvvA_ 10 c2e6zA_ 11 c2zkrt_ 12 c2l82A_ 13 d1t9ha1 14 c3p8bB_ 15 d1u0la1 16 c2rcnA_ 17 d2gvha1 18 c2gvhC_ 19 d2eyqa1 20 c2yv5A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vv5D_ 100.0 18 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 2 d2vv5a1 99.8 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 3 d2vv5a2 99.2 19 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 4 d2vv5a3 98.7 14 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 5 d1nz9a_ 80.7 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 6 d1nppa2 78.9 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 7 d2hqha1 78.6 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 8 c2kvqG_ 76.8 13 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 9 c2jvvA_ 76.8 13 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 10 c2e6zA_ 74.6 13 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 11 c2zkrt_ 70.4 13 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 12 c2l82A_ 69.5 16 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 13 d1t9ha1 63.1 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 c3p8bB_ 61.1 30 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 15 d1u0la1 60.0 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 16 c2rcnA_ 59.5 19 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 17 d2gvha1 56.7 14 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 18 c2gvhC_ 54.3 18 PDB header:hydrolase Chain: C: PDB Molecule:agr_l_2016p; PDBTitle: crystal structure of acyl-coa hydrolase (15159470) from agrobacterium2 tumefaciens at 2.65 a resolution 19 d2eyqa1 53.7 16 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 20 c2yv5A_ 52.5 17 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 21 d1whka_ not modelled 52.5 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 22 d1whma_ not modelled 51.6 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 23 d1y7ua1 not modelled 50.9 25 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 24 c1t9hA_ not modelled 50.7 22 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 25 c3b7kA_ not modelled 50.3 25 PDB header:hydrolase Chain: A: PDB Molecule:acyl-coenzyme a thioesterase 12; PDBTitle: human acyl-coenzyme a thioesterase 12 26 d2gvha2 not modelled 45.3 19 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 27 c1m1gB_ not modelled 44.2 18 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 28 d2coya1 not modelled 43.8 28 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 29 c4a1cS_ not modelled 43.0 18 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 30 d1ylia1 not modelled 42.3 18 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 31 d1vpma_ not modelled 41.1 32 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 32 d2cqaa1 not modelled 38.8 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 33 c4a2iV_ not modelled 38.8 21 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 34 d1vqot1 not modelled 38.5 32 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 35 c1u0lB_ not modelled 37.0 22 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 36 c2v1oF_ not modelled 35.1 11 PDB header:hydrolase Chain: F: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of n-terminal domain of acyl-coa2 thioesterase 7 37 d2cp6a1 not modelled 35.0 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 38 d2do3a1 not modelled 33.9 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 39 d1ppje2 not modelled 33.7 8 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 40 c3iz5Y_ not modelled 31.8 18 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 41 d1yvca1 not modelled 31.4 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 42 d1yeza1 not modelled 30.7 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 43 c2qq2C_ not modelled 30.0 11 PDB header:hydrolase Chain: C: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of c-terminal domain of human acyl-coa thioesterase2 7 44 d2coza1 not modelled 29.7 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 45 c2xhcA_ not modelled 29.3 22 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 46 d1bcce2 not modelled 28.6 8 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 47 c2z0wA_ not modelled 27.7 24 PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer 48 c3d6lA_ not modelled 27.1 23 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of cj0915, a hexameric hotdog fold2 thioesterase of campylobacter jejuni 49 d2e3ha1 not modelled 26.9 33 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 50 d2cp5a1 not modelled 26.9 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 51 d2cp3a1 not modelled 26.7 33 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 52 c2eisA_ not modelled 26.5 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tthb207; PDBTitle: x-ray structure of acyl-coa hydrolase-like protein, tt1379, from2 thermus thermophilus hb8 53 d2e3ia1 not modelled 26.4 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 d1whja_ not modelled 25.8 32 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 55 c2e4hA_ not modelled 24.7 30 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 56 d1ayia_ not modelled 24.6 24 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 57 d2cowa1 not modelled 24.2 22 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 58 d2cp2a1 not modelled 23.8 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 59 d2vlqa1 not modelled 23.4 24 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 60 c3owvA_ not modelled 23.3 15 PDB header:hydrolase Chain: A: PDB Molecule:dna-entry nuclease; PDBTitle: structural insights into catalytic and substrate binding mechanisms of2 the strategic enda nuclease from streptococcus pneumoniae 61 c2no8A_ not modelled 22.2 30 PDB header:immune system Chain: A: PDB Molecule:colicin-e2 immunity protein; PDBTitle: nmr structure analysis of the colicin immuntiy protein im2 62 d2cp0a1 not modelled 22.2 22 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 63 c3mayE_ not modelled 20.1 27 PDB header:heme-binding protein Chain: E: PDB Molecule:possible exported protein; PDBTitle: crystal structure of a secreted mycobacterium tuberculosis heme-2 binding protein 64 d1gxha_ not modelled 19.9 30 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 65 c3lwgB_ not modelled 19.4 4 PDB header:unknown function Chain: B: PDB Molecule:hp0420 homologue; PDBTitle: crystal structure of hp0420-homologue c46a from helicobacter2 felis 66 d1njjb1 not modelled 18.8 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 67 d1whha_ not modelled 17.4 21 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 68 d2btva_ not modelled 17.2 26 Fold:Reovirus inner layer core protein p3 Superfamily:Reovirus inner layer core protein p3 Family:Orbivirus core 69 c2zqeA_ not modelled 16.4 35 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 70 d2cbpa_ not modelled 16.2 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 71 d1i9ga_ not modelled 15.8 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 72 d2toda1 not modelled 15.6 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 73 d2je6i1 not modelled 15.1 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 c2btvB_ not modelled 14.7 26 PDB header:virus Chain: B: PDB Molecule:protein (vp3 core protein); PDBTitle: atomic model for bluetongue virus (btv) core 75 d1y4oa1 not modelled 14.3 19 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 76 d2ot2a1 not modelled 13.7 20 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 77 d1sroa_ not modelled 13.7 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 78 c1s1iU_ not modelled 13.4 18 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 79 d1bbua1 not modelled 13.3 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 80 d1ws8a_ not modelled 12.6 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 81 d1e1oa1 not modelled 12.3 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 82 d1e32a3 not modelled 12.2 21 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 83 d2g50a1 not modelled 12.1 14 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 84 d3d3ra1 not modelled 12.1 25 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 85 d1r4va_ not modelled 11.8 23 Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein 86 d1g7sa1 not modelled 11.7 26 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 87 c2qlwA_ not modelled 11.6 21 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 88 c2qlxA_ not modelled 11.6 21 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 89 d1wwia1 not modelled 11.5 14 Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein 90 d1ubea2 not modelled 11.5 7 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 91 c2gutA_ not modelled 11.5 23 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 92 d1mo6a2 not modelled 11.5 7 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 93 c3d3rA_ not modelled 11.4 25 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 94 d1d7ka1 not modelled 11.2 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 95 c3g7gG_ not modelled 11.1 18 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0311 protein ca_c3321; PDBTitle: crystal structure of the protein with unknown function from2 clostridium acetobutylicum atcc 824 96 d1g7sa2 not modelled 11.1 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 97 d1e0ta1 not modelled 11.1 21 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 98 d1jera_ not modelled 11.0 29 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 99 c1jerA_ not modelled 11.0 29 PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0