Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	L	Q	I	A	V	G	I	I	R	N	E	N	N	E	I	F	I	T	R	R	A	A	D	A	H	M	A	N	K	L	E	F	P	G	G	K	I	E	M	G	E	T	P	E	Q	A	V	V	R	E	L	Q	E	E	V	G	I
Secondary structure
SS confidence
Disorder		?	?	?	?																							?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	P	Q	H	F	S	L	F	E	K	L	E	Y	E	F	P	D	R	H	I	T	L	W	F	W	L	V	E	R	W	E	G	E	P	W	G	K	E	G	Q	P	G	E	W	M	S	L	V	G	L	N	A	D	D	F	P	P	A	N	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		P	V	I	A	K	L	K	R	L
Secondary structure
SS confidence
Disorder									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pun chain A Region: 1 - 129 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 100% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3gwy chain A Region: 1 - 128 Aligned: 120 Modelled: 128 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis Phyre2 PDB 3ef5 chain A Region: 7 - 128 Aligned: 122 Modelled: 122 Confidence: 99.9% Identity: 34% PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp Phyre2 PDB 3hhj chain A Region: 2 - 127 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae Phyre2 PDB 3r03 chain B Region: 1 - 128 Aligned: 123 Modelled: 128 Confidence: 99.9% Identity: 29% PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum Phyre2 PDB 1iry chain A Region: 1 - 126 Aligned: 125 Modelled: 126 Confidence: 99.9% Identity: 21% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3grn chain B Region: 1 - 128 Aligned: 128 Modelled: 128 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 PDB 1rrq chain A domain 2 Region: 1 - 128 Aligned: 120 Modelled: 128 Confidence: 99.9% Identity: 21% Fold: Nudix Superfamily: Nudix Family: MutY C-terminal domain-like Phyre2 PDB 3exq chain A Region: 2 - 129 Aligned: 128 Modelled: 128 Confidence: 99.9% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis Phyre2 PDB 1rrq chain A Region: 2 - 128 Aligned: 119 Modelled: 127 Confidence: 99.9% Identity: 21% PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair Phyre2 PDB 3n77 chain B Region: 1 - 125 Aligned: 124 Modelled: 125 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 Phyre2 PDB 3cng chain C Region: 1 - 128 Aligned: 125 Modelled: 128 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 2pq1 chain B Region: 1 - 129 Aligned: 123 Modelled: 129 Confidence: 99.9% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 2b06 chain A domain 1 Region: 1 - 128 Aligned: 123 Modelled: 128 Confidence: 99.9% Identity: 18% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1vk6 chain A domain 2 Region: 3 - 126 Aligned: 122 Modelled: 124 Confidence: 99.9% Identity: 20% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 3o8s chain A Region: 3 - 126 Aligned: 119 Modelled: 124 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution Phyre2 PDB 3fk9 chain B Region: 4 - 128 Aligned: 121 Modelled: 125 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans Phyre2 PDB 2b0v chain A domain 1 Region: 3 - 128 Aligned: 125 Modelled: 125 Confidence: 99.9% Identity: 18% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2gb5 chain B Region: 2 - 126 Aligned: 123 Modelled: 125 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 1vcd chain A domain 1 Region: 4 - 128 Aligned: 120 Modelled: 125 Confidence: 99.9% Identity: 25% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 1 d1puna_ 2 c3gwyA_ 3 c3ef5A_ 4 c3hhjA_ 5 c3r03B_ 6 d1irya_ 7 c3grnB_ 8 d1rrqa2 9 c3exqA_ 10 c1rrqA_ 11 c3n77B_ 12 c3cngC_ 13 c2pq1B_ 14 d2b06a1 15 d1vk6a2 16 c3o8sA_ 17 c3fk9B_ 18 d2b0va1 19 c2gb5B_ 20 d1vcda1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1puna_ 100.0 100 Fold:Nudix Superfamily:Nudix Family:MutT-like 2 c3gwyA_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 3 c3ef5A_ 99.9 34 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 4 c3hhjA_ 99.9 29 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 5 c3r03B_ 99.9 29 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 6 d1irya_ 99.9 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 7 c3grnB_ 99.9 24 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 8 d1rrqa2 99.9 21 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 9 c3exqA_ 99.9 13 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 10 c1rrqA_ 99.9 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 11 c3n77B_ 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 12 c3cngC_ 99.9 18 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 13 c2pq1B_ 99.9 26 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 14 d2b06a1 99.9 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 15 d1vk6a2 99.9 20 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 16 c3o8sA_ 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 17 c3fk9B_ 99.9 21 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 18 d2b0va1 99.9 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 19 c2gb5B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 20 d1vcda1 99.9 25 Fold:Nudix Superfamily:Nudix Family:MutT-like 21 c3dkuB_ not modelled 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 22 c3q4iA_ not modelled 99.9 21 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 23 c3gg6A_ not modelled 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 24 c2qjoB_ not modelled 99.9 22 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 25 c3h95A_ not modelled 99.9 23 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 26 d1x51a1 not modelled 99.9 13 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 27 c3gz8C_ not modelled 99.9 14 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 28 d2fkba1 not modelled 99.9 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 29 d2fb1a2 not modelled 99.9 14 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 30 d1k2ea_ not modelled 99.9 25 Fold:Nudix Superfamily:Nudix Family:MutT-like 31 c2kdvA_ not modelled 99.9 24 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 32 c2jvbA_ not modelled 99.9 20 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 33 c2yyhC_ not modelled 99.8 22 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 34 c2o1cB_ not modelled 99.8 22 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 35 c3i9xA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 36 d1sjya_ not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 37 c3rh7A_ not modelled 99.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 38 c2r5wA_ not modelled 99.8 23 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 39 d2azwa1 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 40 c3gz6A_ not modelled 99.8 14 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 41 d1ryaa_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 42 c2pqvA_ not modelled 99.8 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 43 c2fvvA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 44 d2fvva1 not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 45 c3fjyB_ not modelled 99.8 25 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 46 d1ktga_ not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 47 c2fb1A_ not modelled 99.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 48 c3id9B_ not modelled 99.8 22 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 49 c2qkmF_ not modelled 99.8 19 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 50 d1xsba_ not modelled 99.8 25 Fold:Nudix Superfamily:Nudix Family:MutT-like 51 d2a6ta2 not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 52 c3edsA_ not modelled 99.8 28 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 53 c3f6aA_ not modelled 99.8 26 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 54 d1vhza_ not modelled 99.8 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 55 c3fcmA_ not modelled 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 56 c3sonB_ not modelled 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 57 d1nqza_ not modelled 99.8 28 Fold:Nudix Superfamily:Nudix Family:MutT-like 58 c2w4eA_ not modelled 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 59 d2fmla2 not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 60 d1ppva_ not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 61 d1hzta_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 62 c2yvoA_ not modelled 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 63 d1jkna_ not modelled 99.8 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 64 d1v8ya_ not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 65 c3f13A_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 66 c3e57A_ not modelled 99.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 67 d1g0sa_ not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 68 c3bm4B_ not modelled 99.7 25 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 69 c2fmlB_ not modelled 99.7 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 70 d1mqea_ not modelled 99.7 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 71 d2o5fa1 not modelled 99.7 24 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 72 c2i6kA_ not modelled 99.7 19 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 73 d1viua_ not modelled 99.6 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 74 c3q91D_ not modelled 99.6 16 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 75 c2pnyA_ not modelled 99.6 18 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 76 d1q33a_ not modelled 99.6 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 77 c3qsjA_ not modelled 99.5 24 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 78 c3dupB_ not modelled 99.4 15 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 79 c2j8qB_ not modelled 99.4 17 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 80 d1u20a1 not modelled 99.4 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 81 c3couA_ not modelled 98.8 22 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 98.0 15 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 96.7 17 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 d2dexx3 not modelled 10.5 23 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain 85 c2vldA_ not modelled 9.5 19 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 86 d1tnsa_ not modelled 8.1 28 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 87 d1nc7a_ not modelled 6.9 33 Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070 88 c1zwvA_ not modelled 6.8 29 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 89 d2nn6d2 not modelled 6.8 15 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 90 c1kveB_ not modelled 5.7 23 PDB header:toxin Chain: B: PDB Molecule:smk toxin; PDBTitle: killer toxin from halotolerant yeast 91 c2dexX_ not modelled 5.5 23 PDB header:hydrolase Chain: X: PDB Molecule:protein-arginine deiminase type iv; PDBTitle: crystal structure of human peptidylarginine deiminase 4 in complex2 with histone h3 n-terminal peptide including arg17

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0