Phyre 2 alignment of P0AAT4 with d2cqaa1

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Job Description | P0AAT4
Confidence | 38.84% | Date | Thu Jan 5 11:13:46 GMT 2012
Rank | 32 | Aligned Residues | 25
% Identity | 28% | Template | d2cqaa1
SCOP info | OB-fold | Nucleic acid-binding proteins | TIP49 domain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 197 | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | A | N | D | M | L | K | L | G | D | W | L | E | M | P | K | Y | G | A | D | G | A | V | I | D | I | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Template Sequence |  | L | T | K | D | K | V | Q | A | G | D | V | I | T | I | D | K | A | . | . | T | G | K | I | S | K | L | G
Template Known Secondary structure |  |  |  |  | T | T |  |  | T | T | S |  |  |  |  |  | T | T | . | . | T | T |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |  |  | . | . | . | . | . | 80 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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