Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	L	L	M	L	S	L	L	F	F	T	T	A	G	F	S	E	V	S	D	T	L	V	T	G	G	Y	D	K	Q	A	M	S	D	A	I	K	H	A	R	K	E	T	D	K	F	I	E	V	M	N	K	K	D	A	D	T
Secondary structure
SS confidence
Disorder		?	?	?										?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	A	V	K	A	P	I	T	D	H	G	R	T	E	H	F	W	L	T	D	V	T	Y	S	N	G	M	F	I	G	V	I	S	N	D	P	G	I	V	T	N	V	E	Y	G	Q	E	W	K	I	K	K	E	D	I	S	D	W	M	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Sequence		T	R	G	D	K	I	Y	G	G	Y	T	I	D	P	L	L	V	T	Y	P	K	E	E	A	D	E	L	R	A	K	L	V	R
Secondary structure
SS confidence
Disorder																		?														?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kyt chain A Region: 99 - 127 Aligned: 29 Modelled: 29 Confidence: 31.5% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain Phyre2 PDB 2pqh chain A Region: 93 - 128 Aligned: 35 Modelled: 36 Confidence: 26.7% Identity: 20% PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: structure of sh3 chimera with a type ii ligand linked to the chain c-2 terminal Phyre2 PDB 1pwt chain A Region: 93 - 128 Aligned: 35 Modelled: 36 Confidence: 25.4% Identity: 20% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 3cqt chain A Region: 93 - 124 Aligned: 31 Modelled: 32 Confidence: 24.6% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fyn; PDBTitle: n53i v55l mutant of fyn sh3 domain Phyre2 PDB 2l55 chain A Region: 93 - 122 Aligned: 30 Modelled: 30 Confidence: 24.2% Identity: 7% PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans Phyre2 PDB 1gri chain A domain 2 Region: 93 - 128 Aligned: 35 Modelled: 36 Confidence: 23.8% Identity: 11% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 2jtt chain D Region: 28 - 42 Aligned: 15 Modelled: 15 Confidence: 22.2% Identity: 20% PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein Phyre2 PDB 2nwm chain A Region: 93 - 128 Aligned: 35 Modelled: 36 Confidence: 21.5% Identity: 20% PDB header:cell adhesion Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the first sh3 domain of human vinexin2 and its interaction with the peptides from vinculin Phyre2 PDB 3bu2 chain B Region: 65 - 110 Aligned: 41 Modelled: 46 Confidence: 20.6% Identity: 20% PDB header:rna binding protein Chain: B: PDB Molecule:putative trna-binding protein; PDBTitle: crystal structure of a trna-binding protein from2 staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target syr77 Phyre2 PDB 1neg chain A Region: 101 - 128 Aligned: 28 Modelled: 28 Confidence: 20.6% Identity: 14% PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure analysis of n-and c-terminal labeled sh3-2 domain of alpha-chicken spectrin Phyre2 PDB 1neg chain A Region: 101 - 128 Aligned: 28 Modelled: 28 Confidence: 20.6% Identity: 14% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 2ed0 chain A Region: 93 - 128 Aligned: 35 Modelled: 36 Confidence: 20.5% Identity: 11% PDB header:signaling protein Chain: A: PDB Molecule:abl interactor 2; PDBTitle: solution structure of the sh3 domain of abl interactor 22 (abelson interactor 2) Phyre2 PDB 1zat chain A domain 2 Region: 105 - 127 Aligned: 23 Modelled: 23 Confidence: 20.5% Identity: 26% Fold: L,D-transpeptidase pre-catalytic domain-like Superfamily: L,D-transpeptidase pre-catalytic domain-like Family: L,D-transpeptidase pre-catalytic domain-like Phyre2 PDB 1zeq chain X Region: 93 - 113 Aligned: 21 Modelled: 21 Confidence: 20.4% Identity: 5% PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli Phyre2 PDB 1uuf chain A domain 1 Region: 85 - 111 Aligned: 27 Modelled: 27 Confidence: 19.0% Identity: 11% Fold: GroES-like Superfamily: GroES-like Family: Alcohol dehydrogenase-like, N-terminal domain Phyre2 PDB 2yun chain A Region: 101 - 128 Aligned: 28 Modelled: 28 Confidence: 18.4% Identity: 21% PDB header:protein transport Chain: A: PDB Molecule:nostrin; PDBTitle: solution structure of the sh3 domain of human nostrin Phyre2 PDB 2xmf chain A Region: 101 - 128 Aligned: 28 Modelled: 28 Confidence: 18.0% Identity: 29% PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3 Phyre2 PDB 1e6g chain A Region: 101 - 128 Aligned: 28 Modelled: 28 Confidence: 17.9% Identity: 14% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 1e6h chain A Region: 101 - 128 Aligned: 28 Modelled: 28 Confidence: 17.8% Identity: 14% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 2drm chain B Region: 101 - 128 Aligned: 28 Modelled: 28 Confidence: 17.8% Identity: 14% PDB header:contractile protein Chain: B: PDB Molecule:acanthamoeba myosin ib; PDBTitle: acanthamoeba myosin i sh3 domain bound to acan125 Phyre2 1 c2kytA_ 2 c2pqhA_ 3 d1pwta_ 4 c3cqtA_ 5 c2l55A_ 6 d1gria2 7 c2jttD_ 8 c2nwmA_ 9 c3bu2B_ 10 c1negA_ 11 d1nega_ 12 c2ed0A_ 13 d1zata2 14 c1zeqX_ 15 d1uufa1 16 c2yunA_ 17 c2xmfA_ 18 d1e6ga_ 19 d1e6ha_ 20 c2drmB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kytA_ 31.5 14 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 2 c2pqhA_ 26.7 20 PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: structure of sh3 chimera with a type ii ligand linked to the chain c-2 terminal 3 d1pwta_ 25.4 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 4 c3cqtA_ 24.6 16 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fyn; PDBTitle: n53i v55l mutant of fyn sh3 domain 5 c2l55A_ 24.2 7 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 6 d1gria2 23.8 11 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 7 c2jttD_ 22.2 20 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 8 c2nwmA_ 21.5 20 PDB header:cell adhesion Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the first sh3 domain of human vinexin2 and its interaction with the peptides from vinculin 9 c3bu2B_ 20.6 20 PDB header:rna binding protein Chain: B: PDB Molecule:putative trna-binding protein; PDBTitle: crystal structure of a trna-binding protein from2 staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target syr77 10 c1negA_ 20.6 14 PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure analysis of n-and c-terminal labeled sh3-2 domain of alpha-chicken spectrin 11 d1nega_ 20.6 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 12 c2ed0A_ 20.5 11 PDB header:signaling protein Chain: A: PDB Molecule:abl interactor 2; PDBTitle: solution structure of the sh3 domain of abl interactor 22 (abelson interactor 2) 13 d1zata2 20.5 26 Fold:L,D-transpeptidase pre-catalytic domain-like Superfamily:L,D-transpeptidase pre-catalytic domain-like Family:L,D-transpeptidase pre-catalytic domain-like 14 c1zeqX_ 20.4 5 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 15 d1uufa1 19.0 11 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 16 c2yunA_ 18.4 21 PDB header:protein transport Chain: A: PDB Molecule:nostrin; PDBTitle: solution structure of the sh3 domain of human nostrin 17 c2xmfA_ 18.0 29 PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3 18 d1e6ga_ 17.9 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 19 d1e6ha_ 17.8 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 20 c2drmB_ 17.8 14 PDB header:contractile protein Chain: B: PDB Molecule:acanthamoeba myosin ib; PDBTitle: acanthamoeba myosin i sh3 domain bound to acan125 21 d1y7na1 not modelled 16.8 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 22 c2e8gB_ not modelled 16.5 20 PDB header:rna binding protein Chain: B: PDB Molecule:hypothetical protein ph0536; PDBTitle: the structure of protein from p. horikoshii at 1.7 angstrom2 resolution 23 d1oeba_ not modelled 16.5 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 24 c1zx6A_ not modelled 16.4 11 PDB header:protein binding Chain: A: PDB Molecule:ypr154wp; PDBTitle: high-resolution crystal structure of yeast pin3 sh3 domain 25 c2krnA_ not modelled 16.4 11 PDB header:signaling protein Chain: A: PDB Molecule:cd2-associated protein; PDBTitle: high resolution structure of the second sh3 domain of cd2ap 26 c3anuA_ not modelled 16.4 10 PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of d-serine dehydratase from chicken kidney 27 d1wh2a_ not modelled 16.3 20 Fold:GYF/BRK domain-like Superfamily:GYF domain Family:GYF domain 28 c2dl4A_ not modelled 16.1 14 PDB header:signaling protein Chain: A: PDB Molecule:protein stac; PDBTitle: solution structure of the first sh3 domain of stac protein 29 d1gria1 not modelled 15.8 17 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 30 d1eu3a1 not modelled 15.7 50 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 31 d2ux9a1 not modelled 15.7 33 Fold:Dodecin subunit-like Superfamily:Dodecin-like Family:Dodecin-like 32 d1u06a1 not modelled 15.7 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 33 d1i7na1 not modelled 15.7 47 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 34 c3bboL_ not modelled 15.3 18 PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l13; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 35 c2ekhA_ not modelled 15.1 25 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structures of the sh3 domain of human kiaa0418 36 d1ijwc_ not modelled 14.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 37 c3cf5G_ not modelled 14.7 18 PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans 38 d2zjrg1 not modelled 14.7 18 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 39 c2zpmA_ not modelled 14.5 6 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 40 c2vxaL_ not modelled 14.5 27 PDB header:flavoprotein Chain: L: PDB Molecule:dodecin; PDBTitle: h.halophila dodecin in complex with riboflavin 41 d1h8ka_ not modelled 14.3 23 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 42 c2d1xD_ not modelled 14.3 11 PDB header:cell invasion Chain: D: PDB Molecule:cortactin isoform a; PDBTitle: the crystal structure of the cortactin-sh3 domain and amap1-2 peptide complex 43 c3oqtP_ not modelled 14.2 13 PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis 44 d1ng2a1 not modelled 14.0 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 45 d1k4us_ not modelled 13.8 11 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 46 c1uijA_ not modelled 13.7 18 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 47 d2g1la1 not modelled 13.4 11 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 48 d1pk8a1 not modelled 13.3 42 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 49 c3d5bN_ not modelled 13.1 24 PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 50 d1qu5a_ not modelled 12.9 12 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 51 c1ov3A_ not modelled 12.9 15 PDB header:oxidoreductase activator Chain: A: PDB Molecule:neutrophil cytosol factor 1; PDBTitle: structure of the p22phox-p47phox complex 52 d1wixa_ not modelled 12.5 9 Fold:CH domain-like Superfamily:Hook domain Family:Hook domain 53 c2dbmA_ not modelled 12.0 11 PDB header:transferase, signaling protein Chain: A: PDB Molecule:sh3-containing grb2-like protein 2; PDBTitle: solution structures of the sh3 domain of human sh3-2 containing grb2-like protein 2 54 c2eqiA_ not modelled 12.0 14 PDB header:immune system, hydrolase Chain: A: PDB Molecule:phospholipase c, gamma 2; PDBTitle: solution structure of the sh3 domain from phospholipase c,2 gamma 2 55 c1x2pA_ not modelled 12.0 18 PDB header:transferase Chain: A: PDB Molecule:protein arginine n-methyltransferase 2; PDBTitle: solution structure of the sh3 domain of the protein2 arginine n-methyltransferase 2 56 c1xniI_ not modelled 12.0 21 PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 57 d2j01n1 not modelled 11.9 24 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 58 c2ciuA_ not modelled 11.8 17 PDB header:protein transport Chain: A: PDB Molecule:import inner membrane translocase subunit tim21 PDBTitle: structure of the ims domain of the mitochondrial import2 protein tim21 from s. cerevisiae 59 c2y6xA_ not modelled 11.7 20 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kd protein; PDBTitle: structure of psb27 from thermosynechococcus elongatus 60 c1u39A_ not modelled 11.6 14 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 61 c3onrI_ not modelled 11.6 38 PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site 62 d1hcra_ not modelled 11.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 63 c2o2oA_ not modelled 11.4 14 PDB header:protein binding Chain: A: PDB Molecule:sh3-domain kinase-binding protein 1; PDBTitle: solution structure of domain b from human cin85 protein 64 c2jmcA_ not modelled 11.4 17 PDB header:signaling protein Chain: A: PDB Molecule:spectrin alpha chain, brain and p41 peptide PDBTitle: chimer between spc-sh3 and p41 65 c2dilA_ not modelled 11.3 14 PDB header:cell adhesion Chain: A: PDB Molecule:proline-serine-threonine phosphatase-interacting PDBTitle: solution structure of the sh3 domain of the human proline-2 serine-threonine phosphatase-interacting protein 1 66 c2dmoA_ not modelled 11.2 18 PDB header:signaling protein Chain: A: PDB Molecule:neutrophil cytosol factor 2; PDBTitle: refined solution structure of the 1st sh3 domain from human2 neutrophil cytosol factor 2 (ncf-2) 67 c2cucA_ not modelled 11.2 9 PDB header:signaling protein Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: solution structure of the sh3 domain of the mouse2 hypothetical protein sh3rf2 68 d1uuea_ not modelled 10.9 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 69 d1tuca_ not modelled 10.6 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 70 c2bz8B_ not modelled 10.6 11 PDB header:sh3 domain Chain: B: PDB Molecule:sh3-domain kinase binding protein 1; PDBTitle: n-terminal sh3 domain of cin85 bound to cbl-b peptide 71 c1zlmA_ not modelled 10.6 15 PDB header:signaling protein Chain: A: PDB Molecule:osteoclast stimulating factor 1; PDBTitle: crystal structure of the sh3 domain of human osteoclast2 stimulating factor 72 c3i18A_ not modelled 10.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2051 protein; PDBTitle: crystal structure of the pdz domain of the sdrc-like protein2 (lmo2051) from listeria monocytogenes, northeast structural3 genomics consortium target lmr166b 73 d1wlpb2 not modelled 10.6 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 74 c1g7tA_ not modelled 10.5 16 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp 75 d1ujya_ not modelled 10.4 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 76 d1wlpb1 not modelled 10.2 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 77 c2kmfA_ not modelled 10.1 17 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kda protein; PDBTitle: solution structure of psb27 from cyanobacterial photosystem2 ii 78 c3ehkC_ not modelled 10.1 15 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 79 c1ma0B_ not modelled 10.1 15 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione-dependent formaldehyde dehydrogenase; PDBTitle: ternary complex of human glutathione-dependent formaldehyde2 dehydrogenase with nad+ and dodecanoic acid 80 c1wyxA_ not modelled 10.0 14 PDB header:cell adhesion Chain: A: PDB Molecule:crk-associated substrate; PDBTitle: the crystal structure of the p130cas sh3 domain at 1.1 a2 resolution 81 d1sema_ not modelled 10.0 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 82 d1ycsb2 not modelled 9.7 17 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 83 c1q0vA_ not modelled 9.7 13 PDB header:transport binding Chain: A: PDB Molecule:hydrophilic protein; has cysteine rich putative PDBTitle: solution structure of tandem uims of vps27 84 c1f8fA_ not modelled 9.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:benzyl alcohol dehydrogenase; PDBTitle: crystal structure of benzyl alcohol dehydrogenase from acinetobacter2 calcoaceticus 85 d1ov3a2 not modelled 9.5 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 86 c2epdA_ not modelled 9.4 18 PDB header:protein binding Chain: A: PDB Molecule:rho gtpase-activating protein 4; PDBTitle: solution structure of sh3 domain in rho-gtpase-activating2 protein 4 87 c2l0aA_ not modelled 9.4 11 PDB header:signaling protein Chain: A: PDB Molecule:signal transducing adapter molecule 1; PDBTitle: solution nmr structure of signal transducing adapter molecule 1 stam-12 from homo sapiens, northeast structural genomics consortium target3 hr4479e 88 c3a9lB_ not modelled 9.2 10 PDB header:hydrolase Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase; PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase 89 d1yvca1 not modelled 9.2 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 90 d1shfa_ not modelled 9.1 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 91 d1uj0a_ not modelled 9.1 11 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 92 c2djqA_ not modelled 9.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: the solution structure of the first sh3 domain of mouse sh32 domain containing ring finger 2 93 c3fmaD_ not modelled 9.0 25 PDB header:protein binding Chain: D: PDB Molecule:protein smy2; PDBTitle: crystal structure of the gyf domain of smy2 in complex with a proline-2 rich peptide from bbp/scsf1 94 d1ov3a1 not modelled 8.9 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 95 c1z4hA_ not modelled 8.9 5 PDB header:protein binding, dna binding protein Chain: A: PDB Molecule:tor inhibition protein; PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase 96 d2gych1 not modelled 8.9 12 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 97 c2egaA_ not modelled 8.8 14 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the first sh3 domain from human2 kiaa0418 protein 98 d1uhfa_ not modelled 8.7 19 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 99 c3cosD_ not modelled 8.7 23 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 4; PDBTitle: crystal structure of human class ii alcohol dehydrogenase (adh4) in2 complex with nad and zn

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0