Phyre 2 alignment of P0AAT4 with c2e6zA_

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Job Description | P0AAT4
Confidence | 74.58% | Date | Thu Jan 5 11:13:46 GMT 2012
Rank | 10 | Aligned Residues | 46
% Identity | 13% | Template | c2e6zA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:transcription elongation factor spt5; | PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 199 | 200 | . | . | . | . | . | . | . | . | . | 210 |  |  |  | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . |  |  |  | . | . | . | . | 240 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | N | D | M | L | K | L | G | D | W | L | E | M | . | . | . | P | K | Y | G | A | D | G | A | V | I | D | I | G | L | T | T | V | K | V | R | N | W | D | N | T | . | . | . | I | T | T | I | P | T | W | S | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | S | G | F | Q | P | G | D | N | V | E | V | C | E | G | E | L | I | N | L | Q | G | K | I | L | S | V | D | G | N | K | I | T | I | M | P | K | H | E | D | L | K | D | M | L | E | F | P | A | Q | E | L
Template Known Secondary structure |  |  | S | S |  |  | T | T | S |  |  |  |  |  | S | S | T | T | T | T |  |  |  |  |  |  |  |  | B | T | T |  |  |  |  |  |  |  |  | S | S |  |  | S |  |  |  |  |  | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 417 | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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