Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Y	E	L	L	T	T	E	N	A	P	V	K	M	W	T	K	G	V	P	V	E	A	D	A	R	Q	Q	L	I	N	T	A	K	M	P	F	I	F	K	H	I	A	V	M	P	D	V	H	L	G	K	G	S	T	I	G	S	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	P	T	K	G	A	I	I	P	A	A	V	G	V	D	I	G	C	G	M	N	A	L	R	T	A	L	T	A	E	D	L	P	E	N	L	A	E	L	R	Q	A	I	E	T	A	V	P	H	G	R	T	T	G	R	C	K	R	D	K
Secondary structure
SS confidence
Disorder																																																						?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	A	W	E	N	P	P	V	N	V	D	A	K	W	A	E	L	E	A	G	Y	Q	W	L	T	Q	K	Y	P	R	F	L	N	T	N	N	Y	K	H	L	G	T	L	G	T	G	N	H	F	I	E	I	C	L	D	E	S	D	Q	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?				?																			?							?	?				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		W	I	M	L	H	S	G	S	R	G	I	G	N	A	I	G	T	Y	F	I	D	L	A	Q	K	E	M	Q	E	T	L	E	T	L	P	S	R	D	L	A	Y	F	M	E	G	T	E	Y	F	D	D	Y	L	K	A	V	A	W	A	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	F	A	S	L	N	R	D	A	M	M	E	N	V	V	T	A	L	Q	S	I	T	Q	K	T	V	R	Q	P	Q	T	L	A	M	E	E	I	N	C	H	H	N	Y	V	Q	K	E	Q	H	F	G	E	E	I	Y	V	T	R	K	G
Secondary structure
SS confidence
Disorder																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	V	S	A	R	A	G	Q	Y	G	I	I	P	G	S	M	G	A	K	S	F	I	V	R	G	L	G	N	E	E	S	F	C	S	C	S	H	G	A	G	R	V	M	S	R	T	K	A	K	K	L	F	S	V	E	D	Q	I	R	A
Secondary structure
SS confidence
Disorder																																																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Sequence		T	A	H	V	E	C	R	K	D	A	E	V	I	D	E	I	P	M	A	Y	K	D	I	D	A	V	M	A	A	Q	S	D	L	V	E	V	I	Y	T	L	R	Q	V	V	C	V	K	G
Secondary structure
SS confidence
Disorder																																																?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1uc2 chain A Region: 2 - 408 Aligned: 406 Modelled: 407 Confidence: 100.0% Identity: 29% Fold: Hypothetical protein PH1602 Superfamily: Hypothetical protein PH1602 Family: Hypothetical protein PH1602 Phyre2 PDB 2epg chain B Region: 3 - 408 Aligned: 380 Modelled: 383 Confidence: 100.0% Identity: 31% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ttha1785; PDBTitle: crystal structure of ttha1785 Phyre2 PDB 1el6 chain A Region: 17 - 73 Aligned: 54 Modelled: 57 Confidence: 56.3% Identity: 26% Fold: Baseplate structural protein gp11 Superfamily: Baseplate structural protein gp11 Family: Baseplate structural protein gp11 Phyre2 PDB 1xmt chain A Region: 163 - 205 Aligned: 43 Modelled: 43 Confidence: 52.7% Identity: 19% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 PDB 2pd4 chain A domain 1 Region: 177 - 201 Aligned: 25 Modelled: 25 Confidence: 47.7% Identity: 8% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 2btw chain A Region: 157 - 183 Aligned: 26 Modelled: 27 Confidence: 43.5% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:alr0975 protein; PDBTitle: crystal structure of alr0975 Phyre2 PDB 1fxk chain C Region: 55 - 105 Aligned: 51 Modelled: 51 Confidence: 35.0% Identity: 16% Fold: Long alpha-hairpin Superfamily: Prefoldin Family: Prefoldin Phyre2 PDB 3emk chain A Region: 177 - 201 Aligned: 23 Modelled: 25 Confidence: 34.4% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis Phyre2 PDB 1hxh chain A Region: 177 - 201 Aligned: 23 Modelled: 25 Confidence: 31.9% Identity: 22% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 2bu3 chain A domain 1 Region: 157 - 183 Aligned: 26 Modelled: 27 Confidence: 29.4% Identity: 19% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Phytochelatin synthase Phyre2 PDB 3grk chain E Region: 177 - 201 Aligned: 25 Modelled: 25 Confidence: 27.4% Identity: 16% PDB header:oxidoreductase Chain: E: PDB Molecule:enoyl-(acyl-carrier-protein) reductase (nadh); PDBTitle: crystal structure of short chain dehydrogenase reductase2 sdr glucose-ribitol dehydrogenase from brucella melitensis Phyre2 PDB 2jjy chain D Region: 177 - 201 Aligned: 25 Modelled: 25 Confidence: 26.7% Identity: 8% PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-[acyl-carrier-protein] reductase; PDBTitle: crystal structure of francisella tularensis enoyl reductase2 (ftfabi) with bound nad Phyre2 PDB 2zdi chain C Region: 55 - 105 Aligned: 51 Modelled: 51 Confidence: 25.6% Identity: 27% PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 Phyre2 PDB 3ek2 chain D Region: 177 - 201 Aligned: 25 Modelled: 25 Confidence: 25.4% Identity: 12% PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-(acyl-carrier-protein) reductase (nadh); PDBTitle: crystal structure of eonyl-(acyl carrier protein) reductase2 from burkholderia pseudomallei 1719b Phyre2 PDB 2c4r chain L Region: 333 - 344 Aligned: 12 Modelled: 12 Confidence: 24.9% Identity: 33% PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e Phyre2 PDB 2h7m chain A domain 1 Region: 177 - 201 Aligned: 25 Modelled: 25 Confidence: 24.5% Identity: 8% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 2bpb chain B Region: 330 - 361 Aligned: 32 Modelled: 32 Confidence: 20.5% Identity: 9% PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella Phyre2 PDB 2o2s chain A Region: 177 - 201 Aligned: 25 Modelled: 25 Confidence: 20.4% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: the structure of t. gondii enoyl acyl carrier protein reductase in2 complex with nad and triclosan Phyre2 PDB 1jmx chain A domain 1 Region: 330 - 347 Aligned: 18 Modelled: 18 Confidence: 20.1% Identity: 11% Fold: Cytochrome c Superfamily: Cytochrome c Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Phyre2 PDB 2quo chain A Region: 162 - 192 Aligned: 30 Modelled: 31 Confidence: 19.6% Identity: 33% PDB header:toxin Chain: A: PDB Molecule:heat-labile enterotoxin b chain; PDBTitle: crystal structure of c terminal fragment of clostridium2 perfringens enterotoxin Phyre2 1 d1uc2a_ 2 c2epgB_ 3 d1el6a_ 4 d1xmta_ 5 d2pd4a1 6 c2btwA_ 7 d1fxkc_ 8 c3emkA_ 9 d1hxha_ 10 d2bu3a1 11 c3grkE_ 12 c2jjyD_ 13 c2zdiC_ 14 c3ek2D_ 15 c2c4rL_ 16 d2h7ma1 17 c2bpbB_ 18 c2o2sA_ 19 d1jmxa1 20 c2quoA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1uc2a_ 100.0 29 Fold:Hypothetical protein PH1602 Superfamily:Hypothetical protein PH1602 Family:Hypothetical protein PH1602 2 c2epgB_ 100.0 31 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ttha1785; PDBTitle: crystal structure of ttha1785 3 d1el6a_ 56.3 26 Fold:Baseplate structural protein gp11 Superfamily:Baseplate structural protein gp11 Family:Baseplate structural protein gp11 4 d1xmta_ 52.7 19 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 5 d2pd4a1 47.7 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 6 c2btwA_ 43.5 19 PDB header:transferase Chain: A: PDB Molecule:alr0975 protein; PDBTitle: crystal structure of alr0975 7 d1fxkc_ 35.0 16 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 8 c3emkA_ 34.4 22 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis 9 d1hxha_ 31.9 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 10 d2bu3a1 29.4 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Phytochelatin synthase 11 c3grkE_ 27.4 16 PDB header:oxidoreductase Chain: E: PDB Molecule:enoyl-(acyl-carrier-protein) reductase (nadh); PDBTitle: crystal structure of short chain dehydrogenase reductase2 sdr glucose-ribitol dehydrogenase from brucella melitensis 12 c2jjyD_ 26.7 8 PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-[acyl-carrier-protein] reductase; PDBTitle: crystal structure of francisella tularensis enoyl reductase2 (ftfabi) with bound nad 13 c2zdiC_ 25.6 27 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 14 c3ek2D_ 25.4 12 PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-(acyl-carrier-protein) reductase (nadh); PDBTitle: crystal structure of eonyl-(acyl carrier protein) reductase2 from burkholderia pseudomallei 1719b 15 c2c4rL_ 24.9 33 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 16 d2h7ma1 24.5 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 17 c2bpbB_ 20.5 9 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 18 c2o2sA_ 20.4 24 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: the structure of t. gondii enoyl acyl carrier protein reductase in2 complex with nad and triclosan 19 d1jmxa1 20.1 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 20 c2quoA_ 19.6 33 PDB header:toxin Chain: A: PDB Molecule:heat-labile enterotoxin b chain; PDBTitle: crystal structure of c terminal fragment of clostridium2 perfringens enterotoxin 21 d1pbya1 not modelled 19.5 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 22 d1w96a2 not modelled 19.5 43 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 23 d2j9ga2 not modelled 18.9 27 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 24 c1jmuE_ not modelled 18.6 67 PDB header:viral protein Chain: E: PDB Molecule:protein mu-1; PDBTitle: crystal structure of the reovirus mu1/sigma3 complex 25 d1ulza2 not modelled 18.4 43 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 26 d1kx7a_ not modelled 17.9 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 27 c2ptgA_ not modelled 17.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: crystal structure of eimeria tenella enoyl reductase 28 d1uoua3 not modelled 17.7 7 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 29 c2ig6B_ not modelled 17.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nimc/nima family protein; PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution 30 c1w4zA_ not modelled 17.0 20 PDB header:antibiotic biosynthesis Chain: A: PDB Molecule:ketoacyl reductase; PDBTitle: structure of actinorhodin polyketide (actiii) reductase 31 c3gdfA_ not modelled 16.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase; PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum. 32 c2nq8B_ not modelled 16.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: malarial enoyl acyl acp reductase bound with inh-nad adduct 33 c2foiB_ not modelled 16.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: synthesis, biological activity, and x-ray crystal structural analysis2 of diaryl ether inhibitors of malarial enoyl acp reductase. 34 c3svtA_ not modelled 16.4 21 PDB header:oxidoreductase Chain: A: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: structure of a short-chain type dehydrogenase/reductase from2 mycobacterium ulcerans 35 d1xq1a_ not modelled 15.8 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 36 d1wkqa_ not modelled 15.8 41 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 37 c3cu4A_ not modelled 15.7 27 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 38 d2rhca1 not modelled 15.7 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 39 d1r0ua_ not modelled 15.3 24 Fold:Lipocalins Superfamily:Lipocalins Family:Hypothetical protein YwiB 40 d1ulua_ not modelled 15.1 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 41 d1h5qa_ not modelled 14.2 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 42 d1uh5a_ not modelled 13.1 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 43 d2ag5a1 not modelled 13.0 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 44 c3giwA_ not modelled 12.9 18 PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function duf574; PDBTitle: crystal structure of a duf574 family protein (sav_2177) from2 streptomyces avermitilis ma-4680 at 1.45 a resolution 45 c3db0B_ not modelled 12.8 10 PDB header:oxidoreductase Chain: B: PDB Molecule:lin2891 protein; PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution 46 c2d0sA_ not modelled 12.6 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 47 c2v07A_ not modelled 12.3 27 PDB header:photosynthesis Chain: A: PDB Molecule:cytochrome c6; PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant 48 c3gr6A_ not modelled 12.3 8 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh]; PDBTitle: crystal structure of the staphylococcus aureus enoyl-acyl2 carrier protein reductase (fabi) in complex with nadp and3 triclosan 49 c3ku1E_ not modelled 12.0 40 PDB header:transferase Chain: E: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine 50 d2tpta3 not modelled 11.6 3 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 51 c2p91A_ not modelled 11.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh]; PDBTitle: crystal structure of enoyl-[acyl-carrier-protein] reductase (nadh)2 from aquifex aeolicus vf5 52 d1cc5a_ not modelled 11.4 36 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 53 d1qsga_ not modelled 11.2 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 54 c3ckkA_ not modelled 10.8 100 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: crystal structure of human methyltransferase-like protein 1 55 d1mz4a_ not modelled 10.7 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 56 c3qivA_ not modelled 10.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:short-chain dehydrogenase or 3-oxoacyl-[acyl-carrier- PDBTitle: crystal structure of a putative short-chain dehydrogenase or 3-2 oxoacyl-[acyl-carrier-protein] reductase from mycobacterium3 paratuberculosis atcc baa-968 / k-10 57 d1fcdc1 not modelled 10.5 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 58 d1tt2a_ not modelled 10.4 10 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 59 d1cyja_ not modelled 10.4 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 60 d1brwa3 not modelled 10.4 13 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 61 c3g5tA_ not modelled 10.4 80 PDB header:transferase Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase; PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast 62 d1wvec1 not modelled 10.4 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 63 d2fd5a2 not modelled 10.3 20 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 64 c2bh1Y_ not modelled 10.1 23 PDB header:transport protein Chain: Y: PDB Molecule:general secretion pathway protein e,; PDBTitle: x-ray structure of the general secretion pathway complex of2 the n-terminal domain of epse and the cytosolic domain of3 epsl of vibrio cholerae 65 d2bh1x1 not modelled 10.1 23 Fold:Alpha-lytic protease prodomain-like Superfamily:EspE N-terminal domain-like Family:GSPII protein E N-terminal domain-like 66 c3dliB_ not modelled 10.0 100 PDB header:transferase Chain: B: PDB Molecule:methyltransferase; PDBTitle: crystal structure of a sam dependent methyltransferase from2 archaeoglobus fulgidus 67 c3bkwB_ not modelled 9.8 80 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine dependent methyltransferase; PDBTitle: crystal structure of s-adenosylmethionine dependent methyltransferase2 (np_104914.1) from mesorhizobium loti at 1.60 a resolution 68 c1j6qA_ not modelled 9.7 26 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme 69 d1j6qa_ not modelled 9.7 26 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 70 c3lf2B_ not modelled 9.6 33 PDB header:oxidoreductase Chain: B: PDB Molecule:short chain oxidoreductase q9hya2; PDBTitle: nadph bound structure of the short chain oxidoreductase q9hya2 from2 pseudomonas aeruginosa pao1 containing an atypical catalytic center 71 d1ja9a_ not modelled 9.5 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 72 c3fzgA_ not modelled 9.4 80 PDB header:transferase Chain: A: PDB Molecule:16s rrna methylase; PDBTitle: structure of the 16s rrna methylase arma 73 c3dlcA_ not modelled 9.4 80 PDB header:transferase Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution 74 d1vz6a_ not modelled 9.4 12 Fold:DmpA/ArgJ-like Superfamily:DmpA/ArgJ-like Family:ArgJ-like 75 d2h00a1 not modelled 9.2 45 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Methyltransferase 10 domain 76 d1xxla_ not modelled 9.2 80 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:UbiE/COQ5-like 77 c2p35A_ not modelled 9.1 80 PDB header:transferase Chain: A: PDB Molecule:trans-aconitate 2-methyltransferase; PDBTitle: crystal structure of trans-aconitate methyltransferase from2 agrobacterium tumefaciens 78 c2qioA_ not modelled 9.0 9 PDB header:unknown function Chain: A: PDB Molecule:enoyl-(acyl-carrier-protein) reductase; PDBTitle: x-ray structure of enoyl-acyl carrier protein reductase from bacillus2 anthracis with triclosan 79 c2p8jA_ not modelled 9.0 60 PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine-dependent methyltransferase; PDBTitle: crystal structure of s-adenosylmethionine-dependent methyltransferase2 (np_349143.1) from clostridium acetobutylicum at 2.00 a resolution 80 c3dxyA_ not modelled 9.0 60 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: crystal structure of ectrmb in complex with sam 81 d2avna1 not modelled 9.0 60 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:UbiE/COQ5-like 82 c3i9fB_ not modelled 9.0 80 PDB header:transferase Chain: B: PDB Molecule:putative type 11 methyltransferase; PDBTitle: crystal structure of a putative type 11 methyltransferase2 from sulfolobus solfataricus 83 c3l8dA_ not modelled 9.0 80 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: crystal structure of methyltransferase from bacillus2 thuringiensis 84 c3k31B_ not modelled 8.9 4 PDB header:oxidoreductase Chain: B: PDB Molecule:enoyl-(acyl-carrier-protein) reductase; PDBTitle: crystal structure of eonyl-(acyl-carrier-protein) reductase from2 anaplasma phagocytophilum in complex with nad at 1.9a resolution 85 c3d2lC_ not modelled 8.8 100 PDB header:transferase Chain: C: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of sam-dependent methyltransferase (zp_00538691.1)2 from exiguobacterium sp. 255-15 at 1.90 a resolution 86 d1wfwa_ not modelled 8.7 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 87 c2hxgB_ not modelled 8.7 24 PDB header:isomerase Chain: B: PDB Molecule:l-arabinose isomerase; PDBTitle: crystal structure of mn2+ bound ecai 88 c3merA_ not modelled 8.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:slr1183 protein; PDBTitle: crystal structure of the methyltransferase slr1183 from2 synechocystis sp. pcc 6803, northeast structural genomics3 consortium target sgr145 89 c3opnA_ not modelled 8.7 60 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hemolysin; PDBTitle: the crystal structure of a putative hemolysin from lactococcus lactis 90 d2fk8a1 not modelled 8.6 100 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 91 d1kpga_ not modelled 8.6 80 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 92 c2fk8A_ not modelled 8.6 100 PDB header:transferase Chain: A: PDB Molecule:methoxy mycolic acid synthase 4; PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine 93 d1ctja_ not modelled 8.6 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 94 c2x5sB_ not modelled 8.5 11 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 95 c3egeA_ not modelled 8.5 80 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase from antibiotic biosynthesis PDBTitle: crystal structure of putative methyltransferase from antibiotic2 biosynthesis pathway (yp_324569.1) from anabaena variabilis atcc3 29413 at 2.40 a resolution 96 c3h2bB_ not modelled 8.4 60 PDB header:transferase Chain: B: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of the sam-dependent methyltransferase2 cg3271 from corynebacterium glutamicum in complex with s-3 adenosyl-l-homocysteine and pyrophosphate. northeast4 structural genomics consortium target cgr113a 97 c3g07C_ not modelled 8.3 60 PDB header:transferase Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme; PDBTitle: methyltransferase domain of human bicoid-interacting protein2 3 homolog (drosophila) 98 c3tl3A_ not modelled 8.3 23 PDB header:oxidoreductase Chain: A: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: structure of a short-chain type dehydrogenase/reductase from2 mycobacterium ulcerans 99 d2fcta1 not modelled 8.3 32 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0