09/01/2012 13:30:22 : INFO  : Run start: Mon Jan  9 13:30:22 GMT 2012
09/01/2012 13:30:25 : INFO  : Initialised job
09/01/2012 13:30:26 : INFO  : Renaming log file 'phyre2_20120109_133021.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c6e4a64e36197fd1/phyre_20120109_133021.log'
09/01/2012 13:30:26 : INFO  : Initialised job:
Sequence
>batch____
MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG

09/01/2012 13:30:27 : INFO  : Checked sequence
09/01/2012 13:30:28 : INFO  : Finding homologues with PSI-BLAST
09/01/2012 13:30:29 : INFO  : PSI-BLAST 3 iterations
09/01/2012 13:32:18 : INFO  : PSI-BLAST 5 iterations
09/01/2012 13:33:39 : INFO  : Finished PSI-BLAST
09/01/2012 13:33:40 : INFO  : Running Buildali to generate a3m file
09/01/2012 13:40:09 : INFO  : Converting to HMM
09/01/2012 13:40:13 : INFO  : Calibrating HMM
09/01/2012 13:40:25 : INFO  : Searching HMM database
09/01/2012 13:47:36 : INFO  : Finished buildali
09/01/2012 13:47:37 : INFO  : Predicting secondary structure
09/01/2012 13:47:41 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 13:47:42 : INFO  : Predicting Disordered regions
09/01/2012 13:47:44 : INFO  : Predicted Disorder (Disopred)
09/01/2012 13:47:45 : INFO  : Running memsat_svm check
09/01/2012 13:49:45 : INFO  : Globular protein
09/01/2012 13:49:45 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c6e4a64e36197fd1'
09/01/2012 13:49:46 : INFO  : Initialising fold library search
09/01/2012 13:49:47 : INFO  : Initialised search input
09/01/2012 13:49:48 : INFO  : Building Ensemble models
09/01/2012 13:49:49 : INFO  : Building hh.d1uc2a_.model.1.pdb
09/01/2012 13:49:55 : INFO  : Building hh.c2epgB_.model.2.pdb
09/01/2012 13:50:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c6e4a64e36197fd1/hh.c2epgB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c6e4a64e36197fd1/c2epgB_.2.pdb
09/01/2012 13:50:05 : INFO  : Building d1uc2a_.1.pdb
09/01/2012 13:50:11 : INFO  : Building c2epgB_.2.pdb
09/01/2012 13:50:16 : INFO  : Building d1el6a_.3.pdb
09/01/2012 13:50:22 : INFO  : Building d1xmta_.4.pdb
09/01/2012 13:50:27 : INFO  : Building d2pd4a1.5.pdb
09/01/2012 13:50:33 : INFO  : Building c2btwA_.6.pdb
09/01/2012 13:50:39 : INFO  : Building d1fxkc_.7.pdb
09/01/2012 13:50:44 : INFO  : Building c3emkA_.8.pdb
09/01/2012 13:50:50 : INFO  : Building d1hxha_.9.pdb
09/01/2012 13:50:55 : INFO  : Building d2bu3a1.10.pdb
09/01/2012 13:51:00 : INFO  : Building c3grkE_.11.pdb
09/01/2012 13:51:06 : INFO  : Building c2jjyD_.12.pdb
09/01/2012 13:51:12 : INFO  : Building c2zdiC_.13.pdb
09/01/2012 13:51:17 : INFO  : Building c3ek2D_.14.pdb
09/01/2012 13:51:23 : INFO  : Building c2c4rL_.15.pdb
09/01/2012 13:51:29 : INFO  : Building d2h7ma1.16.pdb
09/01/2012 13:51:35 : INFO  : Building c2bpbB_.17.pdb
09/01/2012 13:51:40 : INFO  : Building c2o2sA_.18.pdb
09/01/2012 13:51:46 : INFO  : Building d1jmxa1.19.pdb
09/01/2012 13:51:51 : INFO  : Building c2quoA_.20.pdb
09/01/2012 13:52:13 : INFO  : Finished HH model building
09/01/2012 13:52:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 13:52:55 : INFO  : html domain output complete ID 'c6e4a64e36197fd1'
09/01/2012 14:32:26 : INFO  : Run end  : Mon Jan  9 14:32:25 GMT 2012
