Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Q	Q	L	S	W	R	T	I	V	G	Y	S	L	G	D	V	A	N	N	F	A	F	A	M	G	A	L	F	L	L	S	Y	Y	T	D	V	A	G	V	G	A	A	A	A	G	T	M	L	L	L	V	R	V	F	D	A	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	V	F	A	G	R	V	V	D	S	V	N	T	R	W	G	K	F	R	P	F	L	L	F	G	T	A	P	L	M	I	F	S	V	L	V	F	W	V	L	T	D	W	S	H	G	S	K	V	V	Y	A	Y	L	T	Y	M	G	L	G
Secondary structure
SS confidence
Disorder																																										?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	C	Y	S	L	V	N	I	P	Y	G	S	L	A	T	A	M	T	Q	Q	P	Q	S	R	A	R	L	G	A	A	R	G	I	A	A	S	L	T	F	V	C	L	A	F	L	I	G	P	S	I	K	N	S	S	P	E	E	M	V	S
Secondary structure
SS confidence
Disorder																				?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	Y	H	F	W	T	I	V	L	A	I	A	G	M	V	L	Y	F	I	C	F	K	S	T	R	E	N	V	V	R	I	V	A	Q	P	S	L	N	I	S	L	Q	T	L	K	R	N	R	P	L	F	M	L	C	I	G	A	L	C	V
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	I	S	T	F	A	V	S	A	S	S	L	F	Y	V	R	Y	V	L	N	D	T	G	L	F	T	V	L	V	L	V	Q	N	L	V	G	T	V	A	S	A	P	L	V	P	G	M	V	A	R	I	G	K	K	N	T	F	L	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	L	L	G	T	C	G	Y	L	L	F	F	W	V	S	V	W	S	L	P	V	A	L	V	A	L	A	I	A	S	I	G	Q	G	V	T	M	T	V	M	W	A	L	E	A	D	T	V	E	Y	G	E	Y	L	T	G	V	R	I	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	L	T	Y	S	L	F	S	F	T	R	K	C	G	Q	A	I	G	G	S	I	P	A	F	I	L	G	L	S	G	Y	I	A	N	Q	V	Q	T	P	E	V	I	M	G	I	R	T	S	I	A	L	V	P	C	G	F	M	L	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Sequence		F	V	I	I	W	F	Y	P	L	T	D	K	K	F	K	E	I	V	V	E	I	D	N	R	K	K	V	Q	Q	Q	L	I	S	D	I	T	N
Secondary structure
SS confidence
Disorder																											?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pv7 chain A Region: 3 - 444 Aligned: 414 Modelled: 427 Confidence: 99.9% Identity: 13% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 1pw4 chain A Region: 3 - 441 Aligned: 408 Modelled: 425 Confidence: 99.9% Identity: 13% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 2gfp chain A Region: 10 - 418 Aligned: 368 Modelled: 392 Confidence: 99.8% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Phyre2 PDB 3o7p chain A Region: 8 - 430 Aligned: 386 Modelled: 409 Confidence: 99.8% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Phyre2 PDB 2xut chain C Region: 13 - 419 Aligned: 389 Modelled: 402 Confidence: 99.7% Identity: 11% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Phyre2 PDB 3qnq chain D Region: 373 - 449 Aligned: 77 Modelled: 77 Confidence: 53.5% Identity: 14% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 2f23 chain A domain 1 Region: 427 - 455 Aligned: 29 Modelled: 29 Confidence: 52.7% Identity: 10% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 1grj chain A domain 1 Region: 427 - 455 Aligned: 29 Modelled: 29 Confidence: 36.1% Identity: 24% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 1by0 chain A Region: 431 - 455 Aligned: 25 Modelled: 25 Confidence: 28.0% Identity: 28% PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen Phyre2 PDB 1ji6 chain A domain 3 Region: 374 - 457 Aligned: 64 Modelled: 66 Confidence: 20.1% Identity: 14% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 1f6g chain A Region: 390 - 456 Aligned: 67 Modelled: 67 Confidence: 18.6% Identity: 13% Fold: Voltage-gated potassium channels Superfamily: Voltage-gated potassium channels Family: Voltage-gated potassium channels Phyre2 PDB 2q7c chain C Region: 433 - 455 Aligned: 23 Modelled: 23 Confidence: 18.2% Identity: 22% PDB header:viral protein Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and PDBTitle: crystal structure of iqn17 Phyre2 PDB 1m46 chain B Region: 434 - 450 Aligned: 17 Modelled: 16 Confidence: 15.6% Identity: 29% PDB header:cell cycle protein Chain: B: PDB Molecule:iq4 motif from myo2p, a class v myosin; PDBTitle: crystal structure of mlc1p bound to iq4 of myo2p, a class v2 myosin Phyre2 PDB 1xmp chain A Region: 435 - 454 Aligned: 20 Modelled: 20 Confidence: 15.6% Identity: 10% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 1zxa chain B Region: 435 - 455 Aligned: 21 Modelled: 21 Confidence: 13.8% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia Phyre2 PDB 2knc chain A Region: 393 - 440 Aligned: 48 Modelled: 48 Confidence: 12.6% Identity: 13% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2ce7 chain A domain 1 Region: 426 - 457 Aligned: 32 Modelled: 32 Confidence: 11.7% Identity: 13% Fold: FtsH protease domain-like Superfamily: FtsH protease domain-like Family: FtsH protease domain-like Phyre2 PDB 2oar chain A domain 1 Region: 416 - 456 Aligned: 34 Modelled: 41 Confidence: 11.1% Identity: 18% Fold: Gated mechanosensitive channel Superfamily: Gated mechanosensitive channel Family: Gated mechanosensitive channel Phyre2 PDB 1a92 chain B Region: 431 - 454 Aligned: 24 Modelled: 24 Confidence: 10.7% Identity: 29% PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen Phyre2 PDB 2oqq chain B Region: 433 - 457 Aligned: 25 Modelled: 25 Confidence: 10.2% Identity: 16% PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana Phyre2 1 d1pv7a_ 2 d1pw4a_ 3 c2gfpA_ 4 c3o7pA_ 5 c2xutC_ 6 c3qnqD_ 7 d2f23a1 8 d1grja1 9 c1by0A_ 10 d1ji6a3 11 d1f6ga_ 12 c2q7cC_ 13 c1m46B_ 14 d1xmpa_ 15 c1zxaB_ 16 c2kncA_ 17 d2ce7a1 18 d2oara1 19 c1a92B_ 20 c2oqqB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pv7a_ 99.9 13 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 2 d1pw4a_ 99.9 13 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 3 c2gfpA_ 99.8 14 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 4 c3o7pA_ 99.8 15 PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) 5 c2xutC_ 99.7 11 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 6 c3qnqD_ 53.5 14 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 7 d2f23a1 52.7 10 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 8 d1grja1 36.1 24 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 9 c1by0A_ 28.0 28 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 10 d1ji6a3 20.1 14 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 11 d1f6ga_ 18.6 13 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 12 c2q7cC_ 18.2 22 PDB header:viral protein Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and PDBTitle: crystal structure of iqn17 13 c1m46B_ 15.6 29 PDB header:cell cycle protein Chain: B: PDB Molecule:iq4 motif from myo2p, a class v myosin; PDBTitle: crystal structure of mlc1p bound to iq4 of myo2p, a class v2 myosin 14 d1xmpa_ 15.6 10 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 15 c1zxaB_ 13.8 19 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 16 c2kncA_ 12.6 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 17 d2ce7a1 11.7 13 Fold:FtsH protease domain-like Superfamily:FtsH protease domain-like Family:FtsH protease domain-like 18 d2oara1 11.1 18 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 19 c1a92B_ 10.7 29 PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen 20 c2oqqB_ 10.2 16 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 21 c3onoA_ not modelled 9.7 14 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 22 d1u69a_ not modelled 9.4 27 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase 23 c1ji6A_ not modelled 9.2 14 PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry3bb; PDBTitle: crystal structure of the insecticidal bacterial del2 endotoxin cry3bb1 bacillus thuringiensis 24 c3jqhA_ not modelled 9.1 24 PDB header:sugar binding protein Chain: A: PDB Molecule:c-type lectin domain family 4 member m; PDBTitle: structure of the neck region of the glycan-binding receptor2 dc-signr 25 d1ab4a_ not modelled 9.0 13 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 26 c2wl2B_ not modelled 8.8 13 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 27 c3eh0C_ not modelled 8.7 8 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 28 d1oqwa_ not modelled 8.6 13 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 29 d2pila_ not modelled 8.4 11 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 30 c2l5gA_ not modelled 8.4 13 PDB header:transcription regulator Chain: A: PDB Molecule:g protein pathway suppressor 2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 31 c2nuxB_ not modelled 8.4 35 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 32 c2hjmB_ not modelled 8.1 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 33 c2kwyA_ not modelled 7.9 19 PDB header:proton transport Chain: A: PDB Molecule:v-type proton atpase subunit g; PDBTitle: structure of g61-101 34 c1l4aE_ not modelled 7.8 12 PDB header:endocytosis/exocytosis Chain: E: PDB Molecule:synaphin a; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 35 c2jo8B_ not modelled 7.7 24 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 36 c2kmfA_ not modelled 7.7 20 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kda protein; PDBTitle: solution structure of psb27 from cyanobacterial photosystem2 ii 37 d2h8aa1 not modelled 7.7 7 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 38 c2novD_ not modelled 7.6 21 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target 39 c2w8aC_ not modelled 7.0 9 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 40 c3eb7B_ not modelled 6.9 18 PDB header:toxin Chain: B: PDB Molecule:insecticidal delta-endotoxin cry8ea1; PDBTitle: crystal structure of insecticidal delta-endotoxin cry8ea1 from2 bacillus thuringiensis at 2.2 angstroms resolution 41 c2y6xA_ not modelled 6.7 20 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kd protein; PDBTitle: structure of psb27 from thermosynechococcus elongatus 42 c2xzrA_ not modelled 6.7 16 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 43 d2cqea1 not modelled 6.7 11 Fold:CCCH zinc finger Superfamily:CCCH zinc finger Family:CCCH zinc finger 44 d1fx0a1 not modelled 6.7 11 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 45 d1ez4a2 not modelled 6.6 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 46 c1tjlD_ not modelled 6.5 0 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 47 c3c5yD_ not modelled 6.5 10 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 48 d1i9za_ not modelled 6.1 22 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 49 c1zvuA_ not modelled 6.0 18 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 50 c3qx3B_ not modelled 5.9 18 PDB header:isomerase/dna/isomerase inhibitor Chain: B: PDB Molecule:dna topoisomerase 2-beta; PDBTitle: human topoisomerase iibeta in complex with dna and etoposide 51 c2rpaA_ not modelled 5.9 24 PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme 52 c3ilwA_ not modelled 5.9 11 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain 53 d1h41a2 not modelled 5.8 19 Fold:Zincin-like Superfamily:beta-N-acetylhexosaminidase-like domain Family:alpha-D-glucuronidase, N-terminal domain 54 d1ciya3 not modelled 5.7 20 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 55 c2inrA_ not modelled 5.7 24 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 56 d2ba0d2 not modelled 5.6 15 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 57 c2c5iT_ not modelled 5.6 23 PDB header:protein transport Chain: T: PDB Molecule:t-snare affecting a late golgi compartment PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation 58 d2b5ua2 not modelled 5.5 17 Fold:Cloacin translocation domain Superfamily:Cloacin translocation domain Family:Cloacin translocation domain 59 d1k1xa1 not modelled 5.5 11 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Families 57/38 glycoside transferase middle domain Family:4-alpha-glucanotransferase, domain 2 60 c3ifzA_ not modelled 5.5 11 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution 61 d1pv0a_ not modelled 5.5 22 Fold:Long alpha-hairpin Superfamily:Sporulation inhibitor Sda Family:Sporulation inhibitor Sda 62 d2ia9a1 not modelled 5.5 7 Fold:SpoVG-like Superfamily:SpoVG-like Family:SpoVG-like 63 c3d3lB_ not modelled 5.4 16 PDB header:oxidoreductase Chain: B: PDB Molecule:arachidonate 12-lipoxygenase, 12s-type; PDBTitle: the 2.6 a crystal structure of the lipoxygenase domain of2 human arachidonate 12-lipoxygenase, 12s-type (casp target) 64 c1jy2O_ not modelled 5.4 14 PDB header:blood clotting Chain: O: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of the central region of bovine2 fibrinogen (e5 fragment) at 1.4 angstroms resolution 65 c1nohB_ not modelled 5.3 14 PDB header:viral protein Chain: B: PDB Molecule:head morphogenesis protein; PDBTitle: the structure of bacteriophage phi29 scaffolding protein2 gp7 after prohead assembly 66 c2l16A_ not modelled 5.3 15 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 67 c2zxrA_ not modelled 5.3 12 PDB header:hydrolase Chain: A: PDB Molecule:single-stranded dna specific exonuclease recj; PDBTitle: crystal structure of recj in complex with mg2+ from thermus2 thermophilus hb8 68 c2kluA_ not modelled 5.2 10 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 69 d1rype_ not modelled 5.2 15 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 70 d1bjta_ not modelled 5.2 9 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 71 c1bjtA_ not modelled 5.2 9 PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201 72 c2yggA_ not modelled 5.2 25 PDB header:metal binding protein/transport protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: complex of cambr and cam 73 c2q9qC_ not modelled 5.2 7 PDB header:replication Chain: C: PDB Molecule:dna replication complex gins protein psf1; PDBTitle: the crystal structure of full length human gins complex 74 c3sokB_ not modelled 5.1 17 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 75 c3s2xB_ not modelled 5.1 23 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha; PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain 76 d2p0ma1 not modelled 5.1 16 Fold:Lipoxigenase Superfamily:Lipoxigenase Family:Animal lipoxigenases 77 d1tsja_ not modelled 5.1 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0