Phyre 2 alignment of P0AAT4 with c3pifD_

Return to main results | Retrieve Phyre Job Id

Job Description | P0AAT4
Confidence | 10.87% | Date | Thu Jan 5 11:13:46 GMT 2012
Rank | 100 | Aligned Residues | 28
% Identity | 25% | Template | c3pifD_
PDB info | PDB header:hydrolase | Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); | PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese
Resolution | 2.92 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | L | S | A | N | D | M | L | K | L | G | D | W | L | E | . | . | . | . | . | . | . | M | P | K | Y | G | A | D | G | A | V | I | D | I | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | L | L | R | S | Q | R | F | H | L | G | D | R | V | M | Y | I | Q | D | S | G | K | V | P | . | L | H | S | K | G | T | V | V | G | Y | T
Template Known Secondary structure |  |  |  |  |  | T | S |  |  |  | T | T |  |  |  |  |  |  |  | S | S | S | S | S |  | . | T | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1157 | . | . | 1160 | . | . | . | . | . | . | . | . | . | 1170 | . | . | . | . | . | . | . | . | . | 1180 |  | . | . | . | . | . | . | . | . | . | 1190 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions