Secondary structure and disorder prediction

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Sequence		M	K	Q	S	E	F	R	R	W	L	E	S	Q	G	V	D	V	A	N	G	S	N	H	L	K	L	R	F	H	G	R	R	S	V	M	P	R	H	P	C	D	E	I	K	E	P	L	R	K	A	I	L	K	Q	L	G	L	S
Secondary structure
SS confidence
Disorder		?	?																?																									?												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1whz chain A Region: 1 - 58 Aligned: 57 Modelled: 58 Confidence: 99.7% Identity: 28% Fold: dsRBD-like Superfamily: YcfA/nrd intein domain Family: YcfA-like Phyre2 PDB 2wj0 chain B Region: 4 - 23 Aligned: 20 Modelled: 20 Confidence: 58.0% Identity: 10% PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate Phyre2 PDB 1gef chain A Region: 4 - 23 Aligned: 20 Modelled: 20 Confidence: 54.0% Identity: 25% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 1ob8 chain A Region: 4 - 23 Aligned: 20 Modelled: 20 Confidence: 49.8% Identity: 25% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 1hh1 chain A Region: 4 - 22 Aligned: 19 Modelled: 19 Confidence: 49.1% Identity: 16% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 3o2q chain B Region: 1 - 37 Aligned: 37 Modelled: 37 Confidence: 37.1% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex Phyre2 PDB 3o2s chain B Region: 1 - 37 Aligned: 37 Modelled: 37 Confidence: 37.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex Phyre2 PDB 2jug chain B Region: 4 - 29 Aligned: 26 Modelled: 26 Confidence: 27.5% Identity: 15% PDB header:biosynthetic protein Chain: B: PDB Molecule:tubc protein; PDBTitle: multienzyme docking in hybrid megasynthetases Phyre2 PDB 1h3d chain A domain 1 Region: 3 - 48 Aligned: 45 Modelled: 46 Confidence: 24.5% Identity: 13% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 3cf4 chain A Region: 1 - 17 Aligned: 17 Modelled: 17 Confidence: 17.8% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex Phyre2 PDB 1ul7 chain A Region: 3 - 22 Aligned: 20 Modelled: 20 Confidence: 17.6% Identity: 20% Fold: TBP-like Superfamily: KA1-like Family: Kinase associated domain 1, KA1 Phyre2 PDB 1nh8 chain A domain 1 Region: 3 - 49 Aligned: 45 Modelled: 47 Confidence: 16.1% Identity: 16% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2lci chain A Region: 5 - 18 Aligned: 14 Modelled: 14 Confidence: 15.9% Identity: 57% PDB header:de novo protein Chain: A: PDB Molecule:protein or36; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or36 (casd3 target) Phyre2 PDB 1q1k chain A Region: 3 - 49 Aligned: 47 Modelled: 47 Confidence: 15.1% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: structure of atp-phosphoribosyltransferase from e. coli complexed with2 pr-atp Phyre2 PDB 2vd3 chain B Region: 3 - 49 Aligned: 47 Modelled: 47 Confidence: 14.4% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum Phyre2 PDB 1nh7 chain A Region: 3 - 48 Aligned: 46 Modelled: 46 Confidence: 13.9% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: atp phosphoribosyltransferase (atp-prtase) from mycobacterium2 tuberculosis Phyre2 PDB 3fdf chain A Region: 5 - 37 Aligned: 33 Modelled: 33 Confidence: 13.2% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. Phyre2 PDB 2doa chain A domain 1 Region: 1 - 15 Aligned: 15 Modelled: 15 Confidence: 13.0% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: ELL N2 domain-like Phyre2 PDB 1k25 chain A domain 2 Region: 1 - 22 Aligned: 22 Modelled: 22 Confidence: 12.4% Identity: 5% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 1o6w chain A domain 2 Region: 4 - 33 Aligned: 30 Modelled: 30 Confidence: 11.7% Identity: 13% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 1 d1whza_ 2 c2wj0B_ 3 d1gefa_ 4 d1ob8a_ 5 d1hh1a_ 6 c3o2qB_ 7 c3o2sB_ 8 c2jugB_ 9 d1h3da1 10 c3cf4A_ 11 d1ul7a_ 12 d1nh8a1 13 c2lciA_ 14 c1q1kA_ 15 c2vd3B_ 16 c1nh7A_ 17 c3fdfA_ 18 d2doaa1 19 d1k25a2 20 d1o6wa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1whza_ 99.7 28 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 2 c2wj0B_ 58.0 10 PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate 3 d1gefa_ 54.0 25 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 4 d1ob8a_ 49.8 25 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 5 d1hh1a_ 49.1 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 6 c3o2qB_ 37.1 19 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 7 c3o2sB_ 37.0 19 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex 8 c2jugB_ 27.5 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:tubc protein; PDBTitle: multienzyme docking in hybrid megasynthetases 9 d1h3da1 24.5 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 10 c3cf4A_ 17.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 11 d1ul7a_ 17.6 20 Fold:TBP-like Superfamily:KA1-like Family:Kinase associated domain 1, KA1 12 d1nh8a1 16.1 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 13 c2lciA_ 15.9 57 PDB header:de novo protein Chain: A: PDB Molecule:protein or36; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or36 (casd3 target) 14 c1q1kA_ 15.1 15 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: structure of atp-phosphoribosyltransferase from e. coli complexed with2 pr-atp 15 c2vd3B_ 14.4 17 PDB header:transferase Chain: B: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum 16 c1nh7A_ 13.9 11 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: atp phosphoribosyltransferase (atp-prtase) from mycobacterium2 tuberculosis 17 c3fdfA_ 13.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. 18 d2doaa1 13.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ELL N2 domain-like 19 d1k25a2 12.4 5 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 20 d1o6wa2 11.7 13 Fold:WW domain-like Superfamily:WW domain Family:WW domain 21 c2dcrA_ not modelled 11.1 15 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fes/fps; PDBTitle: fully automated solution structure determination of the fes2 sh2 domain 22 c2v1nA_ not modelled 10.8 31 PDB header:nuclear protein Chain: A: PDB Molecule:protein kin homolog; PDBTitle: solution structure of the region 51-160 of human kin172 reveals a winged helix fold 23 c3jthA_ not modelled 10.7 21 PDB header:transcription Chain: A: PDB Molecule:transcription activator hlyu; PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6 24 c2e5nA_ not modelled 10.6 33 PDB header:transcription Chain: A: PDB Molecule:rna polymerase ii elongation factor ell2; PDBTitle: solution structure of the ell_n2 domain of target of rna2 polymerase ii elongation factor ell2 25 c2gjwC_ not modelled 10.4 19 PDB header:hydrolase/rna Chain: C: PDB Molecule:trna-splicing endonuclease; PDBTitle: rna recognition and cleavage by an splicing endonuclease 26 c3ieyA_ not modelled 10.1 9 PDB header:hydrolase/rna binding protein Chain: A: PDB Molecule:trna-splicing endonuclease; PDBTitle: crystal structure of the functional nanoarchaeum equitans trna2 splicing endonuclease 27 d1pyya2 not modelled 9.4 0 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 28 c2zkrt_ not modelled 9.2 23 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 29 d2fi0a1 not modelled 9.1 29 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 30 c3g3zA_ not modelled 9.0 19 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 31 c2it0A_ not modelled 8.7 32 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 32 d2p5ka1 not modelled 8.5 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 33 c2vd2A_ not modelled 8.3 11 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the crystal structure of hisg from b. subtilis 34 d1f1ea_ not modelled 7.5 29 Fold:Histone-fold Superfamily:Histone-fold Family:Archaeal histone 35 d1rp5a2 not modelled 7.4 0 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 36 d1b4aa1 not modelled 7.4 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 37 c3a1yF_ not modelled 7.4 37 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex 38 d1r1ta_ not modelled 7.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 39 c3hruA_ not modelled 7.4 14 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 40 c2jscB_ not modelled 7.1 17 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050; PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis 41 c3eyiB_ not modelled 7.0 30 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 42 c1zrjA_ not modelled 6.9 36 PDB header:dna binding protein Chain: A: PDB Molecule:e1b-55kda-associated protein 5 isoform c; PDBTitle: solution structure of the sap domain of human e1b-55kda-2 associated protein 5 isoform c 43 d1gyza_ not modelled 6.8 22 Fold:PABP domain-like Superfamily:Ribosomal protein L20 Family:Ribosomal protein L20 44 c1g3wA_ not modelled 6.8 25 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 45 c2bruC_ not modelled 6.6 27 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 46 c1pt9B_ not modelled 6.6 27 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 47 d1d4oa_ not modelled 6.6 27 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 48 d1h1js_ not modelled 6.6 7 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 49 c1b4aA_ not modelled 6.6 28 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus 50 c2do1A_ not modelled 6.5 21 PDB header:gene regulation Chain: A: PDB Molecule:nuclear protein hcc-1; PDBTitle: solution structure of the sap domain of human nuclear2 protein hcc-1 51 d2a2pa1 not modelled 6.5 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 52 c3ereD_ not modelled 6.5 28 PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator 53 d1i94m_ not modelled 6.4 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 54 d1pnoa_ not modelled 6.4 33 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 55 c1keeH_ not modelled 6.4 25 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 56 c3ieyB_ not modelled 6.4 18 PDB header:hydrolase/rna binding protein Chain: B: PDB Molecule:neq261; PDBTitle: crystal structure of the functional nanoarchaeum equitans trna2 splicing endonuclease 57 d1xrsb2 not modelled 6.3 21 Fold:Dodecin subunit-like Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 58 d1ub9a_ not modelled 6.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 59 d1g5qa_ not modelled 6.3 12 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 60 c3pqkD_ not modelled 6.3 17 PDB header:transcription Chain: D: PDB Molecule:biofilm growth-associated repressor; PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa 61 d1zrja1 not modelled 6.3 36 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 62 c1f5tA_ not modelled 6.2 25 PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence 63 c2k4bA_ not modelled 6.1 4 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: copr repressor structure 64 c1fx7C_ not modelled 6.1 32 PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis 65 d1jqlb_ not modelled 6.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 66 c2zkqm_ not modelled 5.9 6 PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 67 c2vb0A_ not modelled 5.8 28 PDB header:hydrolase Chain: A: PDB Molecule:polyprotein 3bcd; PDBTitle: crystal structure of coxsackievirus b3 proteinase 3c 68 c2qwwB_ not modelled 5.7 19 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 69 d2fxaa1 not modelled 5.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 70 d1p3y1_ not modelled 5.3 12 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 71 d2d1ha1 not modelled 5.2 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 72 c2kk6A_ not modelled 5.2 23 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fer; PDBTitle: solution structure of sh2 domain of proto-oncogene tyrosine-2 protein kinase fer from homo sapiens, northeast structural3 genomics consortium (nesg) target hr3461d 73 d1p4xa1 not modelled 5.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 74 d2frha1 not modelled 5.1 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 75 c2kvuA_ not modelled 5.1 29 PDB header:transcription regulator Chain: A: PDB Molecule:mkl/myocardin-like protein 1; PDBTitle: solution nmr structure of sap domain of mkl/myocardin-like2 protein 1 from h.sapiens, northeast structural genomics3 consortium target target hr4547e 76 d1f9na1 not modelled 5.1 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 77 d2al3a1 not modelled 5.1 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 78 d1g3wa1 not modelled 5.0 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0