Phyre 2 Results for P0AAT4

Email | l.a.kelley@imperial.ac.uk
Description | P0AAT4
Date | Thu Jan 5 11:13:46 GMT 2012
Unique Job ID | c7fa664ad6996e65

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2vv5D_ |
|  | 100.0 | 18 | PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs
2 | d2vv5a1 |
|  | 99.8 | 23 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain
3 | d2vv5a2 |
|  | 99.2 | 19 | Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
4 | d2vv5a3 |
|  | 98.7 | 14 | Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region
5 | d1nz9a_ |
|  | 80.7 | 22 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain
6 | d1nppa2 |
|  | 78.9 | 17 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain
7 | d2hqha1 |
|  | 78.6 | 30 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
8 | c2kvqG_ |
|  | 76.8 | 13 | PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex
9 | c2jvvA_ |
|  | 76.8 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain
10 | c2e6zA_ |
|  | 74.6 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5
11 | c2zkrt_ |
|  | 70.4 | 13 | PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
12 | c2l82A_ |
|  | 69.5 | 16 | PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32
13 | d1t9ha1 |
|  | 63.1 | 22 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
14 | c3p8bB_ |
|  | 61.1 | 30 | PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5
15 | d1u0la1 |
|  | 60.0 | 23 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
16 | c2rcnA_ |
|  | 59.5 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium.
17 | d2gvha1 |
|  | 56.7 | 14 | Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like
18 | c2gvhC_ |
|  | 54.3 | 18 | PDB header:hydrolase Chain: C: PDB Molecule:agr_l_2016p; PDBTitle: crystal structure of acyl-coa hydrolase (15159470) from agrobacterium2 tumefaciens at 2.65 a resolution
19 | d2eyqa1 |
|  | 53.7 | 16 | Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like
20 | c2yv5A_ |
|  | 52.5 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus
21 | d1whka_ |
| not modelled | 52.5 | 16 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
22 | d1whma_ |
| not modelled | 51.6 | 16 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
23 | d1y7ua1 |
| not modelled | 50.9 | 25 | Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like
24 | c1t9hA_ |
| not modelled | 50.7 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase.
25 | c3b7kA_ |
| not modelled | 50.3 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:acyl-coenzyme a thioesterase 12; PDBTitle: human acyl-coenzyme a thioesterase 12
26 | d2gvha2 |
| not modelled | 45.3 | 19 | Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like
27 | c1m1gB_ |
| not modelled | 44.2 | 18 | PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1)
28 | d2coya1 |
| not modelled | 43.8 | 28 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
29 | c4a1cS_ |
| not modelled | 43.0 | 18 | PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
30 | d1ylia1 |
| not modelled | 42.3 | 18 | Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like
31 | d1vpma_ |
| not modelled | 41.1 | 32 | Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like
32 | d2cqaa1 |
| not modelled | 38.8 | 28 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain
33 | c4a2iV_ |
| not modelled | 38.8 | 21 | PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor
34 | d1vqot1 |
| not modelled | 38.5 | 32 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e
35 | c1u0lB_ |
| not modelled | 37.0 | 22 | PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima
36 | c2v1oF_ |
| not modelled | 35.1 | 11 | PDB header:hydrolase Chain: F: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of n-terminal domain of acyl-coa2 thioesterase 7
37 | d2cp6a1 |
| not modelled | 35.0 | 29 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
38 | d2do3a1 |
| not modelled | 33.9 | 22 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like
39 | d1ppje2 |
| not modelled | 33.7 | 8 | Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor
40 | c3iz5Y_ |
| not modelled | 31.8 | 18 | PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
41 | d1yvca1 |
| not modelled | 31.4 | 19 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain
42 | d1yeza1 |
| not modelled | 30.7 | 11 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain
43 | c2qq2C_ |
| not modelled | 30.0 | 11 | PDB header:hydrolase Chain: C: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of c-terminal domain of human acyl-coa thioesterase2 7
44 | d2coza1 |
| not modelled | 29.7 | 17 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
45 | c2xhcA_ |
| not modelled | 29.3 | 22 | PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg)
46 | d1bcce2 |
| not modelled | 28.6 | 8 | Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor
47 | c2z0wA_ |
| not modelled | 27.7 | 24 | PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer
48 | c3d6lA_ |
| not modelled | 27.1 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of cj0915, a hexameric hotdog fold2 thioesterase of campylobacter jejuni
49 | d2e3ha1 |
| not modelled | 26.9 | 33 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
50 | d2cp5a1 |
| not modelled | 26.9 | 14 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
51 | d2cp3a1 |
| not modelled | 26.7 | 33 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
52 | c2eisA_ |
| not modelled | 26.5 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tthb207; PDBTitle: x-ray structure of acyl-coa hydrolase-like protein, tt1379, from2 thermus thermophilus hb8
53 | d2e3ia1 |
| not modelled | 26.4 | 14 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
54 | d1whja_ |
| not modelled | 25.8 | 32 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
55 | c2e4hA_ |
| not modelled | 24.7 | 30 | PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail
56 | d1ayia_ |
| not modelled | 24.6 | 24 | Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins
57 | d2cowa1 |
| not modelled | 24.2 | 22 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
58 | d2cp2a1 |
| not modelled | 23.8 | 19 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
59 | d2vlqa1 |
| not modelled | 23.4 | 24 | Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins
60 | c3owvA_ |
| not modelled | 23.3 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:dna-entry nuclease; PDBTitle: structural insights into catalytic and substrate binding mechanisms of2 the strategic enda nuclease from streptococcus pneumoniae
61 | c2no8A_ |
| not modelled | 22.2 | 30 | PDB header:immune system Chain: A: PDB Molecule:colicin-e2 immunity protein; PDBTitle: nmr structure analysis of the colicin immuntiy protein im2
62 | d2cp0a1 |
| not modelled | 22.2 | 22 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
63 | c3mayE_ |
| not modelled | 20.1 | 27 | PDB header:heme-binding protein Chain: E: PDB Molecule:possible exported protein; PDBTitle: crystal structure of a secreted mycobacterium tuberculosis heme-2 binding protein
64 | d1gxha_ |
| not modelled | 19.9 | 30 | Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins
65 | c3lwgB_ |
| not modelled | 19.4 | 4 | PDB header:unknown function Chain: B: PDB Molecule:hp0420 homologue; PDBTitle: crystal structure of hp0420-homologue c46a from helicobacter2 felis
66 | d1njjb1 |
| not modelled | 18.8 | 33 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like
67 | d1whha_ |
| not modelled | 17.4 | 21 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
68 | d2btva_ |
| not modelled | 17.2 | 26 | Fold:Reovirus inner layer core protein p3 Superfamily:Reovirus inner layer core protein p3 Family:Orbivirus core
69 | c2zqeA_ |
| not modelled | 16.4 | 35 | PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
70 | d2cbpa_ |
| not modelled | 16.2 | 25 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like
71 | d1i9ga_ |
| not modelled | 15.8 | 8 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like
72 | d2toda1 |
| not modelled | 15.6 | 33 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like
73 | d2je6i1 |
| not modelled | 15.1 | 19 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
74 | c2btvB_ |
| not modelled | 14.7 | 26 | PDB header:virus Chain: B: PDB Molecule:protein (vp3 core protein); PDBTitle: atomic model for bluetongue virus (btv) core
75 | d1y4oa1 |
| not modelled | 14.3 | 19 | Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain
76 | d2ot2a1 |
| not modelled | 13.7 | 20 | Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like
77 | d1sroa_ |
| not modelled | 13.7 | 12 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
78 | c1s1iU_ |
| not modelled | 13.4 | 18 | PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
79 | d1bbua1 |
| not modelled | 13.3 | 22 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain
80 | d1ws8a_ |
| not modelled | 12.6 | 21 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like
81 | d1e1oa1 |
| not modelled | 12.3 | 19 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain
82 | d1e32a3 |
| not modelled | 12.2 | 21 | Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like
83 | d2g50a1 |
| not modelled | 12.1 | 14 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
84 | d3d3ra1 |
| not modelled | 12.1 | 25 | Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like
85 | d1r4va_ |
| not modelled | 11.8 | 23 | Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein
86 | d1g7sa1 |
| not modelled | 11.7 | 26 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
87 | c2qlwA_ |
| not modelled | 11.6 | 21 | PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum
88 | c2qlxA_ |
| not modelled | 11.6 | 21 | PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose
89 | d1wwia1 |
| not modelled | 11.5 | 14 | Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein
90 | d1ubea2 |
| not modelled | 11.5 | 7 | Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain
91 | c2gutA_ |
| not modelled | 11.5 | 23 | PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105
92 | d1mo6a2 |
| not modelled | 11.5 | 7 | Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain
93 | c3d3rA_ |
| not modelled | 11.4 | 25 | PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
94 | d1d7ka1 |
| not modelled | 11.2 | 33 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like
95 | c3g7gG_ |
| not modelled | 11.1 | 18 | PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0311 protein ca_c3321; PDBTitle: crystal structure of the protein with unknown function from2 clostridium acetobutylicum atcc 824
96 | d1g7sa2 |
| not modelled | 11.1 | 19 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
97 | d1e0ta1 |
| not modelled | 11.1 | 21 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
98 | d1jera_ |
| not modelled | 11.0 | 29 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like
99 | c1jerA_ |
| not modelled | 11.0 | 29 | PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0