Phyre 2 alignment of P0AAT4 with c1s1iU_

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Job Description | P0AAT4
Confidence | 13.42% | Date | Thu Jan 5 11:13:46 GMT 2012
Rank | 78 | Aligned Residues | 22
% Identity | 18% | Template | c1s1iU_
PDB info | PDB header:ribosome | Chain: U: PDB Molecule:60s ribosomal protein l26-a; | PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
Resolution | 11.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 201 | . | . | . | . | . | . | . | . | 210 |  |  |  | . | . | . | . | . | . | . | . | . | 220 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | L | K | L | G | D | W | L | E | M | . | . | . | P | K | Y | G | A | D | G | A | V | I | D | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | I | R | R | D | D | E | V | L | V | V | R | G | S | K | K | G | Q | E | G | K | I | S | S | V
Template Known Secondary structure |  |  |  |  | S | S | B |  |  | B |  |  | S | S | S | S |  | S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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