Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP45800
DateWed Jan 25 15:20:55 GMT 2012
Unique Job IDc4f2eb709e6db4f5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1jmxa1
Top template information
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
Confidence and coverage
Confidence: 55.4% Coverage: 5%
33 residues ( 5% of your sequence) have been modelled with 55.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRKLTPEERSAVENYLESL
Secondary structure 
SS confidence 
Disorder  ??
?????????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  TQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLP
Secondary structure 
SS confidence 
Disorder 
???????????
????
??
??
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  PFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETRSYALQPVPSTQASIRGEESE
Secondary structure 
SS confidence 
Disorder 
???????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  QIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGA
Secondary structure 
SS confidence 
Disorder  ???
??
??????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  GLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQ
Secondary structure 
SS confidence 
Disorder 
??
??
??
?
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  DLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  DMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPF
Secondary structure 
SS confidence 
Disorder 
?
???
???
?
??????
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  LPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSG
Secondary structure 
SS confidence 
Disorder 
??
????
??????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  MVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLR
Secondary structure 
SS confidence 
Disorder 
?????????
??
???????
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  PVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYD
Secondary structure 
SS confidence 
Disorder 
??
?
?
??????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  YPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTL
Secondary structure 
SS confidence 
Disorder 
?
??
?????
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.
Sequence  LLLTMLGSAIYNGVQAWRRYQRHRTRMMEIQAYYESCLNPQLITPSESLIE
Secondary structure 
SS confidence 
Disorder 
??
????
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1jmx chain A domain 1

3D model

Region: 44 - 81
Aligned: 33
Modelled: 38
Confidence: 55.4%
Identity: 12%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2

Phyre2

PDB 1ebo chain E

3D model

Region: 501 - 578
Aligned: 63
Modelled: 63
Confidence: 51.9%
Identity: 13%
PDB header:viral protein
Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting
PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain

Phyre2

PDB 1pby chain A domain 1

3D model

Region: 44 - 81
Aligned: 33
Modelled: 38
Confidence: 51.6%
Identity: 24%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2

Phyre2

PDB 3ifq chain D

3D model

Region: 557 - 616
Aligned: 60
Modelled: 60
Confidence: 50.0%
Identity: 28%
PDB header:cell adhesion
Chain: D: PDB Molecule:e-cadherin;
PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins

Phyre2

PDB 2q09 chain A domain 1

3D model

Region: 287 - 295
Aligned: 9
Modelled: 9
Confidence: 43.3%
Identity: 89%
Fold: Composite domain of metallo-dependent hydrolases
Superfamily: Composite domain of metallo-dependent hydrolases
Family: Imidazolonepropionase-like

Phyre2

PDB 3k5b chain E

3D model

Region: 502 - 593
Aligned: 79
Modelled: 92
Confidence: 42.0%
Identity: 19%
PDB header:hydrolase
Chain: E: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: crystal structure of the peripheral stalk of thermus thermophilus h+-2 atpase/synthase

Phyre2

PDB 2jo1 chain A

3D model

Region: 230 - 272
Aligned: 36
Modelled: 43
Confidence: 41.8%
Identity: 28%
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles

Phyre2

PDB 2isb chain A domain 1

3D model

Region: 374 - 409
Aligned: 34
Modelled: 35
Confidence: 31.2%
Identity: 18%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: FumA C-terminal domain-like
Family: FumA C-terminal domain-like

Phyre2

PDB 3mk7 chain F

3D model

Region: 3 - 31
Aligned: 29
Modelled: 29
Confidence: 31.0%
Identity: 17%
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase

Phyre2

PDB 1y0n chain A

3D model

Region: 543 - 590
Aligned: 44
Modelled: 48
Confidence: 28.2%
Identity: 30%
Fold: YehU-like
Superfamily: YehU-like
Family: YehU-like

Phyre2

PDB 3c6e chain C

3D model

Region: 392 - 406
Aligned: 15
Modelled: 15
Confidence: 24.2%
Identity: 33%
PDB header:viral protein
Chain: C: PDB Molecule:prm;
PDBTitle: crystal structure of the precursor membrane protein- envelope protein2 heterodimer from the dengue 2 virus at neutral ph

Phyre2

PDB 3c6r chain E

3D model

Region: 392 - 406
Aligned: 15
Modelled: 15
Confidence: 24.1%
Identity: 33%
PDB header:virus
Chain: E: PDB Molecule:peptide pr;
PDBTitle: low ph immature dengue virus

Phyre2

PDB 1ny7 chain 2 domain 2

3D model

Region: 83 - 128
Aligned: 37
Modelled: 46
Confidence: 23.1%
Identity: 16%
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Positive stranded ssRNA viruses
Family: Comoviridae-like VP

Phyre2

PDB 1pgl chain 2 domain 2

3D model

Region: 83 - 128
Aligned: 37
Modelled: 46
Confidence: 23.1%
Identity: 24%
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Positive stranded ssRNA viruses
Family: Comoviridae-like VP

Phyre2

PDB 3rfr chain I

3D model

Region: 180 - 241
Aligned: 62
Modelled: 62
Confidence: 22.7%
Identity: 24%
PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m

Phyre2

PDB 3i24 chain B

3D model

Region: 571 - 647
Aligned: 67
Modelled: 77
Confidence: 21.7%
Identity: 19%
PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176

Phyre2

PDB 1v54 chain K

3D model

Region: 228 - 267
Aligned: 35
Modelled: 39
Confidence: 21.6%
Identity: 17%
Fold: Single transmembrane helix
Superfamily: Mitochondrial cytochrome c oxidase subunit VIIb
Family: Mitochondrial cytochrome c oxidase subunit VIIb

Phyre2

PDB 2y69 chain X

3D model

Region: 228 - 267
Aligned: 35
Modelled: 39
Confidence: 21.6%
Identity: 17%
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 7b;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen

Phyre2

PDB 3noh chain A

3D model

Region: 497 - 549
Aligned: 53
Modelled: 53
Confidence: 20.2%
Identity: 26%
PDB header:peptide binding protein
Chain: A: PDB Molecule:putative peptide binding protein;
PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution

Phyre2

PDB 2bpb chain B

3D model

Region: 44 - 60
Aligned: 17
Modelled: 17
Confidence: 19.4%
Identity: 18%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella

Phyre2
1
d1jmxa1
2
c1eboE_
3
d1pbya1
4
c3ifqD_
5
d2q09a1
6
c3k5bE_
7
c2jo1A_
8
d2isba1
9
c3mk7F_
10
d1y0na_
11
c3c6eC_
12
c3c6rE_
13
d1ny722
14
d1pgl22
15
c3rfrI_
16
c3i24B_
17
d1v54k_
18
c2y69X_
19
c3nohA_
20
c2bpbB_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1jmxa1
55.4 12 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
2c1eboE_
51.9 13 PDB header:viral protein
Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting
PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain
3d1pbya1
51.6 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
4c3ifqD_
50.0 28 PDB header:cell adhesion
Chain: D: PDB Molecule:e-cadherin;
PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins
5d2q09a1
43.3 89 Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Imidazolonepropionase-like
6c3k5bE_
42.0 19 PDB header:hydrolase
Chain: E: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: crystal structure of the peripheral stalk of thermus thermophilus h+-2 atpase/synthase
7c2jo1A_
41.8 28 PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
8d2isba1
31.2 18 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:FumA C-terminal domain-like
Family:FumA C-terminal domain-like
9c3mk7F_
31.0 17 PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
10d1y0na_
28.2 30 Fold:YehU-like
Superfamily:YehU-like
Family:YehU-like
11c3c6eC_
24.2 33 PDB header:viral protein
Chain: C: PDB Molecule:prm;
PDBTitle: crystal structure of the precursor membrane protein- envelope protein2 heterodimer from the dengue 2 virus at neutral ph
12c3c6rE_
24.1 33 PDB header:virus
Chain: E: PDB Molecule:peptide pr;
PDBTitle: low ph immature dengue virus
13d1ny722
23.1 16 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
14d1pgl22
23.1 24 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
15c3rfrI_
22.7 24 PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
16c3i24B_
21.7 19 PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176
17d1v54k_
21.6 17 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIb
Family:Mitochondrial cytochrome c oxidase subunit VIIb
18c2y69X_
21.6 17 PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 7b;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
19c3nohA_
20.2 26 PDB header:peptide binding protein
Chain: A: PDB Molecule:putative peptide binding protein;
PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution
20c2bpbB_
19.4 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella
21d1u61a_
not modelled 18.9 24 Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:RNase III catalytic domain-like
22c3heiF_
not modelled 18.6 25 PDB header:transferase/signaling protein
Chain: F: PDB Molecule:ephrin-a1;
PDBTitle: ligand recognition by a-class eph receptors: crystal structures of the2 epha2 ligand-binding domain and the epha2/ephrin-a1 complex
23d1dgsa2
not modelled 18.5 17 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
24c3ikmD_
not modelled 17.6 26 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme
25c2q04C_
not modelled 17.2 19 PDB header:transferase
Chain: C: PDB Molecule:acetoin utilization protein;
PDBTitle: crystal structure of acetoin utilization protein (zp_00540088.1) from2 exiguobacterium sibiricum 255-15 at 2.33 a resolution
26c2x11B_
not modelled 16.7 25 PDB header:receptor/signaling protein
Chain: B: PDB Molecule:ephrin-a5;
PDBTitle: crystal structure of the complete epha2 ectodomain in2 complex with ephrin a5 receptor binding domain
27d1shxa1
not modelled 16.7 25 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Ephrin ectodomain
28d2o6ka1
not modelled 16.7 19 Fold:SAM domain-like
Superfamily:YozE-like
Family:YozE-like
29c3czuB_
not modelled 16.6 25 PDB header:transferase/signaling protein
Chain: B: PDB Molecule:ephrin-a1;
PDBTitle: crystal structure of the human ephrin a2- ephrin a1 complex
30c2wo3B_
not modelled 16.5 25 PDB header:transferase/signaling protein
Chain: B: PDB Molecule:ephrin-a2;
PDBTitle: crystal structure of the epha4-ephrina2 complex
31d2j5wa3
not modelled 16.3 20 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
32d1ngka_
not modelled 15.9 26 Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
33d1v33a_
not modelled 15.8 19 Fold:Prim-pol domain
Superfamily:Prim-pol domain
Family:PriA-like
34d2cqaa1
not modelled 15.7 28 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
35c3uowB_
not modelled 15.5 19 PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
36d2ctda1
not modelled 14.6 14 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
37d1g71a_
not modelled 14.0 15 Fold:Prim-pol domain
Superfamily:Prim-pol domain
Family:PriA-like
38c3d12E_
not modelled 13.9 29 PDB header:hydrolase/membrane protein
Chain: E: PDB Molecule:ephrin-b3;
PDBTitle: crystal structures of nipah virus g attachment glycoprotein in complex2 with its receptor ephrin-b3
39d1h1oa1
not modelled 13.9 12 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
40c3p87H_
not modelled 13.8 60 PDB header:hydrolase/dna binding protein
Chain: H: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: structure of human pcna bound to rnaseh2b pip box peptide
41c3p87I_
not modelled 13.8 60 PDB header:hydrolase/dna binding protein
Chain: I: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: structure of human pcna bound to rnaseh2b pip box peptide
42c3p87K_
not modelled 13.8 60 PDB header:hydrolase/dna binding protein
Chain: K: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: structure of human pcna bound to rnaseh2b pip box peptide
43c3p87G_
not modelled 13.4 60 PDB header:hydrolase/dna binding protein
Chain: G: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: structure of human pcna bound to rnaseh2b pip box peptide
44c3p87J_
not modelled 13.4 60 PDB header:hydrolase/dna binding protein
Chain: J: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: structure of human pcna bound to rnaseh2b pip box peptide
45c3p87L_
not modelled 13.4 60 PDB header:hydrolase/dna binding protein
Chain: L: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: structure of human pcna bound to rnaseh2b pip box peptide
46d2nwua1
not modelled 13.3 12 Fold:RL5-like
Superfamily:RL5-like
Family:SSO1042-like
47d1zsoa1
not modelled 13.1 25 Fold:MAL13P1.257-like
Superfamily:MAL13P1.257-like
Family:MAL13P1.257-like
48c2p2vA_
not modelled 13.0 19 PDB header:transferase
Chain: A: PDB Molecule:alpha-2,3-sialyltransferase;
PDBTitle: crystal structure analysis of monofunctional alpha-2,3-2 sialyltransferase cst-i from campylobacter jejuni
49c3ktbD_
not modelled 12.1 10 PDB header:transcription regulator
Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor;
PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482
50c3pdsA_
not modelled 12.0 14 PDB header:membrane protein/hydrolase
Chain: A: PDB Molecule:fusion protein beta-2 adrenergic receptor/lysozyme;
PDBTitle: irreversible agonist-beta2 adrenoceptor complex
51c3kgkA_
not modelled 12.0 29 PDB header:chaperone
Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd;
PDBTitle: crystal structure of arsd
52d1ikop_
not modelled 11.9 47 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Ephrin ectodomain
53c1ikoP_
not modelled 11.9 47 PDB header:signaling protein
Chain: P: PDB Molecule:ephrin-b2;
PDBTitle: crystal structure of the murine ephrin-b2 ectodomain
54c2f8mB_
not modelled 11.5 13 PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum
55d1v38a_
not modelled 11.4 30 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
56c2j5dA_
not modelled 11.4 40 PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: nmr structure of bnip3 transmembrane domain in lipid2 bicelles
57d1o0la_
not modelled 11.4 17 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
58c2w2hD_
not modelled 11.3 23 PDB header:rna-binding protein
Chain: D: PDB Molecule:protein tat;
PDBTitle: structural basis of transcription activation by the cyclin2 t1-tat-tar rna complex from eiav
59c2fl8N_
not modelled 11.3 23 PDB header:virus/viral protein
Chain: N: PDB Molecule:baseplate structural protein gp10;
PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation.
60c3lgoA_
not modelled 11.2 19 PDB header:protein binding
Chain: A: PDB Molecule:protein slm4;
PDBTitle: structure of gse1p, member of the gse/ego complex
61c2lmaA_
not modelled 11.0 38 PDB header:immune system
Chain: A: PDB Molecule:thp5 peptide;
PDBTitle: solution structure of cd4+ t cell derived peptide thp5
62c2jwaA_
not modelled 10.9 18 PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
63d1fcdc1
not modelled 10.7 5 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
64d2fj6a1
not modelled 10.5 25 Fold:SAM domain-like
Superfamily:YozE-like
Family:YozE-like
65d1lira_
not modelled 10.5 30 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
66c3cp5A_
not modelled 10.4 20 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus
67d2evra2
not modelled 10.4 60 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:NlpC/P60
68c3oa8A_
not modelled 10.3 19 PDB header:heme-binding protein/heme-binding protei
Chain: A: PDB Molecule:soxa;
PDBTitle: diheme soxax
69c2l4dA_
not modelled 10.3 38 PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
70d1mida_
not modelled 10.0 42 Fold:Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
Superfamily:Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
Family:Plant lipid-transfer and hydrophobic proteins
71c3ixxE_
not modelled 10.0 33 PDB header:virus
Chain: E: PDB Molecule:peptide pr;
PDBTitle: the pseudo-atomic structure of west nile immature virus in2 complex with fab fragments of the anti-fusion loop antibody3 e53
72d2bmta_
not modelled 9.8 45 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
73c1pbyA_
not modelled 9.8 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda
PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
74c1sddA_
not modelled 9.6 11 PDB header:blood clotting
Chain: A: PDB Molecule:coagulation factor v;
PDBTitle: crystal structure of bovine factor vai
75c2vofA_
not modelled 9.6 20 PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
76c2ehwD_
not modelled 9.3 20 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein tthb059;
PDBTitle: conserved hypothetical proteim (tthb059) from thermo thermophilus hb8
77d1g3wa3
not modelled 9.3 32 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
78d1m70a2
not modelled 9.0 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
79d1y88a1
not modelled 8.9 43 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:Hypothetical protein AF1548, C-terminal domain
80d1kpfa_
not modelled 8.9 17 Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
81d1wejf_
not modelled 8.7 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
82c3rqrA_
not modelled 8.7 24 PDB header:metal transport
Chain: A: PDB Molecule:ryanodine receptor 1;
PDBTitle: crystal structure of the ryr domain of the rabbit ryanodine receptor
83c2ka2A_
not modelled 8.5 40 PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
84c2ka1B_
not modelled 8.5 40 PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
85d1hlca_
not modelled 8.4 28 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
86c2zkqg_
not modelled 8.3 19 PDB header:ribosomal protein/rna
Chain: G: PDB Molecule:rna helix;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
87c1bmv2_
not modelled 8.1 24 PDB header:virus/rna
Chain: 2: PDB Molecule:protein (icosahedral virus - b and c domain);
PDBTitle: protein-rna interactions in an icosahedral virus at 3.02 angstroms resolution
88c2fg0B_
not modelled 8.1 60 PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution
89c2axkA_
not modelled 8.1 36 PDB header:toxin
Chain: A: PDB Molecule:discrepin;
PDBTitle: solution structure of discrepin, a scorpion venom toxin2 blocking k+ channels.
90c3arcl_
not modelled 8.0 35 PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
91c2ka2B_
not modelled 8.0 42 PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
92c2ka1A_
not modelled 8.0 42 PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
93c2p57A_
not modelled 8.0 32 PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
94c2xivA_
not modelled 8.0 80 PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis
95c3o47A_
not modelled 7.9 18 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
96c2k8iA_
not modelled 7.9 38 PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: solution structure of e.coli slyd
97c1oheA_
not modelled 7.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
98c3gt2A_
not modelled 7.9 60 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c
99d1xrda1
not modelled 7.8 23 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0